Wall clock time and date at job start Fri Apr 10 2020 18:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34706 * 116.99916 * 2 1 4 4 O 1.21453 * 119.99999 * 0.02562 * 3 2 1 5 5 C 1.47851 * 120.00005 * 180.02562 * 3 2 1 6 6 C 1.39238 * 120.19926 * 305.28622 * 5 3 2 7 7 C 1.38234 * 119.99226 * 180.02562 * 6 5 3 8 8 C 1.38370 * 120.40912 * 0.02562 * 7 6 5 9 9 C 1.38227 * 120.40891 * 0.02562 * 8 7 6 10 10 C 1.39244 * 119.99719 * 359.97438 * 9 8 7 11 11 C 1.47841 * 120.20410 * 180.02562 * 10 9 8 12 12 O 1.21453 * 120.00225 * 173.77936 * 11 10 9 13 13 O 1.34707 * 119.99873 * 353.78233 * 11 10 9 14 14 C 1.45202 * 116.99899 * 179.97438 * 13 11 10 15 15 C 1.50696 * 109.46912 * 179.97438 * 14 13 11 16 16 O 1.21278 * 120.00350 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99679 * 180.02562 * 15 14 13 18 18 C 1.46505 * 120.00209 * 179.97438 * 17 15 14 19 19 C 1.50698 * 109.47488 * 180.02562 * 18 17 15 20 20 H 1.08001 * 120.00004 * 359.97438 * 19 18 17 21 21 C 1.37875 * 120.00034 * 180.02562 * 19 18 17 22 22 N 1.31517 * 119.99893 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 119.99967 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47049 * 90.00275 * 23 21 19 25 25 H 1.48497 * 109.46914 * 210.00142 * 23 21 19 26 26 H 1.48498 * 109.47245 * 330.00514 * 23 21 19 27 27 H 1.08990 * 109.47067 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46854 * 299.99502 * 1 2 3 29 29 H 1.08995 * 109.46930 * 59.99347 * 1 2 3 30 30 H 1.07997 * 120.00587 * 0.02562 * 6 5 3 31 31 H 1.07998 * 119.79582 * 179.72249 * 7 6 5 32 32 H 1.07993 * 119.79236 * 179.97438 * 8 7 6 33 33 H 1.08002 * 120.00206 * 180.02562 * 9 8 7 34 34 H 1.09003 * 109.46859 * 300.00069 * 14 13 11 35 35 H 1.09000 * 109.46994 * 59.99999 * 14 13 11 36 36 H 0.97005 * 120.00341 * 0.02562 * 17 15 14 37 37 H 1.08997 * 109.47008 * 300.00639 * 18 17 15 38 38 H 1.09000 * 109.46798 * 60.00181 * 18 17 15 39 39 H 0.97002 * 119.99606 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4021 2.2188 0.0005 5 6 3.5401 1.2777 -0.0006 6 6 4.2763 0.6199 0.9813 7 6 5.6565 0.6956 0.9770 8 6 6.3150 1.4230 0.0014 9 6 5.6008 2.0833 -0.9807 10 6 4.2099 2.0185 -0.9925 11 6 3.4414 2.7226 -2.0411 12 8 2.2385 2.5728 -2.1163 13 8 4.0754 3.5302 -2.9131 14 6 3.2577 4.1885 -3.9162 15 6 4.1329 5.0445 -4.7950 16 8 5.3282 5.0944 -4.5958 17 7 3.5873 5.7546 -5.8022 18 6 4.4380 6.5873 -6.6562 19 6 3.5892 7.2714 -7.6966 20 1 2.5227 7.1026 -7.7197 21 6 4.1742 8.1121 -8.6196 22 7 3.4334 8.7088 -9.5279 23 14 6.0189 8.4036 -8.5802 24 1 6.6974 7.3976 -9.4362 25 1 6.3156 9.7669 -9.0885 26 1 6.5102 8.2779 -7.1844 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 3.7690 0.0507 1.7462 31 1 6.2242 0.1879 1.7427 32 1 7.3937 1.4757 0.0077 33 1 6.1215 2.6488 -1.7393 34 1 2.7547 3.4373 -4.5252 35 1 2.5137 4.8151 -3.4244 36 1 2.6312 5.7150 -5.9613 37 1 4.9406 7.3382 -6.0467 38 1 5.1823 5.9612 -7.1484 39 1 3.8450 9.3006 -10.1770 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728153894.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:09 Heat of formation + Delta-G solvation = -191.442405 kcal Electronic energy + Delta-G solvation = -25836.026870 eV Core-core repulsion = 21708.683344 eV Total energy + Delta-G solvation = -4127.343526 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.114 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.23790 -41.32855 -40.47485 -39.60787 -37.79024 -37.32070 -36.23307 -34.48607 -32.83988 -32.70967 -31.09011 -28.98573 -28.69020 -25.87964 -24.68598 -24.11419 -22.75646 -21.77790 -21.68388 -19.70208 -19.19416 -18.89840 -18.36723 -18.01614 -17.91302 -17.50889 -17.34689 -16.94456 -16.32802 -16.22402 -15.90199 -15.81266 -15.36743 -14.84295 -14.78605 -14.58144 -14.39309 -14.27732 -13.95813 -13.91363 -13.54136 -13.22010 -13.10025 -12.94947 -12.71443 -12.56357 -12.04602 -11.95942 -11.93881 -11.75804 -11.68907 -11.54132 -11.02669 -10.93509 -10.25724 -10.20523 -10.07790 -8.41081 -6.49178 -0.70637 -0.01433 1.01860 1.14261 1.30505 1.33551 1.36100 1.45204 1.48596 1.64942 2.27514 2.37798 2.58431 2.94174 3.39236 3.54272 3.60921 3.72364 3.94414 3.95780 3.96935 4.21367 4.23344 4.27343 4.30147 4.46749 4.66672 4.71962 4.80787 4.97607 4.98698 5.02915 5.15520 5.21601 5.26186 5.31257 5.35854 5.68090 6.03474 6.37482 6.50164 6.61039 6.67245 7.07773 7.22941 8.73588 Molecular weight = 321.11amu Principal moments of inertia in cm(-1) A = 0.021165 B = 0.002481 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.607437 B =11283.925080 C =12481.028810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.355 6.355 3 C 0.506 3.494 4 O -0.509 6.509 5 C -0.077 4.077 6 C -0.079 4.079 7 C -0.069 4.069 8 C -0.096 4.096 9 C -0.067 4.067 10 C -0.108 4.108 11 C 0.496 3.504 12 O -0.512 6.512 13 O -0.334 6.334 14 C 0.058 3.942 15 C 0.509 3.491 16 O -0.572 6.572 17 N -0.697 5.697 18 C 0.233 3.767 19 C -0.550 4.550 20 H 0.059 0.941 21 C 0.026 3.974 22 N -0.931 5.931 23 Si 0.939 3.061 24 H -0.263 1.263 25 H -0.274 1.274 26 H -0.258 1.258 27 H 0.139 0.861 28 H 0.067 0.933 29 H 0.050 0.950 30 H 0.168 0.832 31 H 0.186 0.814 32 H 0.175 0.825 33 H 0.146 0.854 34 H 0.123 0.877 35 H 0.117 0.883 36 H 0.412 0.588 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.757 -22.392 25.376 33.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.271 6.271 3 C 0.349 3.651 4 O -0.397 6.397 5 C -0.078 4.078 6 C -0.097 4.097 7 C -0.086 4.086 8 C -0.113 4.113 9 C -0.085 4.085 10 C -0.109 4.109 11 C 0.341 3.659 12 O -0.401 6.401 13 O -0.250 6.250 14 C -0.018 4.018 15 C 0.294 3.706 16 O -0.452 6.452 17 N -0.348 5.348 18 C 0.110 3.890 19 C -0.588 4.588 20 H 0.078 0.922 21 C -0.175 4.175 22 N -0.570 5.570 23 Si 0.763 3.237 24 H -0.188 1.188 25 H -0.199 1.199 26 H -0.182 1.182 27 H 0.157 0.843 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.186 0.814 31 H 0.203 0.797 32 H 0.192 0.808 33 H 0.164 0.836 34 H 0.141 0.859 35 H 0.135 0.865 36 H 0.248 0.752 37 H 0.036 0.964 38 H 0.037 0.963 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.982 -21.940 25.282 33.608 hybrid contribution -0.673 0.889 -0.964 1.474 sum 2.310 -21.051 24.318 32.247 Atomic orbital electron populations 1.23560 0.74448 1.05865 1.02353 1.86562 1.25122 1.31468 1.83990 1.21384 0.89509 0.81934 0.72253 1.90860 1.67078 1.37153 1.44599 1.19143 0.89112 1.01044 0.98530 1.21630 0.95123 0.96183 0.96770 1.21969 0.93095 0.95483 0.98092 1.21895 1.02710 0.94306 0.92422 1.21722 0.90779 0.96791 0.99212 1.18979 0.94798 1.01939 0.95189 1.21723 0.86228 0.77053 0.80870 1.90906 1.15871 1.62031 1.71330 1.86546 1.41192 1.56352 1.40866 1.22749 0.92193 0.97321 0.89576 1.20379 0.88417 0.80505 0.81267 1.90666 1.16939 1.65984 1.71654 1.45867 1.12740 1.45598 1.30596 1.19194 0.91042 0.89694 0.89103 1.21267 0.95549 1.28030 1.13914 0.92238 1.25625 1.03104 0.94536 0.94219 1.69986 1.38046 1.30663 1.18269 0.85830 0.79816 0.78393 0.79711 1.18822 1.19900 1.18167 0.84340 0.91405 0.93132 0.81431 0.79704 0.80768 0.83576 0.85947 0.86477 0.75161 0.96356 0.96322 0.91787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.56 113.37 1.20 1.69 16 2 O -0.35 -7.63 10.58 -56.16 -0.59 -8.22 16 3 C 0.51 13.37 6.05 70.37 0.43 13.79 16 4 O -0.51 -17.18 14.49 27.64 0.40 -16.78 16 5 C -0.08 -1.66 5.79 -19.87 -0.11 -1.77 16 6 C -0.08 -0.92 9.78 22.51 0.22 -0.70 16 7 C -0.07 -0.44 10.03 22.30 0.22 -0.22 16 8 C -0.10 -0.89 10.03 22.30 0.22 -0.66 16 9 C -0.07 -1.19 9.61 22.51 0.22 -0.98 16 10 C -0.11 -2.61 5.90 -19.88 -0.12 -2.73 16 11 C 0.50 15.32 7.79 70.36 0.55 15.87 16 12 O -0.51 -18.03 12.77 27.64 0.35 -17.68 16 13 O -0.33 -10.68 9.03 -49.78 -0.45 -11.13 16 14 C 0.06 1.77 5.95 71.23 0.42 2.19 16 15 C 0.51 19.40 7.91 87.66 0.69 20.09 16 16 O -0.57 -26.07 16.50 15.78 0.26 -25.81 16 17 N -0.70 -27.76 5.55 -466.79 -2.59 -30.35 16 18 C 0.23 11.28 4.50 85.63 0.38 11.67 16 19 C -0.55 -30.19 9.83 25.60 0.25 -29.94 16 20 H 0.06 3.44 7.84 -2.91 -0.02 3.42 16 21 C 0.03 1.44 5.47 84.65 0.46 1.90 16 22 N -0.93 -55.57 13.96 21.45 0.30 -55.27 16 23 Si 0.94 43.56 27.47 68.60 1.88 45.45 16 24 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 25 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 26 H -0.26 -11.75 6.54 99.48 0.65 -11.10 16 27 H 0.14 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 29 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.17 1.03 8.06 -2.91 -0.02 1.01 16 31 H 0.19 -0.39 8.06 -2.91 -0.02 -0.41 16 32 H 0.17 0.47 8.06 -2.91 -0.02 0.45 16 33 H 0.15 2.77 7.62 -2.91 -0.02 2.75 16 34 H 0.12 3.17 8.14 -2.39 -0.02 3.15 16 35 H 0.12 3.19 8.14 -2.39 -0.02 3.18 16 36 H 0.41 14.27 8.32 -92.70 -0.77 13.50 16 37 H 0.02 0.94 7.20 -2.39 -0.02 0.92 16 38 H 0.02 0.93 7.57 -2.39 -0.02 0.92 16 39 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -81.88 352.00 4.88 -77.00 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: 0.27 Total: 12.60 kcal Atomic # 6 Polarization: 25.16 SS G_CDS: 5.04 Total: 30.20 kcal Atomic # 7 Polarization: -83.33 SS G_CDS: -2.29 Total: -85.62 kcal Atomic # 8 Polarization: -79.59 SS G_CDS: -0.03 Total: -79.62 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 1.88 Total: 45.45 kcal Total: -81.88 4.88 -77.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728153894.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.440 kcal (2) G-P(sol) polarization free energy of solvation -81.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds