Wall clock time and date at job start Fri Apr 10 2020 18:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42908 * 113.99712 * 2 1 4 4 C 1.52999 * 109.46884 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.46823 * 185.17473 * 4 3 2 6 6 H 1.09004 * 109.67889 * 63.31309 * 5 4 3 7 7 C 1.53295 * 109.68135 * 302.80036 * 5 4 3 8 8 O 1.42957 * 109.22005 * 187.97606 * 7 5 4 9 9 C 1.42965 * 114.17111 * 62.57767 * 8 7 5 10 10 C 1.53295 * 109.21957 * 297.42126 * 9 8 7 11 11 N 1.47147 * 109.68247 * 183.83163 * 5 4 3 12 12 S 1.65608 * 120.97991 * 350.23697 * 11 5 4 13 13 O 1.42100 * 104.27225 * 196.27359 * 12 11 5 14 14 O 1.42107 * 104.27546 * 324.12559 * 12 11 5 15 15 C 1.81396 * 104.45037 * 80.19933 * 12 11 5 16 16 C 1.52995 * 109.46837 * 179.97438 * 15 12 11 17 17 C 1.53004 * 109.46981 * 179.97438 * 16 15 12 18 18 C 1.50700 * 109.47160 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00096 * 0.02562 * 18 17 16 20 20 C 1.37882 * 119.99945 * 180.02562 * 18 17 16 21 21 N 1.31507 * 119.99867 * 180.02562 * 20 18 17 22 22 Si 1.86794 * 120.00096 * 359.97438 * 20 18 17 23 23 H 1.48506 * 109.46995 * 89.99940 * 22 20 18 24 24 H 1.48496 * 109.47298 * 210.00243 * 22 20 18 25 25 H 1.48508 * 109.47233 * 330.00497 * 22 20 18 26 26 H 1.08999 * 109.46923 * 299.99745 * 1 2 3 27 27 H 1.09000 * 109.46462 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47105 * 60.00216 * 1 2 3 29 29 H 1.09006 * 109.46828 * 300.00333 * 3 2 1 30 30 H 1.09003 * 109.46494 * 59.99902 * 3 2 1 31 31 H 1.08999 * 109.46807 * 305.16871 * 4 3 2 32 32 H 1.08991 * 109.47412 * 65.17485 * 4 3 2 33 33 H 1.09000 * 109.50825 * 307.89925 * 7 5 4 34 34 H 1.08996 * 109.51426 * 68.05210 * 7 5 4 35 35 H 1.09009 * 109.50943 * 57.33975 * 9 8 7 36 36 H 1.08996 * 109.51480 * 177.49170 * 9 8 7 37 37 H 1.08998 * 109.67892 * 172.02503 * 10 9 8 38 38 H 1.09003 * 109.68100 * 292.53344 * 10 9 8 39 39 H 1.09003 * 109.46883 * 300.00047 * 15 12 11 40 40 H 1.09001 * 109.46969 * 59.99850 * 15 12 11 41 41 H 1.09003 * 109.47515 * 299.99774 * 16 15 12 42 42 H 1.09001 * 109.47371 * 60.00209 * 16 15 12 43 43 H 1.09003 * 109.46926 * 300.00275 * 17 16 15 44 44 H 1.09001 * 109.46783 * 59.99990 * 17 16 15 45 45 H 0.97003 * 120.00099 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 4.1573 2.5767 0.1295 6 1 3.8791 3.0148 1.0880 7 6 3.6608 3.4726 -1.0111 8 8 4.3848 4.7051 -0.9906 9 6 5.7901 4.5623 -1.2111 10 6 6.3955 3.7221 -0.0808 11 7 5.6224 2.4756 0.0372 12 16 6.3786 1.0025 0.0648 13 8 7.7370 1.3113 0.3453 14 8 5.6021 0.2268 0.9675 15 6 6.2051 0.3729 -1.6275 16 6 6.8727 -0.9998 -1.7318 17 6 6.7259 -1.5312 -3.1591 18 6 7.3839 -2.8830 -3.2620 19 1 7.8590 -3.3197 -2.3960 20 6 7.3795 -3.5623 -4.4619 21 7 7.9534 -4.7422 -4.5515 22 14 6.5573 -2.8074 -5.9596 23 1 7.5467 -1.9922 -6.7092 24 1 6.0394 -3.8876 -6.8371 25 1 5.4321 -1.9420 -5.5231 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 1.6885 1.8465 -0.8900 30 1 1.6885 1.8464 0.8900 31 1 3.8512 0.5659 0.8392 32 1 3.8632 0.7262 -0.9335 33 1 3.8230 2.9708 -1.9650 34 1 2.5974 3.6728 -0.8803 35 1 5.9601 4.0644 -2.1659 36 1 6.2585 5.5464 -1.2243 37 1 7.4347 3.4891 -0.3127 38 1 6.3440 4.2762 0.8565 39 1 5.1474 0.2827 -1.8750 40 1 6.6834 1.0629 -2.3227 41 1 7.9304 -0.9093 -1.4845 42 1 6.3948 -1.6900 -1.0366 43 1 5.6680 -1.6218 -3.4060 44 1 7.2035 -0.8411 -3.8546 45 1 7.9500 -5.2203 -5.3955 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000367911429.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:20 Heat of formation + Delta-G solvation = -154.469929 kcal Electronic energy + Delta-G solvation = -26836.028515 eV Core-core repulsion = 22981.565281 eV Total energy + Delta-G solvation = -3854.463234 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -39.92321 -38.13482 -37.26212 -35.99969 -35.46292 -34.87661 -33.43283 -32.23132 -29.70583 -28.45228 -27.27918 -26.37153 -24.77200 -23.72085 -22.30590 -21.52124 -20.27827 -19.04819 -17.71495 -17.17021 -16.91681 -16.74895 -16.28560 -16.03919 -15.91666 -15.59696 -15.33705 -15.04830 -14.77829 -14.72844 -14.29735 -14.20196 -13.39860 -12.97412 -12.82137 -12.68845 -12.41774 -12.22392 -12.09097 -12.04163 -11.98408 -11.86100 -11.72600 -11.64011 -11.36652 -11.10460 -11.01184 -10.85881 -10.72335 -10.31209 -10.10456 -9.89264 -9.82071 -9.63741 -9.28849 -9.02117 -8.59622 -6.09210 -4.08462 0.25316 2.45161 3.25409 3.33207 3.35188 3.36629 3.55507 3.79801 4.09845 4.34271 4.35527 4.39459 4.54363 4.70648 4.77984 4.86976 4.87391 4.94490 4.96760 5.02775 5.11776 5.14153 5.17005 5.22991 5.23976 5.24518 5.34664 5.48378 5.55676 5.62983 5.74308 5.85455 6.08183 6.18101 6.24269 6.28019 6.64288 6.74892 6.96391 7.10454 7.24812 7.69900 8.46703 8.95213 9.51887 11.04130 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.010822 B = 0.004284 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2586.630100 B = 6533.886432 C = 7580.508641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.072 3.928 4 C -0.193 4.193 5 C 0.133 3.867 6 H 0.090 0.910 7 C 0.047 3.953 8 O -0.377 6.377 9 C 0.045 3.955 10 C 0.086 3.914 11 N -1.004 6.004 12 S 2.598 3.402 13 O -0.957 6.957 14 O -0.948 6.948 15 C -0.620 4.620 16 C -0.096 4.096 17 C -0.004 4.004 18 C -0.527 4.527 19 H 0.075 0.925 20 C 0.068 3.932 21 N -0.900 5.900 22 Si 0.879 3.121 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.266 1.266 26 H 0.040 0.960 27 H 0.087 0.913 28 H 0.040 0.960 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.146 0.854 32 H 0.079 0.921 33 H 0.060 0.940 34 H 0.105 0.895 35 H 0.058 0.942 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.080 0.920 39 H 0.130 0.870 40 H 0.127 0.873 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.020 0.980 44 H 0.015 0.985 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.400 20.540 8.267 25.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.303 6.303 3 C -0.005 4.005 4 C -0.231 4.231 5 C 0.026 3.974 6 H 0.108 0.892 7 C -0.032 4.032 8 O -0.295 6.295 9 C -0.034 4.034 10 C -0.040 4.040 11 N -0.841 5.841 12 S 2.696 3.304 13 O -0.947 6.947 14 O -0.938 6.938 15 C -0.751 4.751 16 C -0.136 4.136 17 C -0.042 4.042 18 C -0.565 4.565 19 H 0.093 0.907 20 C -0.133 4.133 21 N -0.538 5.538 22 Si 0.706 3.294 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.191 1.191 26 H 0.059 0.941 27 H 0.106 0.894 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.164 0.836 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.123 0.877 35 H 0.077 0.923 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.098 0.902 39 H 0.148 0.852 40 H 0.145 0.855 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.039 0.961 44 H 0.033 0.967 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.897 20.043 8.970 24.975 hybrid contribution -0.721 0.382 -1.701 1.887 sum -12.618 20.425 7.268 25.084 Atomic orbital electron populations 1.22761 0.80931 1.03046 0.99796 1.87958 1.19667 1.27328 1.95346 1.22328 0.92750 0.85199 1.00249 1.22909 0.95549 0.96854 1.07800 1.21468 0.79150 0.96286 1.00483 0.89165 1.23162 0.96728 0.85628 0.97655 1.87953 1.19090 1.29357 1.93086 1.23033 0.81932 1.01217 0.97173 1.22131 0.96309 0.85155 1.00366 1.58068 1.13994 1.21961 1.90097 1.05514 0.73520 0.72930 0.78405 1.93553 1.34320 1.82638 1.84185 1.93494 1.69482 1.69813 1.61011 1.30842 1.10925 1.10357 1.22947 1.21317 0.99640 0.89613 1.03006 1.19526 0.97263 0.96860 0.90576 1.21122 1.36254 1.01039 0.98061 0.90705 1.25011 0.94868 0.94675 0.98765 1.69906 1.44268 1.13413 1.26249 0.86793 0.80393 0.79167 0.83015 1.20232 1.21220 1.19063 0.94093 0.89401 0.94091 0.93216 0.92770 0.83605 0.90303 0.92126 0.87734 0.92343 0.87506 0.87611 0.90207 0.85183 0.85464 0.91024 0.90820 0.96136 0.96681 0.92611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.38 -4.66 10.70 -35.23 -0.38 -5.04 16 3 C 0.07 0.68 5.37 37.16 0.20 0.88 16 4 C -0.19 -2.16 3.85 -26.73 -0.10 -2.26 16 5 C 0.13 1.29 3.19 -67.42 -0.21 1.08 16 6 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 7 C 0.05 0.39 5.60 37.31 0.21 0.60 16 8 O -0.38 -3.57 10.74 -35.23 -0.38 -3.95 16 9 C 0.04 0.36 6.99 37.31 0.26 0.62 16 10 C 0.09 0.79 6.56 -3.53 -0.02 0.77 16 11 N -1.00 -11.17 3.26 -106.03 -0.35 -11.52 16 12 S 2.60 37.56 4.85 -107.50 -0.52 37.04 16 13 O -0.96 -16.23 16.51 -57.54 -0.95 -17.18 16 14 O -0.95 -15.75 14.17 -57.54 -0.82 -16.56 16 15 C -0.62 -9.05 5.95 37.16 0.22 -8.83 16 16 C -0.10 -1.88 5.16 -26.73 -0.14 -2.02 16 17 C 0.00 -0.08 4.04 -27.88 -0.11 -0.20 16 18 C -0.53 -15.01 9.66 -34.44 -0.33 -15.34 16 19 H 0.07 2.29 7.99 -52.49 -0.42 1.87 16 20 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 21 N -0.90 -27.72 13.96 55.43 0.77 -26.94 16 22 Si 0.88 21.44 27.47 -169.99 -4.67 16.77 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 26 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.05 0.37 6.89 -51.93 -0.36 0.01 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.15 2.00 5.24 -52.05 -0.27 1.73 16 32 H 0.08 0.90 5.12 -51.93 -0.27 0.63 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.10 0.67 7.00 -51.93 -0.36 0.30 16 35 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 36 H 0.11 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.11 0.96 6.94 -51.93 -0.36 0.60 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.13 1.70 5.67 -51.92 -0.29 1.40 16 40 H 0.13 1.59 8.14 -51.92 -0.42 1.16 16 41 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 42 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 43 H 0.02 0.47 7.20 -51.93 -0.37 0.10 16 44 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 16 45 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 360.90 15.07 5.44 5.44 Total: -1.00 -35.84 360.90 -8.21 -44.04 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -7.34 Total: -0.65 kcal Atomic # 6 Polarization: -22.42 SS G_CDS: 0.98 Total: -21.44 kcal Atomic # 7 Polarization: -38.89 SS G_CDS: 0.43 Total: -38.46 kcal Atomic # 8 Polarization: -40.22 SS G_CDS: -2.52 Total: -42.74 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Atomic # 16 Polarization: 37.56 SS G_CDS: -0.52 Total: 37.04 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.84 -8.21 -44.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367911429.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.427 kcal (2) G-P(sol) polarization free energy of solvation -35.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds