Wall clock time and date at job start Fri Apr 10 2020 18:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42908 * 113.99712 * 2 1 4 4 C 1.52999 * 109.46884 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.46823 * 185.17473 * 4 3 2 6 6 H 1.09004 * 109.67889 * 63.31309 * 5 4 3 7 7 C 1.53295 * 109.68135 * 302.80036 * 5 4 3 8 8 O 1.42957 * 109.22005 * 187.97606 * 7 5 4 9 9 C 1.42965 * 114.17111 * 62.57767 * 8 7 5 10 10 C 1.53295 * 109.21957 * 297.42126 * 9 8 7 11 11 N 1.47147 * 109.68247 * 183.83163 * 5 4 3 12 12 S 1.65608 * 120.97991 * 350.23697 * 11 5 4 13 13 O 1.42100 * 104.27225 * 196.27359 * 12 11 5 14 14 O 1.42107 * 104.27546 * 324.12559 * 12 11 5 15 15 C 1.81396 * 104.45037 * 80.19933 * 12 11 5 16 16 C 1.52995 * 109.46837 * 179.97438 * 15 12 11 17 17 C 1.53004 * 109.46981 * 179.97438 * 16 15 12 18 18 C 1.50700 * 109.47160 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00096 * 0.02562 * 18 17 16 20 20 C 1.37882 * 119.99945 * 180.02562 * 18 17 16 21 21 N 1.31507 * 119.99867 * 180.02562 * 20 18 17 22 22 Si 1.86794 * 120.00096 * 359.97438 * 20 18 17 23 23 H 1.48506 * 109.46995 * 89.99940 * 22 20 18 24 24 H 1.48496 * 109.47298 * 210.00243 * 22 20 18 25 25 H 1.48508 * 109.47233 * 330.00497 * 22 20 18 26 26 H 1.08999 * 109.46923 * 299.99745 * 1 2 3 27 27 H 1.09000 * 109.46462 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47105 * 60.00216 * 1 2 3 29 29 H 1.09006 * 109.46828 * 300.00333 * 3 2 1 30 30 H 1.09003 * 109.46494 * 59.99902 * 3 2 1 31 31 H 1.08999 * 109.46807 * 305.16871 * 4 3 2 32 32 H 1.08991 * 109.47412 * 65.17485 * 4 3 2 33 33 H 1.09000 * 109.50825 * 307.89925 * 7 5 4 34 34 H 1.08996 * 109.51426 * 68.05210 * 7 5 4 35 35 H 1.09009 * 109.50943 * 57.33975 * 9 8 7 36 36 H 1.08996 * 109.51480 * 177.49170 * 9 8 7 37 37 H 1.08998 * 109.67892 * 172.02503 * 10 9 8 38 38 H 1.09003 * 109.68100 * 292.53344 * 10 9 8 39 39 H 1.09003 * 109.46883 * 300.00047 * 15 12 11 40 40 H 1.09001 * 109.46969 * 59.99850 * 15 12 11 41 41 H 1.09003 * 109.47515 * 299.99774 * 16 15 12 42 42 H 1.09001 * 109.47371 * 60.00209 * 16 15 12 43 43 H 1.09003 * 109.46926 * 300.00275 * 17 16 15 44 44 H 1.09001 * 109.46783 * 59.99990 * 17 16 15 45 45 H 0.97003 * 120.00099 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 4.1573 2.5767 0.1295 6 1 3.8791 3.0148 1.0880 7 6 3.6608 3.4726 -1.0111 8 8 4.3848 4.7051 -0.9906 9 6 5.7901 4.5623 -1.2111 10 6 6.3955 3.7221 -0.0808 11 7 5.6224 2.4756 0.0372 12 16 6.3786 1.0025 0.0648 13 8 7.7370 1.3113 0.3453 14 8 5.6021 0.2268 0.9675 15 6 6.2051 0.3729 -1.6275 16 6 6.8727 -0.9998 -1.7318 17 6 6.7259 -1.5312 -3.1591 18 6 7.3839 -2.8830 -3.2620 19 1 7.8590 -3.3197 -2.3960 20 6 7.3795 -3.5623 -4.4619 21 7 7.9534 -4.7422 -4.5515 22 14 6.5573 -2.8074 -5.9596 23 1 7.5467 -1.9922 -6.7092 24 1 6.0394 -3.8876 -6.8371 25 1 5.4321 -1.9420 -5.5231 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 1.6885 1.8465 -0.8900 30 1 1.6885 1.8464 0.8900 31 1 3.8512 0.5659 0.8392 32 1 3.8632 0.7262 -0.9335 33 1 3.8230 2.9708 -1.9650 34 1 2.5974 3.6728 -0.8803 35 1 5.9601 4.0644 -2.1659 36 1 6.2585 5.5464 -1.2243 37 1 7.4347 3.4891 -0.3127 38 1 6.3440 4.2762 0.8565 39 1 5.1474 0.2827 -1.8750 40 1 6.6834 1.0629 -2.3227 41 1 7.9304 -0.9093 -1.4845 42 1 6.3948 -1.6900 -1.0366 43 1 5.6680 -1.6218 -3.4060 44 1 7.2035 -0.8411 -3.8546 45 1 7.9500 -5.2203 -5.3955 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000367911429.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:18 Heat of formation + Delta-G solvation = -182.644498 kcal Electronic energy + Delta-G solvation = -26837.250256 eV Core-core repulsion = 22981.565281 eV Total energy + Delta-G solvation = -3855.684975 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.63309 -38.92270 -38.39737 -37.19247 -36.57488 -36.27900 -34.37012 -34.11503 -30.40638 -30.21642 -27.98285 -27.05842 -25.52400 -25.40826 -23.02120 -22.68865 -21.72661 -20.07877 -19.05151 -18.62554 -17.95741 -17.61680 -17.35983 -16.99547 -16.64213 -16.38592 -16.25444 -16.20450 -15.91852 -15.70657 -15.52072 -15.31097 -14.89168 -14.29960 -14.05042 -13.75422 -13.58417 -13.41224 -13.29706 -13.23022 -13.14758 -12.82467 -12.75013 -12.67988 -12.48295 -12.38118 -12.02920 -11.91398 -11.84329 -11.63751 -11.52831 -11.43041 -11.29340 -10.94562 -10.79204 -10.53399 -9.83759 -8.31482 -6.37566 -0.89052 1.34646 1.37651 1.46946 1.49111 2.34686 2.66476 2.68331 2.94153 3.02168 3.03758 3.49134 3.60935 3.71995 3.75021 3.92444 4.00160 4.16312 4.21349 4.22398 4.28829 4.36674 4.44780 4.52985 4.54492 4.57637 4.61486 4.65308 4.69739 4.77559 4.90185 4.90780 4.92245 5.04562 5.07318 5.28900 5.31125 5.41526 5.46297 5.60150 6.14763 6.23225 6.30115 6.70294 7.27063 8.85611 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.010822 B = 0.004284 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2586.630100 B = 6533.886432 C = 7580.508641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.423 6.423 3 C 0.069 3.931 4 C -0.196 4.196 5 C 0.134 3.866 6 H 0.099 0.901 7 C 0.047 3.953 8 O -0.387 6.387 9 C 0.044 3.956 10 C 0.078 3.922 11 N -0.998 5.998 12 S 2.612 3.388 13 O -0.986 6.986 14 O -0.975 6.975 15 C -0.615 4.615 16 C -0.101 4.101 17 C -0.003 4.003 18 C -0.545 4.545 19 H 0.030 0.970 20 C 0.003 3.997 21 N -0.951 5.951 22 Si 0.953 3.047 23 H -0.263 1.263 24 H -0.284 1.284 25 H -0.240 1.240 26 H 0.055 0.945 27 H 0.087 0.913 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.116 0.884 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.128 0.872 35 H 0.065 0.935 36 H 0.130 0.870 37 H 0.105 0.895 38 H 0.088 0.912 39 H 0.150 0.850 40 H 0.155 0.845 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.030 0.970 44 H 0.032 0.968 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.508 23.909 6.823 28.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.343 6.343 3 C -0.007 4.007 4 C -0.234 4.234 5 C 0.028 3.972 6 H 0.117 0.883 7 C -0.031 4.031 8 O -0.305 6.305 9 C -0.034 4.034 10 C -0.047 4.047 11 N -0.837 5.837 12 S 2.710 3.290 13 O -0.976 6.976 14 O -0.965 6.965 15 C -0.745 4.745 16 C -0.140 4.140 17 C -0.042 4.042 18 C -0.583 4.583 19 H 0.048 0.952 20 C -0.194 4.194 21 N -0.592 5.592 22 Si 0.776 3.224 23 H -0.188 1.188 24 H -0.210 1.210 25 H -0.163 1.163 26 H 0.073 0.927 27 H 0.106 0.894 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.134 0.866 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.146 0.854 35 H 0.083 0.917 36 H 0.148 0.852 37 H 0.123 0.877 38 H 0.107 0.893 39 H 0.167 0.833 40 H 0.173 0.827 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.048 0.952 44 H 0.050 0.950 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.003 23.424 7.548 28.315 hybrid contribution -0.038 -0.699 -1.138 1.335 sum -14.041 22.725 6.411 27.471 Atomic orbital electron populations 1.22931 0.79294 1.03627 1.01245 1.87901 1.21669 1.29066 1.95671 1.22464 0.91316 0.84682 1.02286 1.22848 0.97253 0.97188 1.06152 1.21612 0.77870 0.95832 1.01918 0.88300 1.23272 0.97832 0.85021 0.96986 1.87951 1.19715 1.29779 1.93055 1.23175 0.81378 1.02225 0.96597 1.22389 0.96261 0.84325 1.01691 1.57792 1.14856 1.21216 1.89873 1.04851 0.72717 0.73402 0.78002 1.93510 1.36219 1.83324 1.84593 1.93491 1.69792 1.71250 1.61996 1.30768 1.11904 1.07761 1.24109 1.21160 0.99859 0.92404 1.00587 1.19487 0.97110 0.94328 0.93250 1.21532 1.36309 1.03576 0.96844 0.95205 1.26088 0.95556 0.95046 1.02705 1.70078 1.46214 1.15406 1.27477 0.85619 0.80098 0.78663 0.78065 1.18753 1.21012 1.16336 0.92657 0.89424 0.92560 0.90670 0.91086 0.86567 0.90837 0.91566 0.85419 0.91687 0.85210 0.87686 0.89337 0.83251 0.82695 0.91815 0.92015 0.95157 0.95011 0.92379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 11.01 113.37 1.25 1.62 16 2 O -0.42 -9.74 10.70 -148.98 -1.59 -11.33 16 3 C 0.07 1.15 5.37 71.98 0.39 1.54 16 4 C -0.20 -4.09 3.85 30.60 0.12 -3.98 16 5 C 0.13 2.28 3.19 44.97 0.14 2.42 16 6 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 7 C 0.05 0.61 5.60 72.08 0.40 1.01 16 8 O -0.39 -5.89 10.74 -148.98 -1.60 -7.49 16 9 C 0.04 0.55 6.99 72.08 0.50 1.05 16 10 C 0.08 1.25 6.56 86.35 0.57 1.82 16 11 N -1.00 -20.35 3.26 -489.36 -1.60 -21.95 16 12 S 2.61 74.25 4.85 -56.49 -0.27 73.97 16 13 O -0.99 -33.41 16.51 -127.65 -2.11 -35.51 16 14 O -0.98 -33.01 14.17 -127.65 -1.81 -34.82 16 15 C -0.61 -16.96 5.95 71.98 0.43 -16.53 16 16 C -0.10 -3.95 5.16 30.59 0.16 -3.79 16 17 C 0.00 -0.15 4.04 29.85 0.12 -0.03 16 18 C -0.54 -31.88 9.66 25.60 0.25 -31.63 16 19 H 0.03 1.93 7.99 -2.91 -0.02 1.91 16 20 C 0.00 0.17 5.47 84.66 0.46 0.63 16 21 N -0.95 -60.35 13.96 21.45 0.30 -60.05 16 22 Si 0.95 43.38 27.47 68.60 1.88 45.27 16 23 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 24 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 25 H -0.24 -9.86 6.54 99.48 0.65 -9.21 16 26 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.08 0.85 6.89 -2.38 -0.02 0.83 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.12 3.21 5.24 -4.31 -0.02 3.18 16 32 H 0.07 1.56 5.12 -2.39 -0.01 1.55 16 33 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.13 1.06 7.00 -2.39 -0.02 1.04 16 35 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 36 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.10 1.72 6.94 -2.39 -0.02 1.70 16 38 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.15 3.55 5.67 -2.39 -0.01 3.54 16 40 H 0.15 3.39 8.14 -2.39 -0.02 3.37 16 41 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 42 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 43 H 0.03 1.33 7.20 -2.39 -0.02 1.31 16 44 H 0.03 1.35 7.57 -2.39 -0.02 1.33 16 45 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -80.21 360.90 -1.11 -81.32 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: 0.90 Total: 16.45 kcal Atomic # 6 Polarization: -50.64 SS G_CDS: 4.79 Total: -45.85 kcal Atomic # 7 Polarization: -80.70 SS G_CDS: -1.30 Total: -81.99 kcal Atomic # 8 Polarization: -82.05 SS G_CDS: -7.11 Total: -89.16 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 1.88 Total: 45.27 kcal Atomic # 16 Polarization: 74.25 SS G_CDS: -0.27 Total: 73.97 kcal Total: -80.21 -1.11 -81.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367911429.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.325 kcal (2) G-P(sol) polarization free energy of solvation -80.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds