Wall clock time and date at job start Fri Apr 10 2020 18:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47237 * 2 1 4 4 O 1.42903 * 109.47006 * 119.99901 * 2 1 3 5 5 C 1.42904 * 113.99633 * 149.99532 * 4 2 1 6 6 C 1.53008 * 109.46658 * 179.97438 * 5 4 2 7 7 H 1.09001 * 109.50982 * 55.10638 * 6 5 4 8 8 C 1.53716 * 109.44028 * 175.39138 * 6 5 4 9 9 N 1.47147 * 108.16297 * 172.37417 * 8 6 5 10 10 S 1.65600 * 120.98129 * 129.43010 * 9 8 6 11 11 O 1.42107 * 104.27629 * 153.65069 * 10 9 8 12 12 O 1.42102 * 104.27841 * 25.79206 * 10 9 8 13 13 C 1.81404 * 104.45074 * 269.72032 * 10 9 8 14 14 C 1.53000 * 109.46946 * 180.02562 * 13 10 9 15 15 C 1.50703 * 109.46912 * 180.02562 * 14 13 10 16 16 H 1.08001 * 119.99776 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00001 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00114 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99955 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46999 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46979 * 120.00420 * 19 17 15 22 22 H 1.48498 * 109.46942 * 240.00334 * 19 17 15 23 23 C 1.47159 * 118.03651 * 309.16216 * 9 8 6 24 24 C 1.53297 * 108.38311 * 50.78387 * 23 9 8 25 25 O 1.42960 * 109.51384 * 295.00276 * 6 5 4 26 26 H 1.09006 * 109.47228 * 299.99881 * 1 2 3 27 27 H 1.08997 * 109.47061 * 59.99774 * 1 2 3 28 28 H 1.08998 * 109.47254 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46830 * 239.99696 * 2 1 3 30 30 H 1.09005 * 109.47135 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47279 * 300.00092 * 3 2 1 32 32 H 1.09006 * 109.47440 * 59.99912 * 3 2 1 33 33 H 1.09003 * 109.47003 * 60.00826 * 5 4 2 34 34 H 1.08990 * 109.47397 * 300.00218 * 5 4 2 35 35 H 1.09000 * 109.83909 * 52.69474 * 8 6 5 36 36 H 1.09007 * 109.74636 * 292.00488 * 8 6 5 37 37 H 1.09002 * 109.47124 * 60.00022 * 13 10 9 38 38 H 1.09001 * 109.46975 * 300.00144 * 13 10 9 39 39 H 1.09001 * 109.47194 * 299.99756 * 14 13 10 40 40 H 1.08992 * 109.47399 * 59.99928 * 14 13 10 41 41 H 0.97000 * 120.00354 * 180.02562 * 18 17 15 42 42 H 1.08993 * 109.68283 * 170.50499 * 23 9 8 43 43 H 1.08994 * 109.67380 * 291.05930 * 23 9 8 44 44 H 1.08998 * 109.51328 * 67.62170 * 24 23 9 45 45 H 1.09002 * 109.50841 * 187.72921 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2659 -1.3246 0.9886 6 6 3.6760 -2.0082 2.2946 7 1 2.8824 -2.6820 2.6175 8 6 4.9721 -2.8037 2.0707 9 7 5.4400 -3.2952 3.3763 10 16 5.8310 -4.8892 3.5968 11 8 6.7738 -4.8749 4.6601 12 8 6.1955 -5.3432 2.3005 13 6 4.2811 -5.6659 4.1308 14 6 4.5149 -7.1588 4.3704 15 6 3.2271 -7.8041 4.8134 16 1 2.3314 -7.2090 4.9136 17 6 3.1921 -9.1545 5.0899 18 7 4.2827 -9.8792 4.9674 19 14 1.5960 -9.9542 5.6397 20 1 0.5233 -8.9291 5.6985 21 1 1.2146 -11.0143 4.6721 22 1 1.7813 -10.5553 6.9849 23 6 5.5559 -2.3273 4.4787 24 6 4.2364 -1.5540 4.5838 25 8 3.9012 -1.0185 3.3013 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 3.1301 1.4424 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 4.0200 -0.5874 0.7125 34 1 3.1808 -2.0707 0.1987 35 1 5.7307 -2.1580 1.6282 36 1 4.7765 -3.6477 1.4092 37 1 3.5242 -5.5358 3.3573 38 1 3.9402 -5.1989 5.0548 39 1 4.8560 -7.6260 3.4466 40 1 5.2716 -7.2885 5.1441 41 1 4.2580 -10.8293 5.1615 42 1 5.7471 -2.8557 5.4126 43 1 6.3722 -1.6345 4.2745 44 1 3.4456 -2.2268 4.9155 45 1 4.3473 -0.7407 5.3011 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000372213127.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:32 Heat of formation + Delta-G solvation = -198.231703 kcal Electronic energy + Delta-G solvation = -26146.698918 eV Core-core repulsion = 22290.338032 eV Total energy + Delta-G solvation = -3856.360887 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.54226 -39.03486 -38.29646 -37.09849 -35.94229 -35.80196 -34.21734 -33.15290 -32.50238 -29.02437 -28.06436 -27.62856 -26.49382 -24.13859 -23.51666 -22.26346 -21.81649 -20.02903 -19.22140 -18.43745 -17.95889 -17.76073 -17.18497 -17.15380 -16.57132 -16.39587 -16.05877 -15.89025 -15.76104 -15.20060 -15.08004 -14.98663 -14.49481 -14.01166 -13.76048 -13.74259 -13.47707 -13.33815 -13.26353 -13.23868 -13.00098 -12.97211 -12.82262 -12.81399 -12.57180 -12.29142 -12.28191 -12.15402 -12.14146 -11.85670 -11.57116 -11.50117 -11.38920 -10.92196 -10.67151 -10.47973 -9.84031 -8.27829 -6.41859 -0.80930 1.40282 1.40469 1.53866 1.58365 2.36662 2.60594 2.73898 2.80326 3.05685 3.10621 3.54358 3.78937 3.90089 3.99567 4.03719 4.06601 4.14918 4.18313 4.22575 4.28522 4.34644 4.38328 4.51146 4.56218 4.65351 4.72053 4.77637 4.80840 4.92400 4.96171 4.98512 5.00642 5.04454 5.23611 5.24873 5.32807 5.37630 5.42478 5.66684 6.04263 6.16301 6.36780 6.71894 7.28589 8.84590 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012797 B = 0.003399 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.551451 B = 8236.679109 C = 9606.068108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.071 3.929 3 C -0.171 4.171 4 O -0.398 6.398 5 C 0.069 3.931 6 C 0.079 3.921 7 H 0.069 0.931 8 C 0.092 3.908 9 N -1.001 6.001 10 S 2.615 3.385 11 O -0.988 6.988 12 O -0.989 6.989 13 C -0.587 4.587 14 C 0.022 3.978 15 C -0.538 4.538 16 H 0.075 0.925 17 C -0.003 4.003 18 N -0.934 5.934 19 Si 0.973 3.027 20 H -0.256 1.256 21 H -0.277 1.277 22 H -0.278 1.278 23 C 0.080 3.920 24 C 0.047 3.953 25 O -0.378 6.378 26 H 0.054 0.946 27 H 0.088 0.912 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.080 0.920 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.104 0.896 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.007 0.993 40 H 0.007 0.993 41 H 0.268 0.732 42 H 0.102 0.898 43 H 0.090 0.910 44 H 0.059 0.941 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.986 23.316 -8.493 25.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.014 3.986 3 C -0.228 4.228 4 O -0.318 6.318 5 C -0.008 4.008 6 C 0.019 3.981 7 H 0.087 0.913 8 C -0.033 4.033 9 N -0.840 5.840 10 S 2.713 3.287 11 O -0.979 6.979 12 O -0.979 6.979 13 C -0.719 4.719 14 C -0.017 4.017 15 C -0.577 4.577 16 H 0.093 0.907 17 C -0.201 4.201 18 N -0.573 5.573 19 Si 0.797 3.203 20 H -0.180 1.180 21 H -0.203 1.203 22 H -0.203 1.203 23 C -0.044 4.044 24 C -0.031 4.031 25 O -0.296 6.296 26 H 0.074 0.926 27 H 0.106 0.894 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.099 0.901 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.113 0.887 36 H 0.123 0.877 37 H 0.157 0.843 38 H 0.158 0.842 39 H 0.026 0.974 40 H 0.025 0.975 41 H 0.077 0.923 42 H 0.120 0.880 43 H 0.109 0.891 44 H 0.078 0.922 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.130 23.000 -8.484 24.861 hybrid contribution -0.751 -1.139 0.407 1.424 sum -4.881 21.861 -8.077 23.811 Atomic orbital electron populations 1.21880 0.93150 1.02594 1.03001 1.22305 0.95498 0.92916 0.87844 1.22260 1.01417 0.96327 1.02794 1.87956 1.36393 1.70456 1.36956 1.22540 0.86395 0.96893 0.94954 1.22574 0.95499 0.90596 0.89426 0.91283 1.22207 0.96692 1.00494 0.83918 1.57753 1.83354 1.24571 1.18278 1.04786 0.77427 0.73101 0.73337 1.93499 1.59883 1.85891 1.58578 1.93493 1.82718 1.80929 1.40743 1.30403 1.20549 1.08033 1.12953 1.18816 0.98358 0.88136 0.96416 1.21531 0.95995 0.94173 1.46031 0.90730 1.26102 1.00520 0.98213 0.95314 1.70099 1.30008 1.07622 1.49595 0.85276 0.78717 0.78464 0.77872 1.18006 1.20301 1.20333 1.22349 1.00055 0.92462 0.89576 1.23147 0.94681 0.99687 0.85614 1.87977 1.89932 1.32429 1.19311 0.92648 0.89359 0.92504 0.90943 0.92677 0.90071 0.92800 0.91409 0.89665 0.88679 0.87749 0.84253 0.84161 0.97442 0.97453 0.92348 0.87983 0.89144 0.92235 0.85126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.56 71.98 0.69 -1.31 16 2 C 0.07 1.07 3.34 30.59 0.10 1.18 16 3 C -0.17 -2.23 9.53 71.98 0.69 -1.55 16 4 O -0.40 -8.28 9.95 -144.45 -1.44 -9.72 16 5 C 0.07 1.22 5.42 71.98 0.39 1.61 16 6 C 0.08 1.63 3.08 30.84 0.09 1.73 16 7 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 8 C 0.09 2.00 5.82 86.50 0.50 2.51 16 9 N -1.00 -25.90 3.27 -510.85 -1.67 -27.57 16 10 S 2.62 92.68 5.42 -56.49 -0.31 92.38 16 11 O -0.99 -40.49 16.81 -127.65 -2.15 -42.64 16 12 O -0.99 -40.28 16.80 -127.65 -2.14 -42.42 16 13 C -0.59 -21.96 6.12 71.98 0.44 -21.52 16 14 C 0.02 1.12 4.98 29.85 0.15 1.27 16 15 C -0.54 -29.68 9.11 25.60 0.23 -29.45 16 16 H 0.07 3.81 7.74 -2.91 -0.02 3.79 16 17 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 18 N -0.93 -56.54 13.29 21.45 0.28 -56.26 16 19 Si 0.97 43.11 29.54 68.60 2.03 45.13 16 20 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 21 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 22 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 23 C 0.08 1.70 6.50 86.35 0.56 2.26 16 24 C 0.05 0.86 6.98 72.08 0.50 1.37 16 25 O -0.38 -8.40 10.35 -144.45 -1.49 -9.89 16 26 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 27 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.07 0.88 7.79 -2.39 -0.02 0.86 16 30 H 0.05 0.74 7.87 -2.38 -0.02 0.72 16 31 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 33 H 0.07 1.06 7.87 -2.39 -0.02 1.04 16 34 H 0.09 1.17 8.08 -2.39 -0.02 1.15 16 35 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.10 2.22 7.22 -2.38 -0.02 2.21 16 37 H 0.14 4.58 8.14 -2.39 -0.02 4.56 16 38 H 0.14 4.59 8.14 -2.39 -0.02 4.57 16 39 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 41 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 42 H 0.10 2.16 7.23 -2.39 -0.02 2.14 16 43 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -76.21 378.73 -1.13 -77.34 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: 0.95 Total: 15.25 kcal Atomic # 6 Polarization: -46.42 SS G_CDS: 4.81 Total: -41.60 kcal Atomic # 7 Polarization: -82.44 SS G_CDS: -1.38 Total: -83.82 kcal Atomic # 8 Polarization: -97.45 SS G_CDS: -7.22 Total: -104.67 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 16 Polarization: 92.68 SS G_CDS: -0.31 Total: 92.38 kcal Total: -76.21 -1.13 -77.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000372213127.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.889 kcal (2) G-P(sol) polarization free energy of solvation -76.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds