Wall clock time and date at job start Fri Apr 10 2020 18:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.47012 * 2 1 4 4 O 1.42901 * 109.46613 * 119.99783 * 2 1 3 5 5 C 1.42906 * 113.99820 * 90.00389 * 4 2 1 6 6 C 1.53001 * 109.46910 * 179.97438 * 5 4 2 7 7 H 1.09003 * 109.55188 * 304.87030 * 6 5 4 8 8 C 1.52881 * 109.58177 * 184.88025 * 6 5 4 9 9 N 1.47151 * 108.60875 * 187.92245 * 8 6 5 10 10 S 1.65601 * 120.98380 * 230.50127 * 9 8 6 11 11 O 1.42097 * 104.27457 * 153.64517 * 10 9 8 12 12 O 1.42099 * 104.27406 * 25.78985 * 10 9 8 13 13 C 1.81399 * 104.44941 * 269.72063 * 10 9 8 14 14 C 1.52993 * 109.47297 * 180.02562 * 13 10 9 15 15 C 1.50696 * 109.47432 * 179.97438 * 14 13 10 16 16 H 1.07999 * 119.99822 * 359.97438 * 15 14 13 17 17 C 1.37884 * 120.00126 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99707 * 180.02562 * 17 15 14 19 19 Si 1.86796 * 119.99956 * 0.27447 * 17 15 14 20 20 H 1.48503 * 109.47407 * 269.72718 * 19 17 15 21 21 H 1.48505 * 109.47281 * 29.72474 * 19 17 15 22 22 H 1.48501 * 109.47274 * 149.72572 * 19 17 15 23 23 C 1.47155 * 118.03118 * 50.22627 * 9 8 6 24 24 C 1.53290 * 108.38481 * 309.71558 * 23 9 8 25 25 O 1.42955 * 109.22406 * 52.30613 * 24 23 9 26 26 H 1.09001 * 109.47023 * 299.99716 * 1 2 3 27 27 H 1.09000 * 109.47130 * 60.00086 * 1 2 3 28 28 H 1.09005 * 109.46919 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46776 * 239.99554 * 2 1 3 30 30 H 1.08994 * 109.47086 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47102 * 299.99931 * 3 2 1 32 32 H 1.09002 * 109.47651 * 59.99598 * 3 2 1 33 33 H 1.08999 * 109.46954 * 59.99416 * 5 4 2 34 34 H 1.08999 * 109.46829 * 299.99346 * 5 4 2 35 35 H 1.09002 * 109.61726 * 68.10542 * 8 6 5 36 36 H 1.08997 * 109.52139 * 307.69120 * 8 6 5 37 37 H 1.08996 * 109.47515 * 59.99577 * 13 10 9 38 38 H 1.09000 * 109.46795 * 299.99857 * 13 10 9 39 39 H 1.08996 * 109.47340 * 59.99278 * 14 13 10 40 40 H 1.09004 * 109.46672 * 300.00041 * 14 13 10 41 41 H 0.97005 * 119.99656 * 179.97438 * 18 17 15 42 42 H 1.08995 * 109.67997 * 69.44456 * 23 9 8 43 43 H 1.09007 * 109.67814 * 189.95431 * 23 9 8 44 44 H 1.09004 * 109.50980 * 172.23173 * 24 23 9 45 45 H 1.09000 * 109.51169 * 292.37878 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2000 -2.0782 0.9887 6 6 2.7089 -2.6925 2.2943 7 1 3.6093 -2.1696 2.6169 8 6 3.0325 -4.1702 2.0734 9 7 3.3354 -4.7844 3.3759 10 16 4.7087 -5.6834 3.5958 11 8 4.9841 -5.5681 4.9850 12 8 5.6160 -5.1802 2.6248 13 6 4.2108 -7.3784 3.1839 14 6 5.4079 -8.3164 3.3508 15 6 4.9942 -9.7246 3.0092 16 1 3.9789 -9.9301 2.7040 17 6 5.9120 -10.7507 3.0864 18 7 5.5510 -11.9796 2.7878 19 14 7.6662 -10.3965 3.6218 20 1 8.4946 -10.0856 2.4291 21 1 7.6763 -9.2354 4.5477 22 1 8.2224 -11.5866 4.3142 23 6 2.3850 -4.5709 4.4789 24 6 2.0957 -3.0692 4.5840 25 8 1.7015 -2.5749 3.3018 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 3.1299 1.4424 -0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 2.9319 -2.2467 0.1987 34 1 1.2537 -2.5433 0.7125 35 1 3.8964 -4.2612 1.4149 36 1 2.1734 -4.6679 1.6237 37 1 3.8620 -7.4140 2.1518 38 1 3.4075 -7.6931 3.8499 39 1 5.7563 -8.2806 4.3830 40 1 6.2116 -8.0017 2.6851 41 1 6.1968 -12.7014 2.8417 42 1 1.4596 -5.1098 4.2755 43 1 2.8200 -4.9278 5.4125 44 1 1.2920 -2.9027 5.3013 45 1 2.9938 -2.5478 4.9149 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000372213130.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:38 Heat of formation + Delta-G solvation = -168.064457 kcal Electronic energy + Delta-G solvation = -25952.879986 eV Core-core repulsion = 22097.827249 eV Total energy + Delta-G solvation = -3855.052737 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -39.73072 -38.33975 -36.90097 -35.69980 -34.87087 -33.99168 -33.56060 -31.77392 -31.52398 -28.20046 -27.52849 -26.07091 -25.59158 -23.22628 -21.66265 -21.33547 -21.02128 -18.77667 -17.90764 -17.19659 -17.05338 -16.97435 -15.99722 -15.86521 -15.50499 -15.17466 -15.03831 -14.85432 -14.44350 -14.38745 -14.06470 -13.69762 -13.31725 -13.03430 -12.84261 -12.80371 -12.52765 -12.44917 -12.05097 -11.95156 -11.93151 -11.82390 -11.70326 -11.49484 -11.38793 -11.29352 -11.25697 -10.97211 -10.67336 -10.48409 -10.34314 -10.16984 -9.82897 -9.74395 -9.45098 -8.83046 -8.69749 -6.19918 -4.21510 0.50911 2.71509 3.23731 3.29305 3.31342 3.35143 3.51087 4.08967 4.32584 4.33541 4.52239 4.53336 4.65030 4.71010 4.80328 4.87728 4.89824 5.03255 5.10509 5.12320 5.13078 5.24389 5.26910 5.30014 5.37770 5.43916 5.46974 5.49238 5.52287 5.53232 5.63710 5.78273 5.85366 5.90903 5.92687 6.22535 6.37443 6.76459 6.88820 6.93922 7.02467 7.50727 8.32870 8.80978 9.39473 10.92384 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.024639 B = 0.002738 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.147125 B =10224.426706 C =10496.209328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.079 3.921 3 C -0.150 4.150 4 O -0.374 6.374 5 C 0.071 3.929 6 C 0.084 3.916 7 H 0.072 0.928 8 C 0.091 3.909 9 N -1.007 6.007 10 S 2.587 3.413 11 O -0.961 6.961 12 O -0.962 6.962 13 C -0.579 4.579 14 C -0.007 4.007 15 C -0.520 4.520 16 H 0.078 0.922 17 C 0.072 3.928 18 N -0.895 5.895 19 Si 0.870 3.130 20 H -0.271 1.271 21 H -0.262 1.262 22 H -0.281 1.281 23 C 0.081 3.919 24 C 0.053 3.947 25 O -0.367 6.367 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.107 0.893 36 H 0.079 0.921 37 H 0.125 0.875 38 H 0.126 0.874 39 H 0.032 0.968 40 H 0.028 0.972 41 H 0.267 0.733 42 H 0.077 0.923 43 H 0.105 0.895 44 H 0.106 0.894 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.310 23.095 -3.601 25.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.022 3.978 3 C -0.207 4.207 4 O -0.293 6.293 5 C -0.006 4.006 6 C 0.024 3.976 7 H 0.090 0.910 8 C -0.035 4.035 9 N -0.844 5.844 10 S 2.686 3.314 11 O -0.951 6.951 12 O -0.952 6.952 13 C -0.713 4.713 14 C -0.046 4.046 15 C -0.559 4.559 16 H 0.096 0.904 17 C -0.131 4.131 18 N -0.532 5.532 19 Si 0.696 3.304 20 H -0.197 1.197 21 H -0.186 1.186 22 H -0.207 1.207 23 C -0.045 4.045 24 C -0.026 4.026 25 O -0.285 6.285 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.125 0.875 36 H 0.097 0.903 37 H 0.144 0.856 38 H 0.144 0.856 39 H 0.051 0.949 40 H 0.046 0.954 41 H 0.077 0.923 42 H 0.096 0.904 43 H 0.124 0.876 44 H 0.124 0.876 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.556 23.457 -3.179 25.527 hybrid contribution 0.524 -0.788 -0.144 0.957 sum -9.033 22.669 -3.322 24.628 Atomic orbital electron populations 1.22289 0.95959 1.02471 1.02451 1.22091 0.93762 0.93823 0.88148 1.21857 1.01831 0.94546 1.02460 1.87985 1.86573 1.19345 1.35407 1.22472 1.00523 0.82252 0.95352 1.22271 0.92232 0.94339 0.88752 0.90954 1.21883 1.03268 0.93150 0.85225 1.57990 1.41992 1.67072 1.17296 1.05818 0.73303 0.77787 0.74485 1.93538 1.82624 1.86562 1.32385 1.93534 1.60492 1.78519 1.62683 1.30317 1.10835 1.18588 1.11517 1.19420 0.90932 0.96272 0.98025 1.20835 0.99243 0.88777 1.47060 0.90409 1.24993 0.98840 0.94917 0.94378 1.69882 1.35363 0.99801 1.48201 0.86920 0.85026 0.78633 0.79835 1.19655 1.18635 1.20699 1.22162 0.93817 0.97941 0.90557 1.22904 1.01303 0.92774 0.85597 1.87981 1.39139 1.82729 1.18695 0.91725 0.91836 0.92388 0.92229 0.91978 0.91331 0.91771 0.91344 0.92108 0.87524 0.90324 0.85616 0.85569 0.94939 0.95386 0.92339 0.90447 0.87642 0.87623 0.92521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.25 9.53 37.16 0.35 -0.90 16 2 C 0.08 0.64 3.34 -26.73 -0.09 0.55 16 3 C -0.15 -1.03 9.56 37.15 0.36 -0.68 16 4 O -0.37 -4.05 9.95 -39.97 -0.40 -4.45 16 5 C 0.07 0.68 5.41 37.16 0.20 0.88 16 6 C 0.08 0.94 3.05 -26.79 -0.08 0.86 16 7 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 8 C 0.09 1.02 5.94 -3.75 -0.02 1.00 16 9 N -1.01 -13.12 3.28 -113.30 -0.37 -13.49 16 10 S 2.59 43.29 5.47 -107.50 -0.59 42.71 16 11 O -0.96 -18.31 16.62 -57.54 -0.96 -19.27 16 12 O -0.96 -18.20 16.61 -57.54 -0.96 -19.15 16 13 C -0.58 -10.40 6.12 37.15 0.23 -10.18 16 14 C -0.01 -0.17 4.05 -27.89 -0.11 -0.28 16 15 C -0.52 -14.40 9.66 -34.44 -0.33 -14.73 16 16 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 17 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 18 N -0.89 -26.86 13.96 55.43 0.77 -26.08 16 19 Si 0.87 21.31 27.47 -169.99 -4.67 16.64 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.26 -6.21 6.53 56.52 0.37 -5.84 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 23 C 0.08 0.89 6.67 -3.53 -0.02 0.87 16 24 C 0.05 0.55 6.98 37.31 0.26 0.81 16 25 O -0.37 -4.43 10.35 -39.97 -0.41 -4.84 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.43 7.87 -51.93 -0.41 0.02 16 29 H 0.06 0.41 7.79 -51.93 -0.40 0.00 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 34 H 0.06 0.53 7.87 -51.93 -0.41 0.12 16 35 H 0.11 1.19 6.87 -51.93 -0.36 0.83 16 36 H 0.08 0.74 8.13 -51.93 -0.42 0.32 16 37 H 0.13 2.04 8.14 -51.93 -0.42 1.62 16 38 H 0.13 2.07 8.14 -51.92 -0.42 1.64 16 39 H 0.03 0.76 7.19 -51.93 -0.37 0.39 16 40 H 0.03 0.65 7.58 -51.93 -0.39 0.25 16 41 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.11 1.17 6.88 -51.93 -0.36 0.81 16 44 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 374.36 15.07 5.64 5.64 Total: -1.00 -34.85 374.36 -9.08 -43.93 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -7.78 Total: -1.81 kcal Atomic # 6 Polarization: -20.47 SS G_CDS: 0.64 Total: -19.84 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 0.40 Total: -39.57 kcal Atomic # 8 Polarization: -44.99 SS G_CDS: -2.72 Total: -47.71 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Atomic # 16 Polarization: 43.29 SS G_CDS: -0.59 Total: 42.71 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.85 -9.08 -43.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000372213130.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.131 kcal (2) G-P(sol) polarization free energy of solvation -34.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds