Wall clock time and date at job start Fri Apr 10 2020 18:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.47012 * 2 1 4 4 O 1.42901 * 109.46613 * 119.99783 * 2 1 3 5 5 C 1.42906 * 113.99820 * 90.00389 * 4 2 1 6 6 C 1.53001 * 109.46910 * 179.97438 * 5 4 2 7 7 H 1.09003 * 109.55188 * 304.87030 * 6 5 4 8 8 C 1.52881 * 109.58177 * 184.88025 * 6 5 4 9 9 N 1.47151 * 108.60875 * 187.92245 * 8 6 5 10 10 S 1.65601 * 120.98380 * 230.50127 * 9 8 6 11 11 O 1.42097 * 104.27457 * 153.64517 * 10 9 8 12 12 O 1.42099 * 104.27406 * 25.78985 * 10 9 8 13 13 C 1.81399 * 104.44941 * 269.72063 * 10 9 8 14 14 C 1.52993 * 109.47297 * 180.02562 * 13 10 9 15 15 C 1.50696 * 109.47432 * 179.97438 * 14 13 10 16 16 H 1.07999 * 119.99822 * 359.97438 * 15 14 13 17 17 C 1.37884 * 120.00126 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99707 * 180.02562 * 17 15 14 19 19 Si 1.86796 * 119.99956 * 0.27447 * 17 15 14 20 20 H 1.48503 * 109.47407 * 269.72718 * 19 17 15 21 21 H 1.48505 * 109.47281 * 29.72474 * 19 17 15 22 22 H 1.48501 * 109.47274 * 149.72572 * 19 17 15 23 23 C 1.47155 * 118.03118 * 50.22627 * 9 8 6 24 24 C 1.53290 * 108.38481 * 309.71558 * 23 9 8 25 25 O 1.42955 * 109.22406 * 52.30613 * 24 23 9 26 26 H 1.09001 * 109.47023 * 299.99716 * 1 2 3 27 27 H 1.09000 * 109.47130 * 60.00086 * 1 2 3 28 28 H 1.09005 * 109.46919 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46776 * 239.99554 * 2 1 3 30 30 H 1.08994 * 109.47086 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47102 * 299.99931 * 3 2 1 32 32 H 1.09002 * 109.47651 * 59.99598 * 3 2 1 33 33 H 1.08999 * 109.46954 * 59.99416 * 5 4 2 34 34 H 1.08999 * 109.46829 * 299.99346 * 5 4 2 35 35 H 1.09002 * 109.61726 * 68.10542 * 8 6 5 36 36 H 1.08997 * 109.52139 * 307.69120 * 8 6 5 37 37 H 1.08996 * 109.47515 * 59.99577 * 13 10 9 38 38 H 1.09000 * 109.46795 * 299.99857 * 13 10 9 39 39 H 1.08996 * 109.47340 * 59.99278 * 14 13 10 40 40 H 1.09004 * 109.46672 * 300.00041 * 14 13 10 41 41 H 0.97005 * 119.99656 * 179.97438 * 18 17 15 42 42 H 1.08995 * 109.67997 * 69.44456 * 23 9 8 43 43 H 1.09007 * 109.67814 * 189.95431 * 23 9 8 44 44 H 1.09004 * 109.50980 * 172.23173 * 24 23 9 45 45 H 1.09000 * 109.51169 * 292.37878 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2000 -2.0782 0.9887 6 6 2.7089 -2.6925 2.2943 7 1 3.6093 -2.1696 2.6169 8 6 3.0325 -4.1702 2.0734 9 7 3.3354 -4.7844 3.3759 10 16 4.7087 -5.6834 3.5958 11 8 4.9841 -5.5681 4.9850 12 8 5.6160 -5.1802 2.6248 13 6 4.2108 -7.3784 3.1839 14 6 5.4079 -8.3164 3.3508 15 6 4.9942 -9.7246 3.0092 16 1 3.9789 -9.9301 2.7040 17 6 5.9120 -10.7507 3.0864 18 7 5.5510 -11.9796 2.7878 19 14 7.6662 -10.3965 3.6218 20 1 8.4946 -10.0856 2.4291 21 1 7.6763 -9.2354 4.5477 22 1 8.2224 -11.5866 4.3142 23 6 2.3850 -4.5709 4.4789 24 6 2.0957 -3.0692 4.5840 25 8 1.7015 -2.5749 3.3018 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 3.1299 1.4424 -0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 2.9319 -2.2467 0.1987 34 1 1.2537 -2.5433 0.7125 35 1 3.8964 -4.2612 1.4149 36 1 2.1734 -4.6679 1.6237 37 1 3.8620 -7.4140 2.1518 38 1 3.4075 -7.6931 3.8499 39 1 5.7563 -8.2806 4.3830 40 1 6.2116 -8.0017 2.6851 41 1 6.1968 -12.7014 2.8417 42 1 1.4596 -5.1098 4.2755 43 1 2.8200 -4.9278 5.4125 44 1 1.2920 -2.9027 5.3013 45 1 2.9938 -2.5478 4.9149 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000372213130.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:36 Heat of formation + Delta-G solvation = -194.006548 kcal Electronic energy + Delta-G solvation = -25954.004919 eV Core-core repulsion = 22097.827249 eV Total energy + Delta-G solvation = -3856.177670 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -40.58165 -39.05348 -38.32310 -37.12255 -35.93224 -35.83076 -34.24489 -33.49036 -32.53155 -29.07209 -28.08507 -27.88509 -26.51553 -24.10783 -23.08949 -22.31720 -21.93939 -20.01136 -19.41607 -18.71557 -17.98893 -17.79992 -17.17744 -17.15270 -16.44359 -16.39127 -16.04983 -15.96359 -15.79425 -15.26119 -15.13190 -15.02683 -14.82107 -14.03184 -13.82247 -13.77524 -13.50673 -13.38080 -13.30927 -13.28510 -13.09144 -13.01652 -12.98356 -12.80874 -12.51356 -12.29992 -12.25484 -12.16052 -11.98468 -11.75353 -11.60587 -11.50443 -11.33014 -11.15792 -10.85558 -10.49781 -9.85080 -8.37645 -6.43588 -0.83833 1.31314 1.33426 1.43226 1.54108 2.28526 2.58476 2.72385 2.74664 2.96203 3.08911 3.53292 3.80463 3.88160 3.92559 4.01580 4.03343 4.13820 4.17293 4.23399 4.30649 4.34088 4.38092 4.49180 4.54357 4.55178 4.63244 4.75987 4.79205 4.90570 4.95151 4.97024 4.98938 5.02237 5.04559 5.09493 5.31763 5.36734 5.41007 5.45880 6.12984 6.15362 6.34976 6.62549 7.20836 8.77816 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.024639 B = 0.002738 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.147125 B =10224.426706 C =10496.209328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.071 3.929 3 C -0.149 4.149 4 O -0.399 6.399 5 C 0.071 3.929 6 C 0.083 3.917 7 H 0.057 0.943 8 C 0.085 3.915 9 N -1.001 6.001 10 S 2.615 3.385 11 O -0.984 6.984 12 O -0.984 6.984 13 C -0.584 4.584 14 C -0.017 4.017 15 C -0.527 4.527 16 H 0.049 0.951 17 C 0.013 3.987 18 N -0.939 5.939 19 Si 0.925 3.075 20 H -0.260 1.260 21 H -0.250 1.250 22 H -0.274 1.274 23 C 0.074 3.926 24 C 0.050 3.950 25 O -0.377 6.377 26 H 0.053 0.947 27 H 0.081 0.919 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.088 0.912 32 H 0.054 0.946 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.032 0.968 40 H 0.031 0.969 41 H 0.270 0.730 42 H 0.099 0.901 43 H 0.104 0.896 44 H 0.133 0.867 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.703 24.722 -3.952 27.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.014 3.986 3 C -0.206 4.206 4 O -0.319 6.319 5 C -0.006 4.006 6 C 0.023 3.977 7 H 0.075 0.925 8 C -0.040 4.040 9 N -0.840 5.840 10 S 2.714 3.286 11 O -0.974 6.974 12 O -0.974 6.974 13 C -0.716 4.716 14 C -0.056 4.056 15 C -0.566 4.566 16 H 0.068 0.932 17 C -0.186 4.186 18 N -0.579 5.579 19 Si 0.748 3.252 20 H -0.185 1.185 21 H -0.173 1.173 22 H -0.199 1.199 23 C -0.051 4.051 24 C -0.028 4.028 25 O -0.296 6.296 26 H 0.072 0.928 27 H 0.100 0.900 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.107 0.893 32 H 0.074 0.926 33 H 0.103 0.897 34 H 0.089 0.911 35 H 0.125 0.875 36 H 0.121 0.879 37 H 0.159 0.841 38 H 0.158 0.842 39 H 0.050 0.950 40 H 0.050 0.950 41 H 0.079 0.921 42 H 0.118 0.882 43 H 0.123 0.877 44 H 0.150 0.850 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.950 25.080 -3.531 27.212 hybrid contribution 0.513 -1.227 -0.059 1.331 sum -9.437 23.853 -3.591 25.902 Atomic orbital electron populations 1.22265 0.95393 1.02383 1.02801 1.22317 0.94282 0.94191 0.87801 1.21875 1.01527 0.94138 1.03030 1.87950 1.86944 1.19959 1.37055 1.22531 1.01469 0.81905 0.94712 1.22309 0.91731 0.94176 0.89487 0.92544 1.22120 1.04305 0.93325 0.84292 1.57679 1.41515 1.66043 1.18776 1.04736 0.73539 0.77004 0.73362 1.93504 1.83488 1.86707 1.33744 1.93501 1.62030 1.78613 1.63261 1.30309 1.09146 1.19047 1.13087 1.19380 0.93325 0.95087 0.97853 1.21162 0.98087 0.91214 1.46158 0.93236 1.25885 1.03302 0.94735 0.94649 1.70009 1.37009 1.00898 1.49978 0.86020 0.79977 0.79104 0.80109 1.18471 1.17317 1.19932 1.22427 0.94054 0.98752 0.89837 1.23051 1.02041 0.92050 0.85626 1.87977 1.39485 1.82881 1.19264 0.92803 0.90047 0.92670 0.90907 0.92462 0.89321 0.92641 0.89669 0.91112 0.87458 0.87896 0.84105 0.84211 0.94987 0.95024 0.92100 0.88243 0.87739 0.84961 0.93397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 9.53 71.98 0.69 -1.48 16 2 C 0.07 1.03 3.34 30.59 0.10 1.13 16 3 C -0.15 -1.84 9.56 71.98 0.69 -1.16 16 4 O -0.40 -8.15 9.95 -144.45 -1.44 -9.59 16 5 C 0.07 1.22 5.41 71.98 0.39 1.61 16 6 C 0.08 1.74 3.05 30.56 0.09 1.83 16 7 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 8 C 0.08 1.73 5.94 86.22 0.51 2.24 16 9 N -1.00 -24.17 3.28 -512.36 -1.68 -25.85 16 10 S 2.62 83.87 5.47 -56.49 -0.31 83.57 16 11 O -0.98 -36.35 16.62 -127.65 -2.12 -38.47 16 12 O -0.98 -35.99 16.61 -127.65 -2.12 -38.11 16 13 C -0.58 -20.27 6.12 71.98 0.44 -19.83 16 14 C -0.02 -0.80 4.05 29.84 0.12 -0.68 16 15 C -0.53 -29.45 9.66 25.60 0.25 -29.20 16 16 H 0.05 2.95 7.99 -2.91 -0.02 2.93 16 17 C 0.01 0.74 5.47 84.66 0.46 1.21 16 18 N -0.94 -57.34 13.96 21.45 0.30 -57.04 16 19 Si 0.93 43.43 27.47 68.60 1.88 45.32 16 20 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 21 H -0.25 -11.11 6.53 99.48 0.65 -10.46 16 22 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 23 C 0.07 1.47 6.67 86.35 0.58 2.05 16 24 C 0.05 0.96 6.98 72.08 0.50 1.46 16 25 O -0.38 -8.42 10.35 -144.45 -1.50 -9.91 16 26 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.05 0.72 7.87 -2.38 -0.02 0.70 16 29 H 0.07 0.84 7.79 -2.39 -0.02 0.82 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.09 1.14 8.08 -2.39 -0.02 1.13 16 34 H 0.07 1.06 7.87 -2.39 -0.02 1.04 16 35 H 0.11 2.19 6.87 -2.39 -0.02 2.17 16 36 H 0.10 1.62 8.13 -2.39 -0.02 1.60 16 37 H 0.14 4.38 8.14 -2.39 -0.02 4.37 16 38 H 0.14 4.40 8.14 -2.39 -0.02 4.38 16 39 H 0.03 1.47 7.19 -2.39 -0.02 1.45 16 40 H 0.03 1.42 7.58 -2.39 -0.02 1.41 16 41 H 0.27 15.34 8.31 -92.70 -0.77 14.57 16 42 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.10 2.13 6.88 -2.38 -0.02 2.11 16 44 H 0.13 1.77 8.14 -2.38 -0.02 1.75 16 45 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -74.89 374.36 -1.26 -76.16 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 0.89 Total: 14.74 kcal Atomic # 6 Polarization: -45.63 SS G_CDS: 4.82 Total: -40.81 kcal Atomic # 7 Polarization: -81.51 SS G_CDS: -1.38 Total: -82.89 kcal Atomic # 8 Polarization: -88.91 SS G_CDS: -7.17 Total: -96.09 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 1.88 Total: 45.32 kcal Atomic # 16 Polarization: 83.87 SS G_CDS: -0.31 Total: 83.57 kcal Total: -74.89 -1.26 -76.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000372213130.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.849 kcal (2) G-P(sol) polarization free energy of solvation -74.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds