Wall clock time and date at job start Fri Apr 10 2020 18:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 114.00027 * 2 1 4 4 H 1.09002 * 109.47146 * 34.54931 * 3 2 1 5 5 C 1.52999 * 109.47249 * 274.54420 * 3 2 1 6 6 C 1.53001 * 109.46993 * 175.40301 * 5 3 2 7 7 C 1.53000 * 109.47069 * 173.95493 * 6 5 3 8 8 C 1.53005 * 109.46965 * 293.95136 * 6 5 3 9 9 C 1.53003 * 109.47226 * 154.54565 * 3 2 1 10 10 S 1.81407 * 109.46791 * 300.00145 * 9 3 2 11 11 O 1.42103 * 110.54373 * 68.37378 * 10 9 3 12 12 O 1.42098 * 110.54190 * 291.62023 * 10 9 3 13 13 N 1.65604 * 104.44769 * 179.97438 * 10 9 3 14 14 C 1.47576 * 134.49385 * 90.00283 * 13 10 9 15 15 C 1.53941 * 86.11716 * 155.35633 * 14 13 10 16 16 O 1.42901 * 113.73916 * 269.14614 * 15 14 13 17 17 C 1.50705 * 113.74225 * 137.95305 * 15 14 13 18 18 H 1.07999 * 119.99750 * 1.92023 * 17 15 14 19 19 C 1.37873 * 120.00079 * 181.92182 * 17 15 14 20 20 N 1.31514 * 119.99863 * 0.02562 * 19 17 15 21 21 Si 1.86804 * 120.00024 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47368 * 270.00095 * 21 19 17 23 23 H 1.48505 * 109.46979 * 30.00280 * 21 19 17 24 24 H 1.48506 * 109.46754 * 150.00049 * 21 19 17 25 25 C 1.47816 * 134.45538 * 269.86667 * 13 10 9 26 26 H 1.08998 * 109.47295 * 184.98819 * 1 2 3 27 27 H 1.09000 * 109.47102 * 304.99168 * 1 2 3 28 28 H 1.09003 * 109.46902 * 64.98710 * 1 2 3 29 29 H 1.09000 * 109.46805 * 295.39830 * 5 3 2 30 30 H 1.08995 * 109.46962 * 55.39981 * 5 3 2 31 31 H 1.08993 * 109.47635 * 53.95320 * 6 5 3 32 32 H 1.08999 * 109.47199 * 59.99880 * 7 6 5 33 33 H 1.08997 * 109.47323 * 179.97438 * 7 6 5 34 34 H 1.09000 * 109.46992 * 300.00179 * 7 6 5 35 35 H 1.08997 * 109.46822 * 56.01315 * 8 6 5 36 36 H 1.09001 * 109.46971 * 176.01535 * 8 6 5 37 37 H 1.08997 * 109.47292 * 296.01236 * 8 6 5 38 38 H 1.08995 * 109.47361 * 180.02562 * 9 3 2 39 39 H 1.09000 * 109.47317 * 59.99617 * 9 3 2 40 40 H 1.08997 * 113.77042 * 41.04942 * 14 13 10 41 41 H 1.09005 * 113.76892 * 269.65541 * 14 13 10 42 42 H 0.96698 * 113.99823 * 178.07505 * 16 15 14 43 43 H 0.97001 * 119.99981 * 180.02562 * 20 19 17 44 44 H 1.08991 * 113.77008 * 90.37926 * 25 13 10 45 45 H 1.09003 * 113.83047 * 318.91828 * 25 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3848 1.9816 0.5828 5 6 2.1133 1.8178 -1.4379 6 6 2.6284 3.2585 -1.4303 7 6 2.8747 3.7197 -2.8681 8 6 1.5882 4.1686 -0.7739 9 6 3.4076 1.2416 0.6200 10 16 3.2854 0.6340 2.3249 11 8 2.8917 -0.7313 2.3407 12 8 2.6386 1.5926 3.1507 13 7 4.8492 0.6139 2.8694 14 6 5.7186 1.5901 3.5543 15 6 6.4969 0.3705 4.0802 16 8 6.0216 -0.1171 5.3366 17 6 7.9934 0.5448 4.0458 18 1 8.4209 1.4759 3.7042 19 6 8.8168 -0.4844 4.4505 20 7 8.2962 -1.6183 4.8660 21 14 10.6718 -0.2685 4.4072 22 1 11.1903 -0.7048 3.0859 23 1 11.0090 1.1615 4.6236 24 1 11.2909 -1.0906 5.4779 25 6 5.9336 -0.3907 2.8665 26 1 -0.3634 -1.0237 0.0894 27 1 -0.3633 0.5893 0.8419 28 1 -0.3633 0.4345 -0.9313 29 1 2.8035 1.1882 -1.9994 30 1 1.1296 1.7862 -1.9063 31 1 3.5609 3.3080 -0.8681 32 1 1.9422 3.6703 -3.4303 33 1 3.2413 4.7462 -2.8627 34 1 3.6157 3.0714 -3.3358 35 1 1.3604 3.7981 0.2256 36 1 1.9841 5.1818 -0.7044 37 1 0.6792 4.1742 -1.3753 38 1 3.8508 2.2374 0.6204 39 1 4.0331 0.5653 0.0373 40 1 5.2120 2.1579 4.3346 41 1 6.2940 2.2187 2.8745 42 1 6.4888 -0.9011 5.6563 43 1 8.8755 -2.3423 5.1511 44 1 6.5721 -0.3453 1.9844 45 1 5.5981 -1.4015 3.0989 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420685832.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:43 Heat of formation + Delta-G solvation = -143.240608 kcal Electronic energy + Delta-G solvation = -26708.472353 eV Core-core repulsion = 22854.496060 eV Total energy + Delta-G solvation = -3853.976294 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.09826 -38.40086 -36.54348 -36.27782 -35.37107 -33.84378 -32.14571 -31.92759 -27.79621 -27.47503 -27.29722 -26.64928 -25.24748 -24.59558 -22.36699 -20.06569 -19.52397 -18.21225 -17.47164 -17.09681 -16.90400 -16.40471 -15.62803 -15.43610 -15.02178 -14.99921 -14.79953 -14.20502 -14.01900 -13.69391 -13.60890 -13.28470 -13.04784 -12.89143 -12.65799 -12.55459 -12.28808 -12.09708 -11.83670 -11.58156 -11.56303 -11.51499 -11.45924 -11.38293 -11.26632 -11.08462 -10.85540 -10.78547 -10.74425 -10.50006 -10.49413 -10.21259 -9.73020 -9.25423 -8.72177 -8.50923 -7.99004 -6.32081 -4.43057 0.68393 3.15057 3.17553 3.26148 3.28929 3.42775 4.19070 4.22183 4.38564 4.51123 4.53374 4.67013 4.75713 4.83509 4.93424 5.07336 5.13841 5.16508 5.22250 5.34263 5.42194 5.42969 5.47495 5.56660 5.58125 5.65230 5.68441 5.75607 5.91624 6.03021 6.05396 6.11142 6.11503 6.35007 6.42870 6.72515 6.85372 6.91795 7.05159 7.55805 7.70324 7.90317 8.59678 9.27545 9.53733 10.74205 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018062 B = 0.003586 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.881932 B = 7807.305642 C = 8563.126878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.378 6.378 3 C 0.098 3.902 4 H 0.075 0.925 5 C -0.128 4.128 6 C -0.102 4.102 7 C -0.146 4.146 8 C -0.156 4.156 9 C -0.646 4.646 10 S 2.621 3.379 11 O -0.942 6.942 12 O -0.966 6.966 13 N -1.028 6.028 14 C 0.127 3.873 15 C 0.245 3.755 16 O -0.572 6.572 17 C -0.538 4.538 18 H 0.071 0.929 19 C 0.072 3.928 20 N -0.896 5.896 21 Si 0.906 3.094 22 H -0.278 1.278 23 H -0.272 1.272 24 H -0.284 1.284 25 C 0.104 3.896 26 H 0.093 0.907 27 H 0.045 0.955 28 H 0.044 0.956 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.391 0.609 43 H 0.273 0.727 44 H 0.077 0.923 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.472 7.638 -13.399 18.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.297 6.297 3 C 0.039 3.961 4 H 0.093 0.907 5 C -0.167 4.167 6 C -0.120 4.120 7 C -0.203 4.203 8 C -0.213 4.213 9 C -0.772 4.772 10 S 2.715 3.285 11 O -0.933 6.933 12 O -0.956 6.956 13 N -0.868 5.868 14 C 0.002 3.998 15 C 0.201 3.799 16 O -0.383 6.383 17 C -0.577 4.577 18 H 0.089 0.911 19 C -0.131 4.131 20 N -0.535 5.535 21 Si 0.734 3.266 22 H -0.204 1.204 23 H -0.196 1.196 24 H -0.210 1.210 25 C -0.021 4.021 26 H 0.111 0.889 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.158 0.842 39 H 0.156 0.844 40 H 0.092 0.908 41 H 0.100 0.900 42 H 0.246 0.754 43 H 0.083 0.917 44 H 0.095 0.905 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.736 7.536 -12.999 19.065 hybrid contribution 1.511 0.010 -0.850 1.734 sum -10.224 7.545 -13.849 18.795 Atomic orbital electron populations 1.22898 0.80527 1.03541 1.00098 1.88068 1.20220 1.26392 1.95034 1.21795 0.91529 0.85493 0.97323 0.90733 1.22074 1.02333 0.96264 0.95997 1.21192 0.99548 0.94103 0.97199 1.21821 1.01579 1.01185 0.95702 1.21977 0.98871 0.99655 1.00839 1.31016 1.03742 1.13935 1.28488 1.04704 0.73132 0.74694 0.75946 1.93559 1.80621 1.32666 1.86411 1.93533 1.73804 1.64586 1.63706 1.60300 1.28065 1.26791 1.71675 1.23057 0.89318 0.93600 0.93817 1.19847 0.90569 0.88012 0.81441 1.86052 1.64065 1.51332 1.36886 1.21565 0.90216 1.00948 1.44943 0.91089 1.25083 0.99850 0.94612 0.93579 1.69420 1.36269 1.04408 1.43447 0.86363 0.83959 0.78425 0.77889 1.20417 1.19620 1.20964 1.23881 0.83941 0.92864 1.01461 0.88883 0.93654 0.93752 0.90565 0.91221 0.90487 0.92771 0.92512 0.92543 0.92266 0.92280 0.92586 0.84234 0.84381 0.90767 0.90006 0.75397 0.91694 0.90523 0.90902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.84 101.05 1.09 1.37 16 2 O -0.38 -5.41 9.40 -41.98 -0.39 -5.80 16 3 C 0.10 1.23 2.11 -26.73 -0.06 1.17 16 4 H 0.07 0.88 5.96 -51.93 -0.31 0.57 16 5 C -0.13 -1.27 4.43 -26.73 -0.12 -1.39 16 6 C -0.10 -0.91 2.79 -90.62 -0.25 -1.16 16 7 C -0.15 -1.11 9.19 37.16 0.34 -0.77 16 8 C -0.16 -1.32 9.06 37.16 0.34 -0.99 16 9 C -0.65 -8.77 5.66 37.16 0.21 -8.56 16 10 S 2.62 49.51 5.73 -107.50 -0.62 48.89 16 11 O -0.94 -20.83 17.36 -61.89 -1.07 -21.90 16 12 O -0.97 -20.23 18.02 -57.54 -1.04 -21.27 16 13 N -1.03 -21.02 4.00 -118.54 -0.47 -21.49 16 14 C 0.13 2.62 8.31 -2.97 -0.02 2.60 16 15 C 0.25 5.94 1.40 -90.85 -0.13 5.81 16 16 O -0.57 -15.11 13.48 -35.23 -0.48 -15.59 16 17 C -0.54 -13.39 8.61 -34.44 -0.30 -13.69 16 18 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 19 C 0.07 1.79 5.39 -17.82 -0.10 1.69 16 20 N -0.90 -23.05 11.20 55.43 0.62 -22.43 16 21 Si 0.91 19.41 29.54 -169.99 -5.02 14.39 16 22 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 23 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 24 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 25 C 0.10 2.31 8.32 -2.84 -0.02 2.29 16 26 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.04 0.46 7.97 -51.93 -0.41 0.04 16 28 H 0.04 0.37 7.56 -51.93 -0.39 -0.03 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.61 7.53 -51.93 -0.39 0.22 16 31 H 0.08 0.71 6.29 -51.93 -0.33 0.39 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.54 6.34 -51.93 -0.33 0.21 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.14 1.56 6.43 -51.93 -0.33 1.23 16 39 H 0.14 1.75 8.14 -51.92 -0.42 1.32 16 40 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 41 H 0.08 1.43 8.09 -51.93 -0.42 1.01 16 42 H 0.39 10.43 6.60 45.56 0.30 10.73 16 43 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 44 H 0.08 1.55 8.09 -51.93 -0.42 1.13 16 45 H 0.07 1.72 8.14 -51.93 -0.42 1.30 16 LS Contribution 374.54 15.07 5.64 5.64 Total: -1.00 -31.48 374.54 -8.65 -40.13 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -6.81 Total: 11.05 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: 0.99 Total: -11.62 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: 0.15 Total: -43.93 kcal Atomic # 8 Polarization: -61.58 SS G_CDS: -2.98 Total: -64.56 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.02 Total: 14.39 kcal Atomic # 16 Polarization: 49.51 SS G_CDS: -0.62 Total: 48.89 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.48 -8.65 -40.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420685832.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.109 kcal (2) G-P(sol) polarization free energy of solvation -31.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds