Wall clock time and date at job start Fri Apr 10 2020 18:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.51302 * 2 1 4 4 C 1.53303 * 109.51461 * 239.84822 * 2 1 3 5 5 N 1.47152 * 108.38576 * 187.77126 * 4 2 1 6 6 S 1.65601 * 120.98213 * 230.55459 * 5 4 2 7 7 O 1.42102 * 104.27466 * 26.05327 * 6 5 4 8 8 O 1.42097 * 104.27599 * 153.90623 * 6 5 4 9 9 C 1.81395 * 104.44930 * 269.98138 * 6 5 4 10 10 C 1.52998 * 109.47023 * 180.02562 * 9 6 5 11 11 C 1.53000 * 109.47367 * 180.02562 * 10 9 6 12 12 C 1.50701 * 109.47589 * 179.97438 * 11 10 9 13 13 H 1.07998 * 119.99618 * 0.02562 * 12 11 10 14 14 C 1.37870 * 120.00295 * 179.97438 * 12 11 10 15 15 N 1.31522 * 120.00180 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00097 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47174 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47331 * 120.00232 * 16 14 12 19 19 H 1.48504 * 109.47296 * 240.00217 * 16 14 12 20 20 C 1.47152 * 118.03315 * 50.53536 * 5 4 2 21 21 C 1.53293 * 108.38532 * 309.46224 * 20 5 4 22 22 H 1.09001 * 109.55489 * 292.35225 * 21 20 5 23 23 C 1.53000 * 109.51213 * 172.22781 * 21 20 5 24 24 O 1.42894 * 109.47231 * 175.25475 * 23 21 20 25 25 O 1.42958 * 109.51526 * 120.10029 * 2 1 3 26 26 H 1.09002 * 109.47153 * 299.89748 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.89939 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.89920 * 1 2 3 29 29 H 1.09000 * 109.47123 * 59.99812 * 3 2 1 30 30 H 1.08997 * 109.47108 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46654 * 300.00259 * 3 2 1 32 32 H 1.08997 * 109.67556 * 307.49879 * 4 2 1 33 33 H 1.09003 * 109.67619 * 68.04945 * 4 2 1 34 34 H 1.08999 * 109.47386 * 299.99701 * 9 6 5 35 35 H 1.09000 * 109.47574 * 59.99809 * 9 6 5 36 36 H 1.08999 * 109.47099 * 299.99653 * 10 9 6 37 37 H 1.08999 * 109.47644 * 59.99765 * 10 9 6 38 38 H 1.09005 * 109.46770 * 300.00232 * 11 10 9 39 39 H 1.09000 * 109.47510 * 59.99500 * 11 10 9 40 40 H 0.96996 * 119.99985 * 180.02562 * 15 14 12 41 41 H 1.09000 * 109.67557 * 189.73735 * 20 5 4 42 42 H 1.08998 * 109.68308 * 69.18817 * 20 5 4 43 43 H 1.09005 * 109.46905 * 295.25526 * 23 21 20 44 44 H 1.08996 * 109.47225 * 55.24995 * 23 21 20 45 45 H 0.96708 * 114.00172 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4422 0.0000 4 6 2.0421 -0.7258 -1.2495 5 7 3.5012 -0.8767 -1.1333 6 16 4.5065 -0.4191 -2.3672 7 8 3.7777 0.5859 -3.0585 8 8 5.7374 -0.1195 -1.7235 9 6 4.6699 -1.9063 -3.3929 10 6 5.5871 -1.6083 -4.5806 11 6 5.7245 -2.8624 -5.4462 12 6 6.6274 -2.5687 -6.6165 13 1 7.0604 -1.5860 -6.7312 14 6 6.9016 -3.5549 -7.5402 15 7 6.3748 -4.7518 -7.4003 16 14 8.0214 -3.1911 -8.9903 17 1 8.4817 -1.7810 -8.9188 18 1 9.1967 -4.0977 -8.9479 19 1 7.2765 -3.4054 -10.2570 20 6 4.0407 -1.4457 0.1120 21 6 3.4313 -0.6848 1.2950 22 1 3.8029 0.3399 1.3002 23 6 3.8213 -1.3764 2.6029 24 8 3.3466 -0.6063 3.7089 25 8 2.0075 -0.6758 1.1658 26 1 -0.3633 0.5122 0.8909 27 1 -0.3633 -1.0277 -0.0018 28 1 -0.3634 0.5154 -0.8891 29 1 1.6781 1.9563 0.8900 30 1 3.1310 1.4414 -0.0005 31 1 1.6780 1.9562 -0.8900 32 1 1.5758 -1.7085 -1.3200 33 1 1.8031 -0.1408 -2.1376 34 1 5.0975 -2.7131 -2.7977 35 1 3.6875 -2.2056 -3.7581 36 1 5.1599 -0.8014 -5.1761 37 1 6.5695 -1.3093 -4.2151 38 1 6.1514 -3.6697 -4.8510 39 1 4.7420 -3.1610 -5.8118 40 1 6.5680 -5.4457 -8.0499 41 1 5.1252 -1.3375 0.1253 42 1 3.7757 -2.5009 0.1784 43 1 3.3760 -2.3709 2.6348 44 1 4.9064 -1.4623 2.6589 45 1 3.5589 -0.9860 4.5726 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420739401.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:50 Heat of formation + Delta-G solvation = -175.647962 kcal Electronic energy + Delta-G solvation = -26486.810842 eV Core-core repulsion = 22631.429260 eV Total energy + Delta-G solvation = -3855.381582 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.24489 -37.19074 -36.95667 -35.86865 -35.02304 -34.71035 -33.98661 -32.22244 -30.20974 -27.86477 -27.61001 -26.86650 -24.92315 -23.67022 -22.14908 -20.63009 -19.93087 -18.90244 -17.79478 -17.71778 -17.10178 -16.65789 -16.20091 -15.86342 -15.32181 -15.10633 -14.98191 -14.78381 -14.50495 -14.20359 -14.11031 -13.56773 -12.99910 -12.66317 -12.62019 -12.52610 -12.38180 -12.30608 -12.13431 -12.02847 -11.97744 -11.84338 -11.66311 -11.53350 -11.35289 -11.29241 -10.96258 -10.88118 -10.58433 -10.45208 -10.39803 -10.20056 -10.00185 -9.49812 -9.21331 -8.85047 -8.44153 -6.08768 -4.12002 0.31375 2.56522 3.27275 3.32180 3.34918 3.39765 3.76214 3.91146 4.21942 4.36112 4.40624 4.50242 4.64080 4.72102 4.82998 4.90034 4.99047 5.07469 5.11326 5.12460 5.20202 5.22058 5.27790 5.39562 5.44767 5.50370 5.54618 5.66138 5.73441 5.76740 5.83465 5.99848 6.04857 6.17667 6.29948 6.39297 6.82158 7.01713 7.31165 7.53281 7.62566 7.89157 8.29284 8.94434 9.53009 11.02476 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.024043 B = 0.002833 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.286699 B = 9880.761036 C =10214.735526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.104 3.896 3 C -0.178 4.178 4 C 0.093 3.907 5 N -1.005 6.005 6 S 2.594 3.406 7 O -0.955 6.955 8 O -0.958 6.958 9 C -0.606 4.606 10 C -0.106 4.106 11 C 0.031 3.969 12 C -0.526 4.526 13 H 0.059 0.941 14 C 0.057 3.943 15 N -0.895 5.895 16 Si 0.894 3.106 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.283 1.283 20 C 0.090 3.910 21 C 0.079 3.921 22 H 0.076 0.924 23 C 0.085 3.915 24 O -0.565 6.565 25 O -0.358 6.358 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.105 0.895 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.021 0.979 39 H 0.021 0.979 40 H 0.261 0.739 41 H 0.106 0.894 42 H 0.079 0.921 43 H 0.057 0.943 44 H 0.065 0.935 45 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.372 6.159 20.667 23.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.063 3.937 3 C -0.235 4.235 4 C -0.033 4.033 5 N -0.841 5.841 6 S 2.693 3.307 7 O -0.945 6.945 8 O -0.949 6.949 9 C -0.738 4.738 10 C -0.146 4.146 11 C -0.008 4.008 12 C -0.564 4.564 13 H 0.077 0.923 14 C -0.144 4.144 15 N -0.534 5.534 16 Si 0.722 3.278 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.036 4.036 21 C 0.019 3.981 22 H 0.094 0.906 23 C 0.007 3.993 24 O -0.370 6.370 25 O -0.278 6.278 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.124 0.876 34 H 0.146 0.854 35 H 0.146 0.854 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.039 0.961 39 H 0.039 0.961 40 H 0.071 0.929 41 H 0.124 0.876 42 H 0.097 0.903 43 H 0.075 0.925 44 H 0.083 0.917 45 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -10.347 7.168 20.141 23.750 hybrid contribution 0.860 -1.004 -0.718 1.504 sum -9.487 6.164 19.423 22.477 Atomic orbital electron populations 1.21729 0.91522 1.03125 1.03005 1.21794 0.95087 0.91639 0.85194 1.22398 1.02075 0.95966 1.03107 1.22209 0.79423 1.01773 0.99874 1.57944 1.16865 1.80163 1.29119 1.05589 0.73410 0.77525 0.74194 1.93558 1.72011 1.54753 1.74224 1.93554 1.44184 1.83547 1.73574 1.30580 1.10318 1.19838 1.13098 1.21517 0.96411 1.03291 0.93342 1.19067 0.97526 0.90614 0.93553 1.21285 1.29002 0.97743 1.08411 0.92307 1.25024 0.96158 0.95030 0.98183 1.69968 1.44348 1.02772 1.36323 0.86495 0.80472 0.78527 0.82310 1.19585 1.20920 1.20907 1.21986 1.00062 0.98072 0.83449 1.22380 0.82791 1.00123 0.92794 0.90643 1.22101 0.97750 0.94205 0.85252 1.86534 1.81781 1.52178 1.16520 1.88014 1.19784 1.76820 1.43137 0.91379 0.91540 0.90610 0.91542 0.92226 0.90845 0.90398 0.87638 0.85411 0.85362 0.91567 0.91589 0.96111 0.96094 0.92922 0.87560 0.90260 0.92464 0.91671 0.77374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 8.85 37.16 0.33 -0.78 16 2 C 0.10 1.08 1.11 -90.46 -0.10 0.98 16 3 C -0.18 -1.94 8.09 37.16 0.30 -1.64 16 4 C 0.09 0.98 5.34 -3.53 -0.02 0.96 16 5 N -1.00 -11.83 2.79 -113.06 -0.32 -12.15 16 6 S 2.59 38.37 5.47 -107.50 -0.59 37.78 16 7 O -0.96 -16.29 16.62 -57.54 -0.96 -17.24 16 8 O -0.96 -16.41 16.62 -57.54 -0.96 -17.36 16 9 C -0.61 -9.29 6.18 37.16 0.23 -9.06 16 10 C -0.11 -2.14 5.16 -26.73 -0.14 -2.28 16 11 C 0.03 0.77 4.97 -27.88 -0.14 0.64 16 12 C -0.53 -14.76 9.11 -34.44 -0.31 -15.07 16 13 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.89 -26.44 13.29 55.43 0.74 -25.71 16 16 Si 0.89 21.48 29.54 -169.99 -5.02 16.45 16 17 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 C 0.09 0.92 5.96 -3.53 -0.02 0.90 16 21 C 0.08 0.83 2.67 -26.58 -0.07 0.76 16 22 H 0.08 0.89 6.26 -51.93 -0.32 0.56 16 23 C 0.09 0.70 6.71 37.16 0.25 0.95 16 24 O -0.57 -5.09 13.63 -39.97 -0.54 -5.64 16 25 O -0.36 -4.15 9.83 -39.97 -0.39 -4.54 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.73 6.12 -51.93 -0.32 0.41 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.11 1.11 6.88 -51.93 -0.36 0.75 16 34 H 0.13 1.74 8.14 -51.92 -0.42 1.32 16 35 H 0.13 1.76 8.14 -51.92 -0.42 1.34 16 36 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 37 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 41 H 0.11 1.05 6.88 -51.93 -0.36 0.69 16 42 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.38 1.52 9.12 45.56 0.42 1.94 16 LS Contribution 372.14 15.07 5.61 5.61 Total: -1.00 -36.01 372.14 -9.04 -45.06 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -6.82 Total: -0.14 kcal Atomic # 6 Polarization: -22.32 SS G_CDS: 0.21 Total: -22.11 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: 0.42 Total: -37.85 kcal Atomic # 8 Polarization: -41.94 SS G_CDS: -2.85 Total: -44.79 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 38.37 SS G_CDS: -0.59 Total: 37.78 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.01 -9.04 -45.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420739401.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.591 kcal (2) G-P(sol) polarization free energy of solvation -36.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds