Wall clock time and date at job start Fri Apr 10 2020 18:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.51302 * 2 1 4 4 C 1.53303 * 109.51461 * 239.84822 * 2 1 3 5 5 N 1.47152 * 108.38576 * 187.77126 * 4 2 1 6 6 S 1.65601 * 120.98213 * 230.55459 * 5 4 2 7 7 O 1.42102 * 104.27466 * 26.05327 * 6 5 4 8 8 O 1.42097 * 104.27599 * 153.90623 * 6 5 4 9 9 C 1.81395 * 104.44930 * 269.98138 * 6 5 4 10 10 C 1.52998 * 109.47023 * 180.02562 * 9 6 5 11 11 C 1.53000 * 109.47367 * 180.02562 * 10 9 6 12 12 C 1.50701 * 109.47589 * 179.97438 * 11 10 9 13 13 H 1.07998 * 119.99618 * 0.02562 * 12 11 10 14 14 C 1.37870 * 120.00295 * 179.97438 * 12 11 10 15 15 N 1.31522 * 120.00180 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00097 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47174 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47331 * 120.00232 * 16 14 12 19 19 H 1.48504 * 109.47296 * 240.00217 * 16 14 12 20 20 C 1.47152 * 118.03315 * 50.53536 * 5 4 2 21 21 C 1.53293 * 108.38532 * 309.46224 * 20 5 4 22 22 H 1.09001 * 109.55489 * 292.35225 * 21 20 5 23 23 C 1.53000 * 109.51213 * 172.22781 * 21 20 5 24 24 O 1.42894 * 109.47231 * 175.25475 * 23 21 20 25 25 O 1.42958 * 109.51526 * 120.10029 * 2 1 3 26 26 H 1.09002 * 109.47153 * 299.89748 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.89939 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.89920 * 1 2 3 29 29 H 1.09000 * 109.47123 * 59.99812 * 3 2 1 30 30 H 1.08997 * 109.47108 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46654 * 300.00259 * 3 2 1 32 32 H 1.08997 * 109.67556 * 307.49879 * 4 2 1 33 33 H 1.09003 * 109.67619 * 68.04945 * 4 2 1 34 34 H 1.08999 * 109.47386 * 299.99701 * 9 6 5 35 35 H 1.09000 * 109.47574 * 59.99809 * 9 6 5 36 36 H 1.08999 * 109.47099 * 299.99653 * 10 9 6 37 37 H 1.08999 * 109.47644 * 59.99765 * 10 9 6 38 38 H 1.09005 * 109.46770 * 300.00232 * 11 10 9 39 39 H 1.09000 * 109.47510 * 59.99500 * 11 10 9 40 40 H 0.96996 * 119.99985 * 180.02562 * 15 14 12 41 41 H 1.09000 * 109.67557 * 189.73735 * 20 5 4 42 42 H 1.08998 * 109.68308 * 69.18817 * 20 5 4 43 43 H 1.09005 * 109.46905 * 295.25526 * 23 21 20 44 44 H 1.08996 * 109.47225 * 55.24995 * 23 21 20 45 45 H 0.96708 * 114.00172 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4422 0.0000 4 6 2.0421 -0.7258 -1.2495 5 7 3.5012 -0.8767 -1.1333 6 16 4.5065 -0.4191 -2.3672 7 8 3.7777 0.5859 -3.0585 8 8 5.7374 -0.1195 -1.7235 9 6 4.6699 -1.9063 -3.3929 10 6 5.5871 -1.6083 -4.5806 11 6 5.7245 -2.8624 -5.4462 12 6 6.6274 -2.5687 -6.6165 13 1 7.0604 -1.5860 -6.7312 14 6 6.9016 -3.5549 -7.5402 15 7 6.3748 -4.7518 -7.4003 16 14 8.0214 -3.1911 -8.9903 17 1 8.4817 -1.7810 -8.9188 18 1 9.1967 -4.0977 -8.9479 19 1 7.2765 -3.4054 -10.2570 20 6 4.0407 -1.4457 0.1120 21 6 3.4313 -0.6848 1.2950 22 1 3.8029 0.3399 1.3002 23 6 3.8213 -1.3764 2.6029 24 8 3.3466 -0.6063 3.7089 25 8 2.0075 -0.6758 1.1658 26 1 -0.3633 0.5122 0.8909 27 1 -0.3633 -1.0277 -0.0018 28 1 -0.3634 0.5154 -0.8891 29 1 1.6781 1.9563 0.8900 30 1 3.1310 1.4414 -0.0005 31 1 1.6780 1.9562 -0.8900 32 1 1.5758 -1.7085 -1.3200 33 1 1.8031 -0.1408 -2.1376 34 1 5.0975 -2.7131 -2.7977 35 1 3.6875 -2.2056 -3.7581 36 1 5.1599 -0.8014 -5.1761 37 1 6.5695 -1.3093 -4.2151 38 1 6.1514 -3.6697 -4.8510 39 1 4.7420 -3.1610 -5.8118 40 1 6.5680 -5.4457 -8.0499 41 1 5.1252 -1.3375 0.1253 42 1 3.7757 -2.5009 0.1784 43 1 3.3760 -2.3709 2.6348 44 1 4.9064 -1.4623 2.6589 45 1 3.5589 -0.9860 4.5726 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000420739401.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:49 Heat of formation + Delta-G solvation = -203.982854 kcal Electronic energy + Delta-G solvation = -26488.039535 eV Core-core repulsion = 22631.429260 eV Total energy + Delta-G solvation = -3856.610275 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.05051 -38.37348 -37.68967 -37.14650 -36.50176 -35.91285 -34.74405 -34.18809 -30.99182 -29.68405 -28.37445 -27.63539 -25.93243 -25.39125 -22.87605 -22.36902 -20.80043 -19.95926 -18.91841 -18.59435 -18.39810 -17.90735 -17.26358 -17.23472 -16.51301 -16.31859 -15.98680 -15.88411 -15.65013 -15.44784 -14.84914 -14.52327 -14.33955 -14.09170 -13.73112 -13.62804 -13.54133 -13.37047 -13.26007 -13.20034 -13.05685 -12.97967 -12.79250 -12.78890 -12.67170 -12.63409 -12.31521 -12.17843 -12.07091 -11.78964 -11.42365 -11.32877 -11.25716 -11.04729 -10.86426 -10.59531 -9.79773 -8.24333 -6.35404 -0.88659 1.38834 1.39711 1.50778 1.52905 2.38644 2.58480 2.71721 2.96768 3.09339 3.26836 3.45913 3.69452 3.79898 3.83522 3.89364 3.97715 4.11460 4.19188 4.29105 4.35016 4.38285 4.50970 4.58177 4.60115 4.64720 4.67638 4.75896 4.84343 4.90465 4.92235 4.98005 5.01601 5.04753 5.21154 5.29316 5.42039 5.43356 5.60217 5.77549 6.17718 6.22915 6.80284 6.93763 7.34181 8.87338 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.024043 B = 0.002833 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.286699 B = 9880.761036 C =10214.735526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.099 3.901 3 C -0.179 4.179 4 C 0.086 3.914 5 N -0.999 5.999 6 S 2.619 3.381 7 O -0.979 6.979 8 O -0.983 6.983 9 C -0.606 4.606 10 C -0.107 4.107 11 C 0.032 3.968 12 C -0.552 4.552 13 H 0.060 0.940 14 C 0.003 3.997 15 N -0.929 5.929 16 Si 0.963 3.037 17 H -0.264 1.264 18 H -0.276 1.276 19 H -0.276 1.276 20 C 0.085 3.915 21 C 0.073 3.927 22 H 0.056 0.944 23 C 0.086 3.914 24 O -0.589 6.589 25 O -0.368 6.368 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.068 0.932 30 H 0.041 0.959 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.004 0.996 39 H 0.003 0.997 40 H 0.265 0.735 41 H 0.108 0.892 42 H 0.105 0.895 43 H 0.071 0.929 44 H 0.085 0.915 45 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.760 5.906 21.241 24.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.058 3.942 3 C -0.236 4.236 4 C -0.039 4.039 5 N -0.837 5.837 6 S 2.717 3.283 7 O -0.969 6.969 8 O -0.973 6.973 9 C -0.737 4.737 10 C -0.146 4.146 11 C -0.007 4.007 12 C -0.590 4.590 13 H 0.078 0.922 14 C -0.195 4.195 15 N -0.569 5.569 16 Si 0.787 3.213 17 H -0.188 1.188 18 H -0.202 1.202 19 H -0.202 1.202 20 C -0.041 4.041 21 C 0.013 3.987 22 H 0.074 0.926 23 C 0.008 3.992 24 O -0.398 6.398 25 O -0.287 6.287 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.108 0.892 29 H 0.087 0.913 30 H 0.060 0.940 31 H 0.095 0.905 32 H 0.118 0.882 33 H 0.123 0.877 34 H 0.164 0.836 35 H 0.164 0.836 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.022 0.978 39 H 0.022 0.978 40 H 0.074 0.926 41 H 0.126 0.874 42 H 0.123 0.877 43 H 0.089 0.911 44 H 0.103 0.897 45 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -10.726 6.914 20.725 24.339 hybrid contribution 0.937 -0.920 -0.806 1.541 sum -9.789 5.994 19.919 22.989 Atomic orbital electron populations 1.21745 0.89732 1.03882 1.03696 1.21942 0.96429 0.90915 0.84883 1.22412 1.00899 0.96895 1.03401 1.22447 0.78428 1.03084 0.99982 1.57651 1.17208 1.80168 1.28672 1.04649 0.72878 0.76762 0.74034 1.93521 1.72455 1.55760 1.75206 1.93517 1.45843 1.83876 1.74080 1.30534 1.10252 1.21176 1.11712 1.21326 0.97855 1.00838 0.94569 1.18958 0.95825 0.92359 0.93517 1.21759 1.29634 0.97954 1.09672 0.92214 1.25929 0.97659 0.94817 1.01121 1.70074 1.45629 1.03703 1.37524 0.85430 0.78492 0.78684 0.78664 1.18810 1.20181 1.20189 1.22218 1.00194 0.99317 0.82323 1.22489 0.82388 0.99494 0.94280 0.92621 1.22156 0.98975 0.94137 0.83950 1.86473 1.82206 1.53181 1.17936 1.88011 1.20325 1.76837 1.43571 0.91407 0.90736 0.89246 0.91269 0.94023 0.90523 0.88225 0.87741 0.83588 0.83643 0.91589 0.91577 0.97786 0.97824 0.92596 0.87430 0.87711 0.91115 0.89727 0.75047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.91 8.85 71.98 0.64 -1.27 16 2 C 0.10 1.93 1.11 -10.69 -0.01 1.91 16 3 C -0.18 -3.82 8.09 71.98 0.58 -3.24 16 4 C 0.09 1.65 5.34 86.36 0.46 2.11 16 5 N -1.00 -22.06 2.79 -511.61 -1.43 -23.49 16 6 S 2.62 75.33 5.47 -56.49 -0.31 75.02 16 7 O -0.98 -32.93 16.62 -127.65 -2.12 -35.05 16 8 O -0.98 -33.20 16.62 -127.65 -2.12 -35.32 16 9 C -0.61 -17.91 6.18 71.98 0.44 -17.47 16 10 C -0.11 -4.30 5.16 30.59 0.16 -4.14 16 11 C 0.03 1.62 4.97 29.85 0.15 1.77 16 12 C -0.55 -31.25 9.11 25.60 0.23 -31.02 16 13 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 14 C 0.00 0.17 5.46 84.65 0.46 0.63 16 15 N -0.93 -55.32 13.29 21.45 0.28 -55.03 16 16 Si 0.96 43.92 29.54 68.60 2.03 45.95 16 17 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 18 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 19 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 20 C 0.08 1.57 5.96 86.35 0.51 2.08 16 21 C 0.07 1.45 2.67 30.69 0.08 1.53 16 22 H 0.06 1.31 6.26 -2.39 -0.01 1.29 16 23 C 0.09 1.24 6.71 71.98 0.48 1.72 16 24 O -0.59 -9.76 13.63 -144.44 -1.97 -11.73 16 25 O -0.37 -7.96 9.83 -144.44 -1.42 -9.38 16 26 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 29 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.04 1.03 6.12 -2.39 -0.01 1.01 16 31 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 32 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.10 2.05 6.88 -2.39 -0.02 2.03 16 34 H 0.15 3.76 8.14 -2.39 -0.02 3.74 16 35 H 0.15 3.78 8.14 -2.39 -0.02 3.76 16 36 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 37 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 38 H 0.00 0.20 8.14 -2.38 -0.02 0.18 16 39 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 40 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 41 H 0.11 1.97 6.88 -2.39 -0.02 1.95 16 42 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 44 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.40 2.53 9.12 -74.05 -0.68 1.86 16 Total: -1.00 -77.07 372.14 -2.56 -79.64 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 0.30 Total: 14.76 kcal Atomic # 6 Polarization: -49.56 SS G_CDS: 4.20 Total: -45.37 kcal Atomic # 7 Polarization: -77.38 SS G_CDS: -1.14 Total: -78.52 kcal Atomic # 8 Polarization: -83.85 SS G_CDS: -7.63 Total: -91.48 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: 75.33 SS G_CDS: -0.31 Total: 75.02 kcal Total: -77.07 -2.56 -79.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420739401.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.345 kcal (2) G-P(sol) polarization free energy of solvation -77.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds