Wall clock time and date at job start Fri Apr 10 2020 18:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47329 * 2 1 4 4 N 1.46505 * 109.47235 * 120.00342 * 2 1 3 5 5 C 1.46497 * 119.99688 * 305.38010 * 4 2 1 6 6 C 1.52996 * 109.47532 * 76.26617 * 5 4 2 7 7 H 1.09005 * 109.46479 * 297.49249 * 6 5 4 8 8 O 1.42898 * 109.47316 * 57.49206 * 6 5 4 9 9 C 1.53001 * 109.47308 * 177.49715 * 6 5 4 10 10 O 1.42893 * 109.47140 * 174.99952 * 9 6 5 11 11 S 1.65606 * 119.99943 * 125.37512 * 4 2 1 12 12 O 1.42098 * 104.27349 * 153.92765 * 11 4 2 13 13 O 1.42097 * 104.27375 * 26.07210 * 11 4 2 14 14 C 1.81400 * 104.44808 * 270.00065 * 11 4 2 15 15 C 1.53002 * 109.46742 * 182.90183 * 14 11 4 16 16 C 1.50701 * 115.54753 * 305.67178 * 15 14 11 17 17 H 1.08006 * 119.99634 * 95.02152 * 16 15 14 18 18 C 1.37875 * 120.00625 * 275.02752 * 16 15 14 19 19 N 1.31520 * 119.99612 * 6.30346 * 18 16 15 20 20 Si 1.86798 * 120.00476 * 186.30991 * 18 16 15 21 21 H 1.48499 * 109.46844 * 269.99688 * 20 18 16 22 22 H 1.48500 * 109.47166 * 29.99334 * 20 18 16 23 23 H 1.48492 * 109.47233 * 149.99778 * 20 18 16 24 24 C 1.52997 * 117.50166 * 91.34666 * 15 14 11 25 25 C 1.52994 * 117.49832 * 160.00937 * 15 14 11 26 26 H 1.09001 * 109.46372 * 309.73087 * 1 2 3 27 27 H 1.08997 * 109.47127 * 69.72545 * 1 2 3 28 28 H 1.08997 * 109.47123 * 189.73540 * 1 2 3 29 29 H 1.09002 * 109.46730 * 240.00032 * 2 1 3 30 30 H 1.09000 * 109.47093 * 184.57721 * 3 2 1 31 31 H 1.08996 * 109.47188 * 304.57498 * 3 2 1 32 32 H 1.08994 * 109.47349 * 64.57958 * 3 2 1 33 33 H 1.09008 * 109.46824 * 196.26674 * 5 4 2 34 34 H 1.09006 * 109.47158 * 316.25919 * 5 4 2 35 35 H 0.96694 * 113.99948 * 65.19074 * 8 6 5 36 36 H 1.09004 * 109.46901 * 294.99574 * 9 6 5 37 37 H 1.09001 * 109.47283 * 54.99354 * 9 6 5 38 38 H 0.96709 * 113.99868 * 179.97438 * 10 9 6 39 39 H 1.08991 * 109.47245 * 62.90166 * 14 11 4 40 40 H 1.08997 * 109.47144 * 302.89403 * 14 11 4 41 41 H 0.96999 * 119.99584 * 355.24004 * 19 18 16 42 42 H 1.08996 * 117.49623 * 215.00162 * 24 15 14 43 43 H 1.08994 * 117.49760 * 0.02562 * 24 15 14 44 44 H 1.09002 * 117.50113 * 359.96749 * 25 15 14 45 45 H 1.09002 * 117.50163 * 144.96843 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 1.5700 -0.2626 2.5235 6 6 0.1445 -0.7624 2.7660 7 1 -0.5273 -0.3135 2.0343 8 8 0.1096 -2.1849 2.6349 9 6 -0.3010 -0.3690 4.1759 10 8 -1.6704 -0.7324 4.3616 11 16 3.0773 -1.9554 1.0477 12 8 3.7861 -1.9652 2.2793 13 8 3.7470 -1.7092 -0.1811 14 6 2.0162 -3.4204 0.9121 15 6 2.8875 -4.6762 0.8410 16 6 3.9370 -4.6787 -0.2405 17 1 4.9456 -4.3654 -0.0148 18 6 3.6096 -5.0808 -1.5180 19 7 2.3577 -5.3433 -1.8242 20 14 4.9439 -5.2530 -2.8139 21 1 5.1084 -3.9623 -3.5295 22 1 6.2246 -5.6229 -2.1595 23 1 4.5595 -6.3106 -3.7827 24 6 3.2292 -5.3745 2.1588 25 6 2.2301 -6.0128 1.1906 26 1 -0.3632 0.6569 0.7904 27 1 -0.3633 0.3561 -0.9640 28 1 -0.3633 -1.0128 0.1738 29 1 1.8933 -0.5138 -0.8900 30 1 3.1270 1.4435 -0.0820 31 1 1.6114 1.9794 -0.8461 32 1 1.7453 1.9320 0.9281 33 1 2.2342 -0.6765 3.2823 34 1 1.5880 0.8258 2.5796 35 1 0.6228 -2.6545 3.3066 36 1 0.3154 -0.8884 4.9098 37 1 -0.1899 0.7076 4.3050 38 1 -2.0207 -0.5124 5.2357 39 1 1.4097 -3.3475 0.0095 40 1 1.3648 -3.4792 1.7840 41 1 1.6751 -5.3211 -1.1354 42 1 4.2132 -5.8356 2.2435 43 1 2.8331 -4.9395 3.0763 44 1 1.1771 -5.9975 1.4717 45 1 2.5564 -6.8939 0.6381 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420766699.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:00 Heat of formation + Delta-G solvation = -144.999833 kcal Electronic energy + Delta-G solvation = -28130.180707 eV Core-core repulsion = 24276.128128 eV Total energy + Delta-G solvation = -3854.052579 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.02728 -37.07904 -36.91338 -36.36486 -35.61053 -35.02059 -31.91431 -31.79465 -29.94900 -28.17333 -27.19245 -25.49690 -24.87692 -21.84622 -21.35741 -20.93538 -19.71291 -18.64763 -17.51101 -17.36079 -16.83488 -16.79831 -16.00445 -15.51168 -15.26459 -14.58111 -14.29593 -14.13418 -13.83182 -13.69175 -13.67456 -13.37603 -13.09269 -12.90372 -12.59335 -12.51524 -12.23020 -11.83912 -11.76267 -11.44491 -11.36749 -11.23533 -11.08712 -10.99480 -10.74758 -10.71292 -10.59003 -10.45879 -10.33121 -10.25954 -10.12322 -10.04140 -9.62360 -8.83208 -8.58333 -8.40929 -8.22334 -6.39729 -4.18790 1.06335 3.23149 3.49680 3.53727 3.67919 3.85268 4.24907 4.53987 4.61800 4.72075 4.75589 4.87180 4.94656 5.02969 5.05161 5.11042 5.17301 5.25609 5.28612 5.30420 5.53916 5.57652 5.63303 5.67433 5.79594 5.84043 5.96428 5.98775 6.14988 6.22431 6.23629 6.35545 6.41446 6.52236 6.57175 6.81605 6.88830 7.09861 7.22058 7.33351 7.55417 8.09709 8.38392 8.83425 9.60905 11.00543 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015654 B = 0.005485 C = 0.004757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.274893 B = 5103.843448 C = 5885.222191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.140 3.860 3 C -0.159 4.159 4 N -0.995 5.995 5 C 0.087 3.913 6 C 0.068 3.932 7 H 0.126 0.874 8 O -0.543 6.543 9 C 0.043 3.957 10 O -0.563 6.563 11 S 2.615 3.385 12 O -0.979 6.979 13 O -0.941 6.941 14 C -0.561 4.561 15 C 0.023 3.977 16 C -0.595 4.595 17 H 0.060 0.940 18 C 0.043 3.957 19 N -0.897 5.897 20 Si 1.065 2.935 21 H -0.282 1.282 22 H -0.286 1.286 23 H -0.284 1.284 24 C -0.192 4.192 25 C -0.164 4.164 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.103 0.897 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.370 0.630 36 H 0.051 0.949 37 H 0.055 0.945 38 H 0.377 0.623 39 H 0.121 0.879 40 H 0.116 0.884 41 H 0.276 0.724 42 H 0.086 0.914 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.904 12.567 10.405 17.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.034 3.966 3 C -0.217 4.217 4 N -0.829 5.829 5 C -0.040 4.040 6 C 0.008 3.992 7 H 0.143 0.857 8 O -0.349 6.349 9 C -0.036 4.036 10 O -0.367 6.367 11 S 2.713 3.287 12 O -0.970 6.970 13 O -0.931 6.931 14 C -0.694 4.694 15 C 0.020 3.980 16 C -0.632 4.632 17 H 0.078 0.922 18 C -0.164 4.164 19 N -0.531 5.531 20 Si 0.892 3.108 21 H -0.208 1.208 22 H -0.212 1.212 23 H -0.210 1.210 24 C -0.230 4.230 25 C -0.203 4.203 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.121 0.879 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.115 0.885 34 H 0.103 0.897 35 H 0.218 0.782 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.223 0.777 39 H 0.139 0.861 40 H 0.134 0.866 41 H 0.087 0.913 42 H 0.105 0.895 43 H 0.091 0.909 44 H 0.089 0.911 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.993 12.291 7.652 15.670 hybrid contribution -0.748 0.237 2.807 2.914 sum -6.740 12.529 10.459 17.657 Atomic orbital electron populations 1.22471 0.95361 1.03002 1.01780 1.20835 0.94182 0.93835 0.87742 1.22116 1.02077 0.95848 1.01696 1.57911 1.65197 1.49664 1.10078 1.21797 0.95069 1.01562 0.85576 1.23038 0.97295 0.82867 0.96046 0.85676 1.86734 1.75010 1.16953 1.56220 1.22925 0.83534 0.99162 0.98016 1.86573 1.25844 1.85863 1.38457 1.04945 0.74893 0.74882 0.73955 1.93450 1.70154 1.86916 1.46466 1.93538 1.70577 1.83473 1.45521 1.30209 1.12910 1.16592 1.09687 1.18598 0.96680 0.87701 0.94997 1.21404 0.95639 1.51171 0.95027 0.92216 1.25754 1.00095 0.92221 0.98345 1.70722 1.00794 1.44658 1.36919 0.83615 0.74509 0.77153 0.75477 1.20774 1.21199 1.20990 1.23017 1.00062 1.06668 0.93218 1.22764 0.95604 0.98651 1.03271 0.92261 0.91740 0.90973 0.87877 0.91995 0.91638 0.92625 0.88471 0.89744 0.78182 0.93082 0.92716 0.77683 0.86083 0.86580 0.91255 0.89509 0.90939 0.91093 0.89462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 7.59 37.16 0.28 -1.71 16 2 C 0.14 1.99 3.13 -67.93 -0.21 1.77 16 3 C -0.16 -1.86 9.30 37.15 0.35 -1.52 16 4 N -0.99 -15.36 2.55 -107.30 -0.27 -15.63 16 5 C 0.09 1.04 5.11 -4.05 -0.02 1.02 16 6 C 0.07 0.77 2.76 -26.73 -0.07 0.69 16 7 H 0.13 1.44 4.28 -51.93 -0.22 1.22 16 8 O -0.54 -7.34 10.49 -40.09 -0.42 -7.77 16 9 C 0.04 0.37 6.64 37.16 0.25 0.62 16 10 O -0.56 -5.55 13.62 -40.09 -0.55 -6.10 16 11 S 2.61 54.43 4.99 -107.50 -0.54 53.89 16 12 O -0.98 -21.47 16.49 -57.54 -0.95 -22.42 16 13 O -0.94 -23.29 15.77 -57.54 -0.91 -24.20 16 14 C -0.56 -11.91 5.66 37.16 0.21 -11.70 16 15 C 0.02 0.55 1.04 -155.66 -0.16 0.39 16 16 C -0.60 -16.71 7.40 -34.44 -0.25 -16.97 16 17 H 0.06 1.74 7.82 -52.48 -0.41 1.33 16 18 C 0.04 1.23 5.39 -17.82 -0.10 1.14 16 19 N -0.90 -26.24 13.57 55.43 0.75 -25.48 16 20 Si 1.06 25.92 29.91 -169.99 -5.08 20.84 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 24 C -0.19 -4.19 9.92 -26.69 -0.26 -4.45 16 25 C -0.16 -3.71 8.69 -26.70 -0.23 -3.95 16 26 H 0.06 0.59 6.19 -51.93 -0.32 0.27 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.97 7.57 -51.93 -0.39 0.58 16 29 H 0.10 1.70 6.99 -51.93 -0.36 1.34 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.55 6.78 -51.93 -0.35 0.20 16 33 H 0.10 1.20 6.73 -51.92 -0.35 0.85 16 34 H 0.08 0.80 6.73 -51.93 -0.35 0.45 16 35 H 0.37 4.23 8.25 45.56 0.38 4.60 16 36 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.38 1.90 9.12 45.56 0.42 2.31 16 39 H 0.12 2.72 7.80 -51.93 -0.40 2.31 16 40 H 0.12 2.09 4.73 -51.93 -0.25 1.85 16 41 H 0.28 7.90 6.14 -40.82 -0.25 7.65 16 42 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 43 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 44 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 45 H 0.09 2.10 8.14 -51.93 -0.42 1.68 16 LS Contribution 363.74 15.07 5.48 5.48 Total: -1.00 -35.95 363.74 -8.19 -44.13 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -5.47 Total: 11.91 kcal Atomic # 6 Polarization: -34.42 SS G_CDS: -0.23 Total: -34.66 kcal Atomic # 7 Polarization: -41.60 SS G_CDS: 0.48 Total: -41.12 kcal Atomic # 8 Polarization: -57.66 SS G_CDS: -2.82 Total: -60.48 kcal Atomic # 14 Polarization: 25.92 SS G_CDS: -5.08 Total: 20.84 kcal Atomic # 16 Polarization: 54.43 SS G_CDS: -0.54 Total: 53.89 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.95 -8.19 -44.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420766699.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.866 kcal (2) G-P(sol) polarization free energy of solvation -35.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds