Wall clock time and date at job start Fri Apr 10 2020 18:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47329 * 2 1 4 4 N 1.46505 * 109.47235 * 120.00342 * 2 1 3 5 5 C 1.46497 * 119.99688 * 305.38010 * 4 2 1 6 6 C 1.52996 * 109.47532 * 76.26617 * 5 4 2 7 7 H 1.09005 * 109.46479 * 297.49249 * 6 5 4 8 8 O 1.42898 * 109.47316 * 57.49206 * 6 5 4 9 9 C 1.53001 * 109.47308 * 177.49715 * 6 5 4 10 10 O 1.42893 * 109.47140 * 174.99952 * 9 6 5 11 11 S 1.65606 * 119.99943 * 125.37512 * 4 2 1 12 12 O 1.42098 * 104.27349 * 153.92765 * 11 4 2 13 13 O 1.42097 * 104.27375 * 26.07210 * 11 4 2 14 14 C 1.81400 * 104.44808 * 270.00065 * 11 4 2 15 15 C 1.53002 * 109.46742 * 182.90183 * 14 11 4 16 16 C 1.50701 * 115.54753 * 305.67178 * 15 14 11 17 17 H 1.08006 * 119.99634 * 95.02152 * 16 15 14 18 18 C 1.37875 * 120.00625 * 275.02752 * 16 15 14 19 19 N 1.31520 * 119.99612 * 6.30346 * 18 16 15 20 20 Si 1.86798 * 120.00476 * 186.30991 * 18 16 15 21 21 H 1.48499 * 109.46844 * 269.99688 * 20 18 16 22 22 H 1.48500 * 109.47166 * 29.99334 * 20 18 16 23 23 H 1.48492 * 109.47233 * 149.99778 * 20 18 16 24 24 C 1.52997 * 117.50166 * 91.34666 * 15 14 11 25 25 C 1.52994 * 117.49832 * 160.00937 * 15 14 11 26 26 H 1.09001 * 109.46372 * 309.73087 * 1 2 3 27 27 H 1.08997 * 109.47127 * 69.72545 * 1 2 3 28 28 H 1.08997 * 109.47123 * 189.73540 * 1 2 3 29 29 H 1.09002 * 109.46730 * 240.00032 * 2 1 3 30 30 H 1.09000 * 109.47093 * 184.57721 * 3 2 1 31 31 H 1.08996 * 109.47188 * 304.57498 * 3 2 1 32 32 H 1.08994 * 109.47349 * 64.57958 * 3 2 1 33 33 H 1.09008 * 109.46824 * 196.26674 * 5 4 2 34 34 H 1.09006 * 109.47158 * 316.25919 * 5 4 2 35 35 H 0.96694 * 113.99948 * 65.19074 * 8 6 5 36 36 H 1.09004 * 109.46901 * 294.99574 * 9 6 5 37 37 H 1.09001 * 109.47283 * 54.99354 * 9 6 5 38 38 H 0.96709 * 113.99868 * 179.97438 * 10 9 6 39 39 H 1.08991 * 109.47245 * 62.90166 * 14 11 4 40 40 H 1.08997 * 109.47144 * 302.89403 * 14 11 4 41 41 H 0.96999 * 119.99584 * 355.24004 * 19 18 16 42 42 H 1.08996 * 117.49623 * 215.00162 * 24 15 14 43 43 H 1.08994 * 117.49760 * 0.02562 * 24 15 14 44 44 H 1.09002 * 117.50113 * 359.96749 * 25 15 14 45 45 H 1.09002 * 117.50163 * 144.96843 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 1.5700 -0.2626 2.5235 6 6 0.1445 -0.7624 2.7660 7 1 -0.5273 -0.3135 2.0343 8 8 0.1096 -2.1849 2.6349 9 6 -0.3010 -0.3690 4.1759 10 8 -1.6704 -0.7324 4.3616 11 16 3.0773 -1.9554 1.0477 12 8 3.7861 -1.9652 2.2793 13 8 3.7470 -1.7092 -0.1811 14 6 2.0162 -3.4204 0.9121 15 6 2.8875 -4.6762 0.8410 16 6 3.9370 -4.6787 -0.2405 17 1 4.9456 -4.3654 -0.0148 18 6 3.6096 -5.0808 -1.5180 19 7 2.3577 -5.3433 -1.8242 20 14 4.9439 -5.2530 -2.8139 21 1 5.1084 -3.9623 -3.5295 22 1 6.2246 -5.6229 -2.1595 23 1 4.5595 -6.3106 -3.7827 24 6 3.2292 -5.3745 2.1588 25 6 2.2301 -6.0128 1.1906 26 1 -0.3632 0.6569 0.7904 27 1 -0.3633 0.3561 -0.9640 28 1 -0.3633 -1.0128 0.1738 29 1 1.8933 -0.5138 -0.8900 30 1 3.1270 1.4435 -0.0820 31 1 1.6114 1.9794 -0.8461 32 1 1.7453 1.9320 0.9281 33 1 2.2342 -0.6765 3.2823 34 1 1.5880 0.8258 2.5796 35 1 0.6228 -2.6545 3.3066 36 1 0.3154 -0.8884 4.9098 37 1 -0.1899 0.7076 4.3050 38 1 -2.0207 -0.5124 5.2357 39 1 1.4097 -3.3475 0.0095 40 1 1.3648 -3.4792 1.7840 41 1 1.6751 -5.3211 -1.1354 42 1 4.2132 -5.8356 2.2435 43 1 2.8331 -4.9395 3.0763 44 1 1.1771 -5.9975 1.4717 45 1 2.5564 -6.8939 0.6381 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000420766699.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:59 Heat of formation + Delta-G solvation = -175.173176 kcal Electronic energy + Delta-G solvation = -28131.489122 eV Core-core repulsion = 24276.128128 eV Total energy + Delta-G solvation = -3855.360994 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.97373 -38.87870 -38.17508 -37.73614 -36.82347 -36.48467 -34.03208 -32.81789 -30.94093 -29.86473 -28.13651 -27.04636 -26.33185 -23.14966 -22.70774 -22.18749 -21.53325 -19.99564 -18.90428 -18.75475 -18.21547 -17.80607 -17.16700 -16.91412 -16.66428 -15.79846 -15.73110 -15.63965 -15.45924 -15.16591 -14.74321 -14.61416 -14.48936 -14.27760 -13.83440 -13.56405 -13.54524 -13.38746 -13.06446 -12.96893 -12.92567 -12.71817 -12.68626 -12.50613 -12.32084 -12.20172 -12.06440 -11.95539 -11.83804 -11.51629 -11.38500 -11.10596 -10.92593 -10.56308 -10.51495 -10.26334 -9.81031 -8.61957 -6.39763 -0.54441 1.49518 1.57658 1.74619 1.86633 2.53320 2.95305 3.04746 3.14949 3.19818 3.39736 3.41113 3.68248 3.94729 3.98578 4.12772 4.16217 4.19946 4.24673 4.33686 4.36281 4.41471 4.47557 4.58809 4.62671 4.63984 4.75454 4.78092 4.81639 4.84323 4.92132 5.02352 5.08874 5.23353 5.27783 5.35915 5.40561 5.42382 5.74589 6.01313 6.15834 6.64446 6.69821 6.93068 7.43806 8.79728 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015654 B = 0.005485 C = 0.004757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.274893 B = 5103.843448 C = 5885.222191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.131 3.869 3 C -0.155 4.155 4 N -0.985 5.985 5 C 0.080 3.920 6 C 0.067 3.933 7 H 0.124 0.876 8 O -0.568 6.568 9 C 0.046 3.954 10 O -0.588 6.588 11 S 2.625 3.375 12 O -0.994 6.994 13 O -0.991 6.991 14 C -0.554 4.554 15 C -0.015 4.015 16 C -0.605 4.605 17 H 0.037 0.963 18 C 0.000 4.000 19 N -0.918 5.918 20 Si 1.093 2.907 21 H -0.280 1.280 22 H -0.272 1.272 23 H -0.273 1.273 24 C -0.177 4.177 25 C -0.159 4.159 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.051 0.949 29 H 0.068 0.932 30 H 0.041 0.959 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.120 0.880 35 H 0.377 0.623 36 H 0.062 0.938 37 H 0.082 0.918 38 H 0.397 0.603 39 H 0.101 0.899 40 H 0.148 0.852 41 H 0.271 0.729 42 H 0.081 0.919 43 H 0.107 0.893 44 H 0.093 0.907 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.149 14.369 12.229 20.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.025 3.975 3 C -0.214 4.214 4 N -0.822 5.822 5 C -0.046 4.046 6 C 0.007 3.993 7 H 0.141 0.859 8 O -0.375 6.375 9 C -0.033 4.033 10 O -0.396 6.396 11 S 2.724 3.276 12 O -0.984 6.984 13 O -0.981 6.981 14 C -0.686 4.686 15 C -0.017 4.017 16 C -0.642 4.642 17 H 0.055 0.945 18 C -0.203 4.203 19 N -0.553 5.553 20 Si 0.916 3.084 21 H -0.206 1.206 22 H -0.197 1.197 23 H -0.198 1.198 24 C -0.214 4.214 25 C -0.198 4.198 26 H 0.105 0.895 27 H 0.096 0.904 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.061 0.939 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.114 0.886 34 H 0.138 0.862 35 H 0.226 0.774 36 H 0.080 0.920 37 H 0.100 0.900 38 H 0.246 0.754 39 H 0.120 0.880 40 H 0.165 0.835 41 H 0.081 0.919 42 H 0.099 0.901 43 H 0.125 0.875 44 H 0.111 0.889 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.236 14.081 9.512 18.470 hybrid contribution -0.405 -0.253 2.324 2.372 sum -7.641 13.828 11.836 19.741 Atomic orbital electron populations 1.22416 0.93247 1.02543 1.03647 1.21023 0.95802 0.94715 0.85921 1.22113 1.00874 0.94249 1.04116 1.57478 1.64722 1.47851 1.12198 1.22143 0.95520 1.03684 0.83214 1.23088 0.96543 0.81676 0.98027 0.85883 1.86682 1.75266 1.18519 1.57024 1.22877 0.83281 1.00919 0.96226 1.86506 1.26396 1.86323 1.40375 1.04269 0.75282 0.75407 0.72671 1.93415 1.71209 1.87361 1.46450 1.93472 1.72618 1.84329 1.47671 1.30092 1.12620 1.15695 1.10169 1.18712 0.97443 0.89710 0.95822 1.21590 0.95678 1.50552 0.96419 0.94474 1.26813 1.01135 0.91963 1.00352 1.70800 1.01161 1.46509 1.36831 0.83274 0.73405 0.77489 0.74265 1.20617 1.19716 1.19759 1.23112 0.99766 1.05063 0.93445 1.22698 0.96989 0.96891 1.03228 0.89531 0.90356 0.92974 0.91344 0.93931 0.89547 0.89892 0.88632 0.86237 0.77407 0.91986 0.89955 0.75361 0.88004 0.83463 0.91853 0.90052 0.87513 0.88865 0.91594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.50 7.59 71.98 0.55 -2.96 16 2 C 0.13 3.61 3.13 44.99 0.14 3.75 16 3 C -0.15 -3.30 9.30 71.98 0.67 -2.63 16 4 N -0.99 -29.43 2.55 -493.38 -1.26 -30.69 16 5 C 0.08 1.68 5.11 86.38 0.44 2.12 16 6 C 0.07 1.31 2.76 30.59 0.08 1.39 16 7 H 0.12 2.45 4.28 -2.38 -0.01 2.44 16 8 O -0.57 -14.26 10.49 -144.34 -1.51 -15.77 16 9 C 0.05 0.62 6.64 71.98 0.48 1.10 16 10 O -0.59 -9.74 13.62 -144.34 -1.97 -11.70 16 11 S 2.63 110.44 4.99 -56.49 -0.28 110.16 16 12 O -0.99 -43.23 16.49 -127.65 -2.11 -45.34 16 13 O -0.99 -51.06 15.77 -127.65 -2.01 -53.07 16 14 C -0.55 -23.67 5.66 71.98 0.41 -23.26 16 15 C -0.01 -0.73 1.04 -52.93 -0.05 -0.78 16 16 C -0.61 -34.98 7.40 25.60 0.19 -34.79 16 17 H 0.04 2.25 7.82 -2.91 -0.02 2.23 16 18 C 0.00 0.00 5.39 84.65 0.46 0.46 16 19 N -0.92 -55.05 13.57 21.45 0.29 -54.76 16 20 Si 1.09 53.16 29.91 68.60 2.05 55.21 16 21 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 22 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 23 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 24 C -0.18 -7.53 9.92 30.62 0.30 -7.23 16 25 C -0.16 -7.18 8.69 30.62 0.27 -6.92 16 26 H 0.09 1.41 6.19 -2.39 -0.01 1.39 16 27 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.05 1.36 7.57 -2.39 -0.02 1.34 16 29 H 0.07 2.36 6.99 -2.39 -0.02 2.34 16 30 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.08 1.30 6.78 -2.39 -0.02 1.28 16 33 H 0.10 2.10 6.73 -2.38 -0.02 2.08 16 34 H 0.12 1.71 6.73 -2.38 -0.02 1.70 16 35 H 0.38 7.80 8.25 -74.06 -0.61 7.19 16 36 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 37 H 0.08 0.68 8.14 -2.39 -0.02 0.67 16 38 H 0.40 2.73 9.12 -74.05 -0.68 2.06 16 39 H 0.10 4.73 7.80 -2.40 -0.02 4.71 16 40 H 0.15 5.18 4.73 -2.39 -0.01 5.17 16 41 H 0.27 15.95 6.14 -92.71 -0.57 15.38 16 42 H 0.08 3.52 8.14 -2.39 -0.02 3.50 16 43 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 44 H 0.09 3.74 8.14 -2.39 -0.02 3.72 16 45 H 0.07 3.23 8.14 -2.39 -0.02 3.21 16 Total: -1.00 -80.37 363.74 -2.94 -83.31 By element: Atomic # 1 Polarization: 32.47 SS G_CDS: -0.07 Total: 32.40 kcal Atomic # 6 Polarization: -73.67 SS G_CDS: 3.93 Total: -69.75 kcal Atomic # 7 Polarization: -84.48 SS G_CDS: -0.97 Total: -85.44 kcal Atomic # 8 Polarization: -118.28 SS G_CDS: -7.60 Total: -125.88 kcal Atomic # 14 Polarization: 53.16 SS G_CDS: 2.05 Total: 55.21 kcal Atomic # 16 Polarization: 110.44 SS G_CDS: -0.28 Total: 110.16 kcal Total: -80.37 -2.94 -83.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420766699.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.866 kcal (2) G-P(sol) polarization free energy of solvation -80.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds