Wall clock time and date at job start Fri Apr 10 2020 18:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 114.00222 * 2 1 4 4 C 1.52991 * 109.47550 * 179.97438 * 3 2 1 5 5 O 1.42909 * 109.47165 * 64.99662 * 4 3 2 6 6 C 1.42893 * 114.00018 * 180.02562 * 5 4 3 7 7 C 1.53002 * 109.47152 * 180.02562 * 6 5 4 8 8 S 1.81397 * 109.47293 * 179.97438 * 7 6 5 9 9 O 1.42105 * 110.54189 * 68.37430 * 8 7 6 10 10 O 1.42099 * 110.54203 * 291.62169 * 8 7 6 11 11 N 1.65608 * 104.44917 * 179.97438 * 8 7 6 12 12 C 1.46494 * 119.99583 * 90.00089 * 11 8 7 13 13 C 1.50703 * 109.47225 * 95.00259 * 12 11 8 14 14 H 1.07996 * 120.00066 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99842 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99597 * 179.97438 * 15 13 12 17 17 Si 1.86797 * 120.00371 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.47175 * 89.99893 * 17 15 13 19 19 H 1.48496 * 109.47237 * 209.99970 * 17 15 13 20 20 H 1.48502 * 109.46952 * 330.00114 * 17 15 13 21 21 C 1.46493 * 119.99916 * 269.72772 * 11 8 7 22 22 C 1.52997 * 109.47398 * 95.00006 * 21 11 8 23 23 C 1.53005 * 117.49989 * 243.61967 * 22 21 11 24 24 C 1.52997 * 60.00061 * 252.50806 * 23 22 21 25 25 H 1.09002 * 109.47245 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46925 * 300.00308 * 1 2 3 27 27 H 1.08997 * 109.46919 * 60.00229 * 1 2 3 28 28 H 1.09002 * 109.47069 * 59.99803 * 3 2 1 29 29 H 1.09005 * 109.46964 * 299.99859 * 3 2 1 30 30 H 1.08998 * 109.47020 * 305.00031 * 4 3 2 31 31 H 1.08997 * 109.47729 * 184.99458 * 4 3 2 32 32 H 1.09001 * 109.47775 * 59.99925 * 6 5 4 33 33 H 1.09001 * 109.47004 * 299.99996 * 6 5 4 34 34 H 1.09001 * 109.47069 * 59.99214 * 7 6 5 35 35 H 1.09001 * 109.46935 * 299.99759 * 7 6 5 36 36 H 1.09005 * 109.47101 * 215.00381 * 12 11 8 37 37 H 1.09001 * 109.47746 * 334.99625 * 12 11 8 38 38 H 0.97008 * 119.99656 * 179.97438 * 16 15 13 39 39 H 1.09004 * 109.46868 * 214.99641 * 21 11 8 40 40 H 1.09004 * 109.47439 * 334.99764 * 21 11 8 41 41 H 1.08997 * 115.54840 * 29.32534 * 22 21 11 42 42 H 1.09002 * 117.49693 * 0.02562 * 23 22 21 43 43 H 1.09000 * 117.49634 * 145.01940 * 23 22 21 44 44 H 1.09001 * 117.50089 * 252.51283 * 24 23 22 45 45 H 1.09003 * 117.50184 * 107.48619 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 8 3.9659 0.5791 -1.2202 6 6 5.3822 0.4186 -1.3216 7 6 5.7267 -0.2350 -2.6613 8 16 7.5247 -0.4381 -2.7904 9 8 7.9849 -1.4089 -1.8602 10 8 8.1623 0.8266 -2.9053 11 7 7.7553 -1.1482 -4.2686 12 6 7.9482 -0.3161 -5.4588 13 6 9.4228 -0.1399 -5.7149 14 1 10.1441 -0.6013 -5.0568 15 6 9.8510 0.6103 -6.7896 16 7 11.1379 0.7643 -7.0128 17 14 8.6035 1.4078 -7.9284 18 1 8.2746 2.7668 -7.4283 19 1 9.1745 1.5082 -9.2955 20 1 7.3696 0.5823 -7.9667 21 6 7.7722 -2.6084 -4.3851 22 6 6.3778 -3.1055 -4.7715 23 6 5.6444 -4.0005 -3.7705 24 6 6.2146 -4.5996 -5.0577 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6887 1.8463 0.8900 29 1 1.6887 1.8463 -0.8900 30 1 3.8508 0.5685 0.8427 31 1 3.9785 2.1765 0.0901 32 1 5.7355 -0.2136 -0.5069 33 1 5.8638 1.3945 -1.2593 34 1 5.3734 0.3975 -3.4757 35 1 5.2451 -1.2108 -2.7240 36 1 7.4851 -0.7994 -6.3191 37 1 7.4882 0.6591 -5.2989 38 1 11.4392 1.2919 -7.7691 39 1 8.4885 -2.9034 -5.1520 40 1 8.0621 -3.0458 -3.4297 41 1 5.7779 -2.4118 -5.3605 42 1 6.1551 -4.2349 -2.8365 43 1 4.5617 -3.8956 -3.7008 44 1 5.5070 -4.8888 -5.8348 45 1 7.1007 -5.2284 -4.9708 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431093050.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:13 Heat of formation + Delta-G solvation = -130.031478 kcal Electronic energy + Delta-G solvation = -25981.607893 eV Core-core repulsion = 22128.204390 eV Total energy + Delta-G solvation = -3853.403503 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -38.74119 -37.74832 -37.49265 -36.60108 -35.44274 -34.91951 -32.31516 -32.28557 -29.83712 -28.39095 -26.56842 -25.64689 -23.44547 -22.86035 -22.30344 -22.01299 -20.27580 -18.33072 -17.62605 -17.14466 -16.98030 -16.82297 -16.15267 -16.01165 -15.71719 -15.51654 -15.25534 -14.94278 -14.33398 -14.14888 -13.99215 -13.78249 -13.46993 -12.71247 -12.54585 -12.49199 -12.13435 -11.99517 -11.87839 -11.75412 -11.57841 -11.53111 -11.45262 -11.36099 -11.35664 -11.24869 -10.73831 -10.59127 -10.55318 -10.24297 -10.13756 -10.02254 -9.84651 -9.67235 -9.51130 -8.57243 -8.13955 -6.05807 -4.04541 0.64834 3.09149 3.28776 3.33307 3.35902 3.42789 3.49586 3.94561 4.32577 4.39926 4.48963 4.59470 4.72716 4.83626 4.87203 4.96475 4.98997 5.01509 5.07796 5.08386 5.11231 5.13609 5.17805 5.25135 5.35715 5.38772 5.53556 5.57155 5.66649 5.74231 5.78252 5.99912 6.06223 6.22857 6.43963 6.51907 6.71048 6.78128 6.94889 7.06024 7.34418 7.59340 8.51371 9.00339 9.53078 11.07830 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012568 B = 0.003656 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.317432 B = 7657.556556 C = 8456.616651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.063 3.937 4 C 0.057 3.943 5 O -0.371 6.371 6 C 0.078 3.922 7 C -0.647 4.647 8 S 2.610 3.390 9 O -0.964 6.964 10 O -0.931 6.931 11 N -0.971 5.971 12 C 0.225 3.775 13 C -0.526 4.526 14 H 0.079 0.921 15 C 0.073 3.927 16 N -0.895 5.895 17 Si 0.870 3.130 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.264 1.264 21 C 0.150 3.850 22 C -0.177 4.177 23 C -0.192 4.192 24 C -0.172 4.172 25 H 0.086 0.914 26 H 0.039 0.961 27 H 0.041 0.959 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.036 0.964 37 H 0.029 0.971 38 H 0.264 0.736 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.109 0.891 42 H 0.098 0.902 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.701 -3.231 11.545 23.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C -0.014 4.014 4 C -0.020 4.020 5 O -0.290 6.290 6 C 0.000 4.000 7 C -0.772 4.772 8 S 2.699 3.301 9 O -0.954 6.954 10 O -0.921 6.921 11 N -0.808 5.808 12 C 0.101 3.899 13 C -0.566 4.566 14 H 0.097 0.903 15 C -0.130 4.130 16 N -0.534 5.534 17 Si 0.696 3.304 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.189 1.189 21 C 0.023 3.977 22 C -0.197 4.197 23 C -0.229 4.229 24 C -0.209 4.209 25 H 0.104 0.896 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.154 0.846 35 H 0.155 0.845 36 H 0.054 0.946 37 H 0.047 0.953 38 H 0.074 0.926 39 H 0.114 0.886 40 H 0.105 0.895 41 H 0.127 0.873 42 H 0.116 0.884 43 H 0.109 0.891 44 H 0.110 0.890 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -18.937 -3.110 11.874 22.567 hybrid contribution -1.416 0.781 -0.909 1.855 sum -20.352 -2.329 10.966 23.235 Atomic orbital electron populations 1.22750 0.81102 1.02882 0.99839 1.87976 1.19566 1.27319 1.95368 1.22568 0.92312 0.85520 1.00962 1.22599 0.93458 0.97970 0.87999 1.88002 1.21067 1.82074 1.37850 1.22010 0.83361 0.99725 0.94886 1.31098 1.30482 1.10754 1.04839 1.05073 0.76510 0.74686 0.73844 1.93527 1.78178 1.61266 1.62470 1.93651 1.70399 1.42876 1.85190 1.57137 1.85324 1.13174 1.25202 1.19496 0.98491 0.89027 0.82846 1.21341 0.90338 1.32472 1.12411 0.90267 1.24857 0.95085 0.95716 0.97306 1.69896 1.13552 1.40292 1.29651 0.86960 0.82073 0.80684 0.80653 1.19836 1.20985 1.18917 1.20864 0.94053 0.79484 1.03283 1.23067 0.99500 0.93690 1.03412 1.23152 1.00045 1.05220 0.94442 1.22864 1.03170 0.95760 0.99148 0.89560 0.94211 0.94005 0.91706 0.92265 0.92059 0.91332 0.91863 0.91817 0.84583 0.84470 0.94610 0.95288 0.92564 0.88634 0.89532 0.87309 0.88390 0.89080 0.89029 0.88545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.38 -4.23 10.67 -40.08 -0.43 -4.66 16 3 C 0.06 0.56 6.32 37.15 0.23 0.80 16 4 C 0.06 0.56 6.32 37.15 0.23 0.80 16 5 O -0.37 -4.98 10.31 -40.08 -0.41 -5.40 16 6 C 0.08 1.04 5.95 37.16 0.22 1.26 16 7 C -0.65 -9.19 6.55 37.16 0.24 -8.94 16 8 S 2.61 48.59 5.37 -107.50 -0.58 48.01 16 9 O -0.96 -19.00 16.52 -57.54 -0.95 -19.96 16 10 O -0.93 -21.13 16.99 -57.54 -0.98 -22.10 16 11 N -0.97 -19.03 2.70 -115.67 -0.31 -19.34 16 12 C 0.22 5.14 4.08 -5.20 -0.02 5.11 16 13 C -0.53 -14.82 9.94 -34.44 -0.34 -15.16 16 14 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 15 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 16 N -0.90 -27.46 13.96 55.43 0.77 -26.68 16 17 Si 0.87 20.88 27.47 -169.99 -4.67 16.21 16 18 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.26 -5.86 6.54 56.52 0.37 -5.49 16 21 C 0.15 2.52 5.94 -4.05 -0.02 2.49 16 22 C -0.18 -2.44 6.01 -90.62 -0.54 -2.99 16 23 C -0.19 -2.27 10.18 -26.73 -0.27 -2.55 16 24 C -0.17 -2.00 10.25 -26.73 -0.27 -2.28 16 25 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.14 1.82 8.14 -51.92 -0.42 1.40 16 35 H 0.14 1.76 8.14 -51.92 -0.42 1.34 16 36 H 0.04 0.78 7.17 -51.93 -0.37 0.40 16 37 H 0.03 0.66 7.04 -51.93 -0.37 0.29 16 38 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 39 H 0.10 1.69 8.11 -51.93 -0.42 1.27 16 40 H 0.09 1.41 6.54 -51.93 -0.34 1.07 16 41 H 0.11 1.51 8.14 -51.93 -0.42 1.09 16 42 H 0.10 1.15 8.03 -51.93 -0.42 0.74 16 43 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 388.13 15.07 5.85 5.85 Total: -1.00 -35.68 388.13 -9.08 -44.77 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -7.85 Total: 1.41 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: 0.47 Total: -18.11 kcal Atomic # 7 Polarization: -46.48 SS G_CDS: 0.46 Total: -46.02 kcal Atomic # 8 Polarization: -49.34 SS G_CDS: -2.77 Total: -52.11 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.67 Total: 16.21 kcal Atomic # 16 Polarization: 48.59 SS G_CDS: -0.58 Total: 48.01 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.68 -9.08 -44.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431093050.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.266 kcal (2) G-P(sol) polarization free energy of solvation -35.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds