Wall clock time and date at job start Fri Apr 10 2020 18:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 114.00222 * 2 1 4 4 C 1.52991 * 109.47550 * 179.97438 * 3 2 1 5 5 O 1.42909 * 109.47165 * 64.99662 * 4 3 2 6 6 C 1.42893 * 114.00018 * 180.02562 * 5 4 3 7 7 C 1.53002 * 109.47152 * 180.02562 * 6 5 4 8 8 S 1.81397 * 109.47293 * 179.97438 * 7 6 5 9 9 O 1.42105 * 110.54189 * 68.37430 * 8 7 6 10 10 O 1.42099 * 110.54203 * 291.62169 * 8 7 6 11 11 N 1.65608 * 104.44917 * 179.97438 * 8 7 6 12 12 C 1.46494 * 119.99583 * 90.00089 * 11 8 7 13 13 C 1.50703 * 109.47225 * 95.00259 * 12 11 8 14 14 H 1.07996 * 120.00066 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99842 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99597 * 179.97438 * 15 13 12 17 17 Si 1.86797 * 120.00371 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.47175 * 89.99893 * 17 15 13 19 19 H 1.48496 * 109.47237 * 209.99970 * 17 15 13 20 20 H 1.48502 * 109.46952 * 330.00114 * 17 15 13 21 21 C 1.46493 * 119.99916 * 269.72772 * 11 8 7 22 22 C 1.52997 * 109.47398 * 95.00006 * 21 11 8 23 23 C 1.53005 * 117.49989 * 243.61967 * 22 21 11 24 24 C 1.52997 * 60.00061 * 252.50806 * 23 22 21 25 25 H 1.09002 * 109.47245 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46925 * 300.00308 * 1 2 3 27 27 H 1.08997 * 109.46919 * 60.00229 * 1 2 3 28 28 H 1.09002 * 109.47069 * 59.99803 * 3 2 1 29 29 H 1.09005 * 109.46964 * 299.99859 * 3 2 1 30 30 H 1.08998 * 109.47020 * 305.00031 * 4 3 2 31 31 H 1.08997 * 109.47729 * 184.99458 * 4 3 2 32 32 H 1.09001 * 109.47775 * 59.99925 * 6 5 4 33 33 H 1.09001 * 109.47004 * 299.99996 * 6 5 4 34 34 H 1.09001 * 109.47069 * 59.99214 * 7 6 5 35 35 H 1.09001 * 109.46935 * 299.99759 * 7 6 5 36 36 H 1.09005 * 109.47101 * 215.00381 * 12 11 8 37 37 H 1.09001 * 109.47746 * 334.99625 * 12 11 8 38 38 H 0.97008 * 119.99656 * 179.97438 * 16 15 13 39 39 H 1.09004 * 109.46868 * 214.99641 * 21 11 8 40 40 H 1.09004 * 109.47439 * 334.99764 * 21 11 8 41 41 H 1.08997 * 115.54840 * 29.32534 * 22 21 11 42 42 H 1.09002 * 117.49693 * 0.02562 * 23 22 21 43 43 H 1.09000 * 117.49634 * 145.01940 * 23 22 21 44 44 H 1.09001 * 117.50089 * 252.51283 * 24 23 22 45 45 H 1.09003 * 117.50184 * 107.48619 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 8 3.9659 0.5791 -1.2202 6 6 5.3822 0.4186 -1.3216 7 6 5.7267 -0.2350 -2.6613 8 16 7.5247 -0.4381 -2.7904 9 8 7.9849 -1.4089 -1.8602 10 8 8.1623 0.8266 -2.9053 11 7 7.7553 -1.1482 -4.2686 12 6 7.9482 -0.3161 -5.4588 13 6 9.4228 -0.1399 -5.7149 14 1 10.1441 -0.6013 -5.0568 15 6 9.8510 0.6103 -6.7896 16 7 11.1379 0.7643 -7.0128 17 14 8.6035 1.4078 -7.9284 18 1 8.2746 2.7668 -7.4283 19 1 9.1745 1.5082 -9.2955 20 1 7.3696 0.5823 -7.9667 21 6 7.7722 -2.6084 -4.3851 22 6 6.3778 -3.1055 -4.7715 23 6 5.6444 -4.0005 -3.7705 24 6 6.2146 -4.5996 -5.0577 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6887 1.8463 0.8900 29 1 1.6887 1.8463 -0.8900 30 1 3.8508 0.5685 0.8427 31 1 3.9785 2.1765 0.0901 32 1 5.7355 -0.2136 -0.5069 33 1 5.8638 1.3945 -1.2593 34 1 5.3734 0.3975 -3.4757 35 1 5.2451 -1.2108 -2.7240 36 1 7.4851 -0.7994 -6.3191 37 1 7.4882 0.6591 -5.2989 38 1 11.4392 1.2919 -7.7691 39 1 8.4885 -2.9034 -5.1520 40 1 8.0621 -3.0458 -3.4297 41 1 5.7779 -2.4118 -5.3605 42 1 6.1551 -4.2349 -2.8365 43 1 4.5617 -3.8956 -3.7008 44 1 5.5070 -4.8888 -5.8348 45 1 7.1007 -5.2284 -4.9708 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431093050.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:11 Heat of formation + Delta-G solvation = -157.094862 kcal Electronic energy + Delta-G solvation = -25982.781450 eV Core-core repulsion = 22128.204390 eV Total energy + Delta-G solvation = -3854.577059 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -39.53839 -38.92770 -38.27686 -38.18759 -37.01854 -36.42230 -34.38877 -33.28662 -30.63895 -30.20588 -27.19405 -27.12494 -24.61109 -23.90873 -23.55723 -23.12134 -21.43626 -19.82306 -19.03198 -18.86101 -18.03292 -17.91954 -17.44274 -17.17383 -16.78249 -16.39068 -16.27215 -16.09617 -15.98336 -15.46705 -15.15973 -14.79429 -14.56024 -14.43862 -14.10107 -13.57085 -13.37479 -13.34904 -13.18493 -12.97268 -12.93156 -12.89423 -12.73245 -12.45357 -12.34759 -12.26757 -12.21907 -12.11545 -11.99975 -11.77468 -11.66978 -11.20428 -10.77873 -10.75222 -10.72718 -10.63140 -9.75073 -8.25544 -6.30578 -0.80684 1.38501 1.42638 1.50659 1.67507 2.38057 2.49604 2.85506 2.94736 3.01966 3.07663 3.17084 3.51368 3.72573 3.87665 3.97164 4.05909 4.09663 4.12650 4.20036 4.32051 4.40152 4.42002 4.45013 4.47710 4.57427 4.58132 4.64096 4.76953 4.81828 4.86422 4.87051 4.89556 5.01388 5.10359 5.31697 5.35147 5.42434 5.51698 5.76604 6.01255 6.24722 6.34095 6.72379 7.31555 8.92362 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012568 B = 0.003656 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.317432 B = 7657.556556 C = 8456.616651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.060 3.940 4 C 0.045 3.955 5 O -0.387 6.387 6 C 0.068 3.932 7 C -0.614 4.614 8 S 2.608 3.392 9 O -0.985 6.985 10 O -0.983 6.983 11 N -0.981 5.981 12 C 0.232 3.768 13 C -0.537 4.537 14 H 0.026 0.974 15 C 0.005 3.995 16 N -0.951 5.951 17 Si 0.942 3.058 18 H -0.268 1.268 19 H -0.281 1.281 20 H -0.226 1.226 21 C 0.146 3.854 22 C -0.191 4.191 23 C -0.181 4.181 24 C -0.163 4.163 25 H 0.091 0.909 26 H 0.056 0.944 27 H 0.046 0.954 28 H 0.093 0.907 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.153 0.847 35 H 0.159 0.841 36 H 0.058 0.942 37 H 0.040 0.960 38 H 0.267 0.733 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.115 0.885 42 H 0.095 0.905 43 H 0.110 0.890 44 H 0.110 0.890 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.900 -3.236 11.471 26.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.336 6.336 3 C -0.016 4.016 4 C -0.032 4.032 5 O -0.307 6.307 6 C -0.010 4.010 7 C -0.744 4.744 8 S 2.703 3.297 9 O -0.976 6.976 10 O -0.973 6.973 11 N -0.817 5.817 12 C 0.107 3.893 13 C -0.576 4.576 14 H 0.044 0.956 15 C -0.193 4.193 16 N -0.592 5.592 17 Si 0.764 3.236 18 H -0.193 1.193 19 H -0.207 1.207 20 H -0.149 1.149 21 C 0.021 3.979 22 C -0.211 4.211 23 C -0.218 4.218 24 C -0.200 4.200 25 H 0.110 0.890 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.111 0.889 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.108 0.892 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.171 0.829 35 H 0.177 0.823 36 H 0.076 0.924 37 H 0.057 0.943 38 H 0.075 0.925 39 H 0.093 0.907 40 H 0.103 0.897 41 H 0.133 0.867 42 H 0.114 0.886 43 H 0.128 0.872 44 H 0.128 0.872 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -23.104 -3.157 11.820 26.143 hybrid contribution -0.098 0.727 -0.718 1.026 sum -23.202 -2.430 11.103 25.836 Atomic orbital electron populations 1.22910 0.79563 1.03678 1.00894 1.87921 1.21423 1.28613 1.95624 1.22708 0.91446 0.85121 1.02322 1.22930 0.94461 0.98961 0.86812 1.87955 1.20377 1.82693 1.39651 1.22112 0.84115 1.00463 0.94322 1.30655 1.24524 1.12726 1.06532 1.04777 0.78447 0.73293 0.73139 1.93491 1.80017 1.61382 1.62690 1.93588 1.73420 1.44704 1.85631 1.57014 1.86428 1.14035 1.24253 1.19270 0.94794 0.90344 0.84871 1.21679 0.92676 1.31784 1.11454 0.95594 1.25945 0.97433 0.96437 0.99447 1.70084 1.16380 1.41875 1.30859 0.85806 0.80287 0.79908 0.77620 1.19300 1.20683 1.14868 1.20927 0.96141 0.78180 1.02663 1.22868 0.97694 0.95074 1.05492 1.23234 1.00882 1.03488 0.94204 1.22990 1.03534 0.93892 0.99596 0.89019 0.92536 0.93533 0.88941 0.92220 0.91661 0.89242 0.90883 0.90964 0.82897 0.82309 0.92407 0.94259 0.92464 0.90683 0.89717 0.86719 0.88613 0.87196 0.87212 0.88444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 113.37 1.25 1.56 16 2 O -0.42 -8.25 10.67 -144.34 -1.54 -9.79 16 3 C 0.06 0.91 6.32 71.98 0.45 1.37 16 4 C 0.04 0.77 6.32 71.98 0.45 1.23 16 5 O -0.39 -9.33 10.31 -144.34 -1.49 -10.82 16 6 C 0.07 1.65 5.95 71.98 0.43 2.08 16 7 C -0.61 -15.86 6.55 71.98 0.47 -15.38 16 8 S 2.61 97.03 5.37 -56.49 -0.30 96.73 16 9 O -0.99 -39.38 16.52 -127.65 -2.11 -41.49 16 10 O -0.98 -45.72 16.99 -127.65 -2.17 -47.89 16 11 N -0.98 -38.50 2.70 -519.86 -1.40 -39.90 16 12 C 0.23 10.49 4.08 85.64 0.35 10.84 16 13 C -0.54 -31.34 9.94 25.60 0.25 -31.09 16 14 H 0.03 1.72 8.06 -2.91 -0.02 1.70 16 15 C 0.00 0.27 5.47 84.66 0.46 0.73 16 16 N -0.95 -60.82 13.96 21.45 0.30 -60.52 16 17 Si 0.94 42.59 27.47 68.60 1.88 44.47 16 18 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 19 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 20 H -0.23 -8.77 6.54 99.48 0.65 -8.12 16 21 C 0.15 4.95 5.94 86.38 0.51 5.47 16 22 C -0.19 -4.88 6.01 -10.79 -0.06 -4.95 16 23 C -0.18 -3.77 10.18 30.59 0.31 -3.46 16 24 C -0.16 -3.37 10.25 30.59 0.31 -3.05 16 25 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 30 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.15 3.56 8.14 -2.39 -0.02 3.54 16 35 H 0.16 3.50 8.14 -2.39 -0.02 3.49 16 36 H 0.06 2.37 7.17 -2.38 -0.02 2.36 16 37 H 0.04 1.71 7.04 -2.39 -0.02 1.69 16 38 H 0.27 15.81 8.31 -92.70 -0.77 15.04 16 39 H 0.07 2.77 8.11 -2.39 -0.02 2.75 16 40 H 0.08 2.82 6.54 -2.39 -0.02 2.81 16 41 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 42 H 0.10 2.04 8.03 -2.39 -0.02 2.02 16 43 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.11 1.90 8.14 -2.39 -0.02 1.89 16 45 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -81.28 388.13 -0.74 -82.02 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: 0.89 Total: 21.84 kcal Atomic # 6 Polarization: -39.86 SS G_CDS: 5.20 Total: -34.66 kcal Atomic # 7 Polarization: -99.31 SS G_CDS: -1.10 Total: -100.42 kcal Atomic # 8 Polarization: -102.69 SS G_CDS: -7.31 Total: -109.99 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 1.88 Total: 44.47 kcal Atomic # 16 Polarization: 97.03 SS G_CDS: -0.30 Total: 96.73 kcal Total: -81.28 -0.74 -82.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431093050.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.071 kcal (2) G-P(sol) polarization free energy of solvation -81.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds