Wall clock time and date at job start Fri Apr 10 2020 18:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99895 * 2 1 4 4 H 1.48501 * 109.47179 * 269.99761 * 3 2 1 5 5 H 1.48497 * 109.47133 * 29.99984 * 3 2 1 6 6 H 1.48503 * 109.46924 * 150.00070 * 3 2 1 7 7 C 1.37874 * 119.99917 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99827 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00196 * 179.97438 * 7 2 1 10 10 C 1.52994 * 109.47464 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47161 * 179.97438 * 10 9 7 12 12 S 1.81406 * 109.47078 * 180.02562 * 11 10 9 13 13 O 1.42097 * 110.54242 * 68.37978 * 12 11 10 14 14 O 1.42100 * 110.54304 * 291.62695 * 12 11 10 15 15 N 1.65596 * 104.44797 * 180.02562 * 12 11 10 16 16 C 1.46505 * 119.99941 * 65.00238 * 15 12 11 17 17 C 1.52997 * 109.47212 * 164.99768 * 16 15 12 18 18 H 1.08998 * 109.47533 * 59.99637 * 17 16 15 19 19 O 1.42905 * 109.47264 * 299.99925 * 17 16 15 20 20 C 1.52992 * 109.47482 * 179.97438 * 17 16 15 21 21 O 1.42905 * 109.47641 * 184.99974 * 20 17 16 22 22 C 1.42893 * 114.00054 * 180.02562 * 21 20 17 23 23 C 1.53001 * 109.47242 * 179.97438 * 22 21 20 24 24 C 1.52996 * 117.50300 * 243.75172 * 23 22 21 25 25 C 1.52998 * 117.50550 * 175.08749 * 23 22 21 26 26 H 0.97006 * 120.00222 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.46730 * 59.99899 * 9 7 2 28 28 H 1.08996 * 109.47141 * 300.00866 * 9 7 2 29 29 H 1.09004 * 109.46725 * 60.00769 * 10 9 7 30 30 H 1.08996 * 109.47644 * 300.00552 * 10 9 7 31 31 H 1.09004 * 109.46523 * 60.00829 * 11 10 9 32 32 H 1.08991 * 109.47592 * 300.00386 * 11 10 9 33 33 H 0.96997 * 120.00145 * 244.99357 * 15 12 11 34 34 H 1.09002 * 109.47068 * 284.99828 * 16 15 12 35 35 H 1.09001 * 109.47372 * 44.99916 * 16 15 12 36 36 H 0.96696 * 114.00036 * 299.99911 * 19 17 16 37 37 H 1.09001 * 109.47563 * 305.00337 * 20 17 16 38 38 H 1.09004 * 109.47313 * 64.99993 * 20 17 16 39 39 H 1.09002 * 109.47456 * 300.00152 * 22 21 20 40 40 H 1.08999 * 109.47379 * 60.00011 * 22 21 20 41 41 H 1.09009 * 115.54834 * 29.41676 * 23 22 21 42 42 H 1.09002 * 117.50002 * 359.97438 * 24 23 22 43 43 H 1.09004 * 117.50346 * 145.01854 * 24 23 22 44 44 H 1.08992 * 117.49935 * 214.98257 * 25 23 22 45 45 H 1.09007 * 117.49212 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4644 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6365 0.0001 11 6 5.5515 -2.6365 -0.0012 12 16 6.1562 -4.3468 -0.0018 13 8 5.8591 -4.9803 -1.2386 14 8 5.8610 -4.9805 1.2354 15 7 7.8058 -4.2019 -0.0024 16 6 8.4890 -3.6039 1.1474 17 6 9.9840 -3.9203 1.0735 18 1 10.3971 -3.5104 0.1519 19 8 10.1726 -5.3368 1.0912 20 6 10.6976 -3.2954 2.2738 21 8 12.1074 -3.4908 2.1448 22 6 12.8711 -2.9420 3.2206 23 6 14.3581 -3.2092 2.9788 24 6 15.0873 -4.1048 3.9822 25 6 15.3554 -2.5978 3.9648 26 1 -0.4851 0.8401 0.0004 27 1 3.8752 -0.6797 0.8895 28 1 3.8745 -0.6808 -0.8904 29 1 3.6579 -3.1505 -0.8898 30 1 3.6585 -3.1503 0.8902 31 1 5.9155 -2.1225 0.8885 32 1 5.9142 -2.1230 -0.8915 33 1 8.3197 -4.5129 -0.7639 34 1 8.3452 -2.5235 1.1339 35 1 8.0760 -4.0139 2.0691 36 1 9.8283 -5.7695 1.8844 37 1 10.4807 -2.2278 2.3102 38 1 10.3478 -3.7686 3.1913 39 1 12.6992 -1.8671 3.2770 40 1 12.5663 -3.4082 4.1575 41 1 14.6600 -3.2750 1.9334 42 1 14.5079 -4.5033 4.8151 43 1 15.8692 -4.7594 3.5973 44 1 16.3134 -2.2617 3.5683 45 1 14.9521 -2.0047 4.7857 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000443227088.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:43 Heat of formation + Delta-G solvation = -160.001921 kcal Electronic energy + Delta-G solvation = -24489.183489 eV Core-core repulsion = 20634.480370 eV Total energy + Delta-G solvation = -3854.703119 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.32102 -38.12487 -36.98195 -36.58717 -35.83904 -34.84953 -34.65273 -32.24391 -30.68064 -28.41543 -27.61823 -25.15943 -23.65270 -22.88238 -22.40031 -21.09810 -20.53860 -19.29494 -17.92478 -17.51481 -17.03226 -17.00327 -16.86995 -16.07451 -15.98244 -15.57120 -15.36345 -15.05190 -14.89943 -14.25049 -14.20368 -14.12364 -13.47823 -13.08611 -12.92768 -12.72396 -12.37371 -12.18244 -12.06866 -12.02975 -11.96293 -11.89526 -11.68746 -11.60780 -11.27420 -11.02474 -10.99078 -10.97896 -10.75898 -10.46083 -10.13090 -10.01930 -9.95505 -9.85899 -9.43817 -9.28298 -8.61490 -6.10929 -4.10406 0.34361 2.63236 2.98770 3.23998 3.31472 3.32989 3.35698 3.85207 3.98616 4.17640 4.31018 4.35912 4.37502 4.37940 4.41181 4.55454 4.69965 4.78595 4.86256 4.87677 4.93841 5.01285 5.03100 5.09462 5.12905 5.14661 5.22672 5.38927 5.45946 5.59904 5.61621 5.69391 5.71429 6.10507 6.22551 6.63252 6.69303 6.80547 7.09030 7.22961 7.28820 7.68170 8.44895 8.93470 9.49973 11.02304 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015825 B = 0.002219 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.958142 B =12615.790596 C =14046.465250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.067 3.933 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.528 4.528 8 H 0.075 0.925 9 C -0.004 4.004 10 C -0.098 4.098 11 C -0.616 4.616 12 S 2.606 3.394 13 O -0.958 6.958 14 O -0.961 6.961 15 N -1.117 6.117 16 C 0.084 3.916 17 C 0.107 3.893 18 H 0.114 0.886 19 O -0.546 6.546 20 C 0.029 3.971 21 O -0.374 6.374 22 C 0.092 3.908 23 C -0.154 4.154 24 C -0.177 4.177 25 C -0.175 4.175 26 H 0.264 0.736 27 H 0.019 0.981 28 H 0.016 0.984 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.125 0.875 32 H 0.129 0.871 33 H 0.419 0.581 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.377 0.623 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.054 0.946 40 H 0.051 0.949 41 H 0.114 0.886 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.098 0.902 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.954 -5.110 7.253 31.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.134 4.134 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.566 4.566 8 H 0.093 0.907 9 C -0.043 4.043 10 C -0.137 4.137 11 C -0.748 4.748 12 S 2.702 3.298 13 O -0.948 6.948 14 O -0.950 6.950 15 N -0.876 5.876 16 C -0.044 4.044 17 C 0.046 3.954 18 H 0.132 0.868 19 O -0.351 6.351 20 C -0.049 4.049 21 O -0.293 6.293 22 C 0.015 3.985 23 C -0.172 4.172 24 C -0.214 4.214 25 C -0.212 4.212 26 H 0.074 0.926 27 H 0.038 0.962 28 H 0.034 0.966 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.144 0.856 32 H 0.148 0.852 33 H 0.254 0.746 34 H 0.095 0.905 35 H 0.105 0.895 36 H 0.225 0.775 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.132 0.868 42 H 0.114 0.886 43 H 0.115 0.885 44 H 0.117 0.883 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 29.589 -5.748 6.692 30.876 hybrid contribution 0.358 1.735 0.479 1.835 sum 29.948 -4.013 7.172 31.055 Atomic orbital electron populations 1.69911 1.06277 1.26989 1.50622 1.25031 0.94768 0.99175 0.94463 0.86769 0.80267 0.83624 0.78531 1.20222 1.21265 1.19113 1.21134 0.89253 0.94786 1.51401 0.90717 1.19529 0.97355 0.90732 0.96691 1.21314 0.86606 1.02944 1.02870 1.30613 1.09571 1.23504 1.11102 1.05162 0.72516 0.77887 0.74282 1.93596 1.82554 1.73570 1.45115 1.93568 1.82965 1.72774 1.45739 1.55571 1.26413 1.78257 1.27374 1.21875 0.93759 0.98815 0.89939 1.22044 0.91854 0.82412 0.99112 0.86785 1.86638 1.83558 1.18293 1.46602 1.23207 0.82278 1.00610 0.98755 1.87937 1.16525 1.79494 1.45354 1.22029 0.89499 0.97336 0.89611 1.22131 0.91841 1.05532 0.97700 1.23089 1.03433 0.93258 1.01603 1.22998 1.00240 0.96307 1.01634 0.92610 0.96223 0.96612 0.90930 0.90933 0.85616 0.85225 0.74615 0.90477 0.89546 0.77546 0.91849 0.92415 0.92810 0.93119 0.86780 0.88638 0.88523 0.88326 0.88626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.16 27.47 -169.99 -4.67 16.49 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.04 6.54 56.52 0.37 -5.67 16 7 C -0.53 -14.87 9.66 -34.44 -0.33 -15.20 16 8 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 9 C 0.00 -0.10 4.04 -27.89 -0.11 -0.21 16 10 C -0.10 -1.85 5.16 -26.73 -0.14 -1.99 16 11 C -0.62 -8.29 6.07 37.16 0.23 -8.07 16 12 S 2.61 34.65 5.46 -107.50 -0.59 34.06 16 13 O -0.96 -16.07 18.08 -57.54 -1.04 -17.11 16 14 O -0.96 -15.51 17.49 -57.54 -1.01 -16.52 16 15 N -1.12 -10.52 5.75 -10.61 -0.06 -10.58 16 16 C 0.08 0.61 5.80 -4.04 -0.02 0.59 16 17 C 0.11 0.77 3.34 -26.74 -0.09 0.68 16 18 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 19 O -0.55 -4.89 13.17 -40.06 -0.53 -5.41 16 20 C 0.03 0.19 5.57 37.15 0.21 0.40 16 21 O -0.37 -3.23 10.31 -40.06 -0.41 -3.64 16 22 C 0.09 0.61 6.22 37.16 0.23 0.84 16 23 C -0.15 -1.00 6.05 -90.62 -0.55 -1.55 16 24 C -0.18 -0.98 10.18 -26.70 -0.27 -1.26 16 25 C -0.17 -0.87 10.25 -26.69 -0.27 -1.15 16 26 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 27 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 28 H 0.02 0.35 7.57 -51.93 -0.39 -0.05 16 29 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 31 H 0.13 1.40 8.14 -51.92 -0.42 0.97 16 32 H 0.13 1.50 8.14 -51.93 -0.42 1.08 16 33 H 0.42 3.60 8.62 -34.47 -0.30 3.30 16 34 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.09 0.62 7.69 -51.93 -0.40 0.22 16 36 H 0.38 2.34 9.05 45.56 0.41 2.75 16 37 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 40 H 0.05 0.30 7.87 -51.93 -0.41 -0.11 16 41 H 0.11 0.82 8.14 -51.92 -0.42 0.39 16 42 H 0.10 0.49 8.03 -51.93 -0.42 0.07 16 43 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 388.43 15.07 5.85 5.85 Total: -1.00 -37.32 388.43 -9.86 -47.18 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -6.96 Total: 1.48 kcal Atomic # 6 Polarization: -23.85 SS G_CDS: -1.22 Total: -25.08 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 0.71 Total: -37.29 kcal Atomic # 8 Polarization: -39.70 SS G_CDS: -2.99 Total: -42.69 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.67 Total: 16.49 kcal Atomic # 16 Polarization: 34.65 SS G_CDS: -0.59 Total: 34.06 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -37.32 -9.86 -47.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000443227088.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.825 kcal (2) G-P(sol) polarization free energy of solvation -37.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds