Wall clock time and date at job start Fri Apr 10 2020 18:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42901 * 109.47129 * 2 1 4 4 C 1.42899 * 114.00040 * 179.97438 * 3 2 1 5 5 C 1.53782 * 113.61438 * 209.99950 * 4 3 2 6 6 C 1.53777 * 87.08033 * 220.01888 * 5 4 3 7 7 O 1.42898 * 113.61418 * 270.80265 * 6 5 4 8 8 C 1.53007 * 113.61466 * 139.98133 * 6 5 4 9 9 N 1.46499 * 109.47083 * 186.53062 * 8 6 5 10 10 S 1.65593 * 119.99833 * 165.00158 * 9 8 6 11 11 O 1.42104 * 104.27905 * 308.92754 * 10 9 8 12 12 O 1.42102 * 104.27718 * 181.06534 * 10 9 8 13 13 C 1.81399 * 104.45079 * 64.99683 * 10 9 8 14 14 C 1.53005 * 109.47445 * 179.97438 * 13 10 9 15 15 C 1.52996 * 109.47245 * 179.97438 * 14 13 10 16 16 C 1.50703 * 109.46946 * 180.02562 * 15 14 13 17 17 H 1.08005 * 119.99876 * 0.02562 * 16 15 14 18 18 C 1.37874 * 119.99789 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00287 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99733 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47151 * 90.00298 * 20 18 16 22 22 H 1.48507 * 109.47197 * 210.00055 * 20 18 16 23 23 H 1.48498 * 109.47171 * 330.00226 * 20 18 16 24 24 C 1.53785 * 87.17612 * 25.39013 * 6 5 4 25 25 H 1.08998 * 109.47177 * 299.99895 * 1 2 3 26 26 H 1.09002 * 109.46779 * 60.00126 * 1 2 3 27 27 H 1.09000 * 109.47081 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47177 * 240.00105 * 2 1 3 29 29 H 1.09002 * 109.46779 * 119.99874 * 2 1 3 30 30 H 1.09003 * 112.84724 * 341.19657 * 4 3 2 31 31 H 1.09004 * 113.61313 * 105.46832 * 5 4 3 32 32 H 1.09002 * 113.69001 * 334.58199 * 5 4 3 33 33 H 0.96704 * 114.00230 * 178.47789 * 7 6 5 34 34 H 1.08996 * 109.46521 * 66.52588 * 8 6 5 35 35 H 1.09000 * 109.47048 * 306.52955 * 8 6 5 36 36 H 0.97001 * 119.99882 * 344.99630 * 9 8 6 37 37 H 1.09001 * 109.47190 * 299.99797 * 13 10 9 38 38 H 1.09004 * 109.47089 * 59.99930 * 13 10 9 39 39 H 1.09001 * 109.46962 * 300.00183 * 14 13 10 40 40 H 1.09004 * 109.46832 * 60.00020 * 14 13 10 41 41 H 1.09001 * 109.47372 * 300.00032 * 15 14 13 42 42 H 1.09004 * 109.47108 * 60.00288 * 15 14 13 43 43 H 0.96996 * 120.00180 * 180.02562 * 19 18 16 44 44 H 1.09002 * 113.60974 * 89.15424 * 24 6 5 45 45 H 1.09002 * 113.61637 * 220.06193 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.9483 2.7253 0.7051 6 6 4.9900 2.8313 -0.4212 7 8 6.2022 2.1257 -0.1480 8 6 5.2315 4.2644 -0.8998 9 7 6.1144 4.2466 -2.0687 10 16 6.2545 5.5939 -3.0210 11 8 4.9125 5.9525 -3.3206 12 8 7.1557 5.2047 -4.0485 13 6 7.0187 6.8346 -1.9405 14 6 7.2036 8.1411 -2.7151 15 6 7.8475 9.1876 -1.8035 16 6 8.0290 10.4746 -2.5662 17 1 7.7160 10.5397 -3.5979 18 6 8.5938 11.5693 -1.9468 19 7 8.9745 11.4902 -0.6904 20 14 8.8194 13.1644 -2.8924 21 1 7.6092 14.0100 -2.7326 22 1 10.0031 13.8895 -2.3648 23 1 9.0252 12.8617 -4.3316 24 6 4.0050 2.0453 -1.3026 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.9278 0.5457 0.3247 31 1 4.3835 2.5320 1.6856 32 1 3.2307 3.5457 0.7149 33 1 6.8523 2.1693 -0.8626 34 1 5.6980 4.8404 -0.1007 35 1 4.2801 4.7224 -1.1701 36 1 6.6170 3.4455 -2.2847 37 1 6.3757 7.0109 -1.0782 38 1 7.9896 6.4729 -1.6019 39 1 7.8468 7.9645 -3.5772 40 1 6.2329 8.5030 -3.0540 41 1 7.2040 9.3641 -0.9416 42 1 8.8182 8.8260 -1.4642 43 1 9.3715 12.2604 -0.2545 44 1 3.3020 2.6787 -1.8437 45 1 4.4859 1.3038 -1.9406 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000443993303.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:47 Heat of formation + Delta-G solvation = -163.178032 kcal Electronic energy + Delta-G solvation = -25117.956430 eV Core-core repulsion = 21263.115585 eV Total energy + Delta-G solvation = -3854.840845 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.49651 -37.80634 -36.95340 -35.82511 -34.73805 -34.69888 -34.60615 -32.20736 -31.23757 -27.84006 -27.44541 -26.18999 -23.75326 -23.30334 -22.58444 -20.73497 -20.21195 -19.38220 -18.14421 -17.31202 -16.87942 -16.54529 -16.35818 -16.05644 -15.76053 -15.48764 -15.12975 -14.72140 -14.48865 -14.20764 -14.02343 -13.58948 -13.31775 -13.09711 -12.62307 -12.55754 -12.40462 -12.31763 -12.24566 -12.00520 -11.95478 -11.86399 -11.81608 -11.59913 -11.28085 -11.25569 -10.93598 -10.87454 -10.75862 -10.46865 -10.30633 -9.97692 -9.81458 -9.72589 -9.35375 -9.11422 -8.42129 -6.07008 -4.10205 0.38533 2.71800 3.29704 3.30611 3.35885 3.39872 3.53976 3.87388 4.02544 4.20584 4.29547 4.36361 4.41425 4.45185 4.67314 4.70409 4.88987 4.97538 4.98913 5.13017 5.14684 5.19737 5.28999 5.29872 5.37347 5.43200 5.47835 5.52028 5.63919 5.68038 5.75406 5.83424 5.85715 6.23338 6.41633 6.65879 6.84615 6.91346 7.18407 7.55013 7.64679 7.90802 8.31076 8.95997 9.54633 11.04155 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.023875 B = 0.002225 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.478192 B =12581.782412 C =12798.019275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.056 3.944 3 O -0.374 6.374 4 C 0.070 3.930 5 C -0.119 4.119 6 C 0.103 3.897 7 O -0.537 6.537 8 C 0.100 3.900 9 N -1.125 6.125 10 S 2.602 3.398 11 O -0.960 6.960 12 O -0.962 6.962 13 C -0.608 4.608 14 C -0.106 4.106 15 C 0.030 3.970 16 C -0.527 4.527 17 H 0.058 0.942 18 C 0.057 3.943 19 N -0.895 5.895 20 Si 0.895 3.105 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.273 1.273 24 C -0.178 4.178 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.047 0.953 29 H 0.048 0.952 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.109 0.891 33 H 0.379 0.621 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.409 0.591 37 H 0.127 0.873 38 H 0.130 0.870 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.021 0.979 42 H 0.021 0.979 43 H 0.262 0.738 44 H 0.103 0.897 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.459 -24.610 3.586 27.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.293 6.293 4 C 0.012 3.988 5 C -0.157 4.157 6 C 0.061 3.939 7 O -0.343 6.343 8 C -0.027 4.027 9 N -0.884 5.884 10 S 2.698 3.302 11 O -0.950 6.950 12 O -0.952 6.952 13 C -0.740 4.740 14 C -0.146 4.146 15 C -0.008 4.008 16 C -0.565 4.565 17 H 0.076 0.924 18 C -0.144 4.144 19 N -0.534 5.534 20 Si 0.722 3.278 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.198 1.198 24 C -0.216 4.216 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.109 0.891 31 H 0.104 0.896 32 H 0.128 0.872 33 H 0.228 0.772 34 H 0.097 0.903 35 H 0.114 0.886 36 H 0.243 0.757 37 H 0.145 0.855 38 H 0.148 0.852 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.039 0.961 42 H 0.039 0.961 43 H 0.071 0.929 44 H 0.122 0.878 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.213 -24.289 3.422 27.402 hybrid contribution 1.191 0.588 -0.341 1.371 sum -11.022 -23.701 3.082 26.320 Atomic orbital electron populations 1.21756 0.93738 1.02225 1.03258 1.22510 0.95648 0.83944 0.99965 1.87953 1.20535 1.26328 1.94534 1.23586 0.80979 0.98023 0.96236 1.23308 0.95560 0.98740 0.98087 1.22054 0.84819 0.89950 0.97116 1.86515 1.26837 1.74746 1.46226 1.21868 0.95535 0.97543 0.87776 1.55705 1.58462 1.30803 1.43401 1.05304 0.75086 0.74743 0.75034 1.93574 1.35311 1.83371 1.82704 1.93584 1.66809 1.81038 1.53805 1.30534 1.13473 1.14563 1.15388 1.21509 1.02228 0.91700 0.99118 1.19066 0.95769 0.91738 0.94220 1.21251 1.40599 0.96380 0.98268 0.92360 1.25023 0.95377 0.99042 0.94961 1.69954 1.41783 1.30681 1.10973 0.86548 0.77703 0.83321 0.80188 1.20563 1.21170 1.19754 1.24253 0.98965 1.00658 0.97693 0.91794 0.91759 0.91184 0.93432 0.93403 0.89087 0.89556 0.87245 0.77172 0.90337 0.88639 0.75703 0.85465 0.85211 0.91545 0.91528 0.96106 0.96103 0.92884 0.87848 0.90598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 10.28 37.16 0.38 -0.52 16 2 C 0.06 0.39 6.50 37.16 0.24 0.63 16 3 O -0.37 -3.50 10.36 -35.23 -0.36 -3.87 16 4 C 0.07 0.57 4.25 -25.83 -0.11 0.46 16 5 C -0.12 -0.94 7.31 -25.92 -0.19 -1.13 16 6 C 0.10 0.83 1.45 -89.80 -0.13 0.70 16 7 O -0.54 -4.31 13.41 -35.23 -0.47 -4.78 16 8 C 0.10 0.87 5.70 -4.04 -0.02 0.84 16 9 N -1.13 -10.51 5.80 -10.61 -0.06 -10.58 16 10 S 2.60 35.47 5.46 -107.50 -0.59 34.88 16 11 O -0.96 -16.03 17.50 -57.54 -1.01 -17.04 16 12 O -0.96 -15.98 18.08 -57.54 -1.04 -17.02 16 13 C -0.61 -8.88 6.07 37.16 0.23 -8.65 16 14 C -0.11 -2.10 5.16 -26.73 -0.14 -2.24 16 15 C 0.03 0.76 4.97 -27.88 -0.14 0.62 16 16 C -0.53 -14.76 9.11 -34.44 -0.31 -15.07 16 17 H 0.06 1.58 7.74 -52.48 -0.41 1.18 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 20 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 23 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 24 C -0.18 -1.47 7.32 -25.82 -0.19 -1.65 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.09 0.69 7.87 -51.93 -0.41 0.28 16 31 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.11 0.82 8.10 -51.93 -0.42 0.40 16 33 H 0.38 1.96 7.48 45.56 0.34 2.30 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.10 0.87 7.64 -51.93 -0.40 0.47 16 36 H 0.41 2.89 7.19 -34.47 -0.25 2.64 16 37 H 0.13 1.64 8.14 -51.92 -0.42 1.21 16 38 H 0.13 1.69 8.14 -51.92 -0.42 1.27 16 39 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.10 0.95 8.06 -51.93 -0.42 0.53 16 45 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 384.69 15.07 5.80 5.80 Total: -1.00 -36.10 384.69 -9.51 -45.61 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -7.01 Total: 0.69 kcal Atomic # 6 Polarization: -23.99 SS G_CDS: -0.48 Total: -24.47 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: 0.67 Total: -36.30 kcal Atomic # 8 Polarization: -39.83 SS G_CDS: -2.88 Total: -42.71 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: 35.47 SS G_CDS: -0.59 Total: 34.88 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.10 -9.51 -45.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000443993303.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.568 kcal (2) G-P(sol) polarization free energy of solvation -36.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds