Wall clock time and date at job start Fri Apr 10 2020 18:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.51039 * 2 1 4 4 C 1.52874 * 109.62837 * 240.00528 * 2 1 3 5 5 N 1.47153 * 108.60944 * 187.89773 * 4 2 1 6 6 S 1.65599 * 120.98277 * 230.50243 * 5 4 2 7 7 O 1.42105 * 104.27655 * 153.64494 * 6 5 4 8 8 O 1.42101 * 104.27764 * 25.78931 * 6 5 4 9 9 C 1.81395 * 104.44748 * 269.71800 * 6 5 4 10 10 C 1.52999 * 109.46986 * 180.02562 * 9 6 5 11 11 C 1.53002 * 109.47371 * 299.99973 * 10 9 6 12 12 C 1.53002 * 109.47538 * 59.99873 * 10 9 6 13 13 C 1.50700 * 109.47535 * 180.02562 * 10 9 6 14 14 H 1.08006 * 119.99840 * 359.97438 * 13 10 9 15 15 C 1.37873 * 120.00463 * 180.02562 * 13 10 9 16 16 N 1.31518 * 120.00062 * 359.97438 * 15 13 10 17 17 Si 1.86797 * 120.00103 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.47443 * 59.99483 * 17 15 13 19 19 H 1.48505 * 109.47343 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47001 * 299.99442 * 17 15 13 21 21 C 1.47150 * 118.03481 * 50.22538 * 5 4 2 22 22 C 1.53295 * 108.38850 * 309.72079 * 21 5 4 23 23 H 1.09000 * 109.51036 * 292.37874 * 22 21 5 24 24 C 1.52999 * 109.51600 * 172.22289 * 22 21 5 25 25 O 1.42903 * 109.47007 * 174.99654 * 24 22 21 26 26 O 1.42966 * 109.50740 * 120.09744 * 2 1 3 27 27 H 1.08997 * 109.47339 * 299.90413 * 1 2 3 28 28 H 1.09004 * 109.46623 * 59.89917 * 1 2 3 29 29 H 1.08997 * 109.47151 * 179.89377 * 1 2 3 30 30 H 1.09001 * 109.61762 * 68.07728 * 4 2 1 31 31 H 1.08998 * 109.52496 * 307.66381 * 4 2 1 32 32 H 1.09003 * 109.47393 * 299.99669 * 9 6 5 33 33 H 1.08994 * 109.47678 * 60.00285 * 9 6 5 34 34 H 1.09003 * 109.46921 * 59.99370 * 11 10 9 35 35 H 1.08991 * 109.47533 * 180.02562 * 11 10 9 36 36 H 1.09005 * 109.46766 * 300.00134 * 11 10 9 37 37 H 1.09004 * 109.47056 * 59.99837 * 12 10 9 38 38 H 1.08995 * 109.47291 * 180.02562 * 12 10 9 39 39 H 1.08996 * 109.46772 * 300.00176 * 12 10 9 40 40 H 0.96996 * 119.99792 * 180.02562 * 16 15 13 41 41 H 1.09003 * 109.67878 * 69.43819 * 21 5 4 42 42 H 1.08995 * 109.68465 * 189.99105 * 21 5 4 43 43 H 1.08992 * 109.47007 * 294.99956 * 24 22 21 44 44 H 1.08999 * 109.46615 * 54.99874 * 24 22 21 45 45 H 0.96695 * 113.99790 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0435 -0.7198 -1.2471 5 7 3.5024 -0.8749 -1.1325 6 16 4.5079 -0.4163 -2.3657 7 8 5.7383 -0.1160 -1.7213 8 8 3.7787 0.5884 -3.0572 9 6 4.6729 -1.9030 -3.3917 10 6 5.5905 -1.6041 -4.5790 11 6 4.9906 -0.4716 -5.4148 12 6 6.9689 -1.1835 -4.0651 13 6 5.7272 -2.8390 -5.4318 14 1 5.2115 -3.7465 -5.1545 15 6 6.5114 -2.8106 -6.5655 16 7 7.1398 -1.7057 -6.9029 17 14 6.6813 -4.3416 -7.6222 18 1 5.3436 -4.7495 -8.1214 19 1 7.5719 -4.0514 -8.7746 20 1 7.2633 -5.4408 -6.8109 21 6 4.0417 -1.4439 0.1129 22 6 3.4311 -0.6838 1.2959 23 1 3.8021 0.3411 1.3006 24 6 3.8210 -1.3756 2.6037 25 8 3.3503 -0.6029 3.7099 26 8 2.0074 -0.6758 1.1659 27 1 -0.3634 0.5123 0.8908 28 1 -0.3633 0.5154 -0.8891 29 1 -0.3633 -1.0276 -0.0019 30 1 1.8054 -0.1316 -2.1333 31 1 1.5747 -1.7011 -1.3203 32 1 5.1008 -2.7097 -2.7965 33 1 3.6910 -2.2029 -3.7576 34 1 4.8913 0.4218 -4.7981 35 1 5.6440 -0.2589 -6.2608 36 1 4.0086 -0.7712 -5.7809 37 1 7.3964 -1.9903 -3.4696 38 1 7.6225 -0.9700 -4.9108 39 1 6.8697 -0.2901 -3.4485 40 1 7.6912 -1.6857 -7.7007 41 1 3.7774 -2.4993 0.1789 42 1 5.1261 -1.3349 0.1268 43 1 3.3728 -2.3685 2.6372 44 1 4.9059 -1.4646 2.6582 45 1 3.5627 -0.9825 4.5735 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451446092.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:39 Heat of formation + Delta-G solvation = -189.387204 kcal Electronic energy + Delta-G solvation = -27250.357140 eV Core-core repulsion = 23394.379780 eV Total energy + Delta-G solvation = -3855.977360 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.66331 -38.28062 -38.15742 -37.61738 -36.98001 -35.85278 -34.14710 -33.64532 -30.53977 -28.40639 -27.71687 -27.60169 -27.26316 -25.69978 -22.96844 -21.97886 -21.33263 -19.90389 -18.97973 -18.38865 -17.95336 -17.91324 -17.21174 -16.99013 -16.75647 -16.30030 -16.01957 -15.66088 -15.39474 -15.00236 -14.72978 -14.68219 -14.44835 -13.96370 -13.79000 -13.69818 -13.55991 -13.30775 -13.15011 -12.97111 -12.90955 -12.81309 -12.72877 -12.50447 -12.48227 -12.18174 -12.17713 -12.01205 -12.00175 -11.58845 -11.58782 -11.35750 -11.22265 -10.92550 -10.65848 -10.42202 -9.83243 -8.04011 -6.23062 -0.74641 1.45415 1.45853 1.53044 1.63563 2.43701 2.57773 2.82640 3.02374 3.18509 3.29754 3.54778 3.78245 3.92859 4.01022 4.03263 4.11939 4.19932 4.27470 4.33498 4.39684 4.55325 4.56879 4.57418 4.70464 4.80643 4.83901 4.84919 4.88863 4.95025 4.96967 5.04733 5.09612 5.27918 5.36035 5.40720 5.50422 5.63199 5.95270 6.09390 6.15339 6.32278 6.81432 6.94404 7.45490 8.95675 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.022386 B = 0.003591 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.469585 B = 7796.070761 C = 8072.481964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.072 3.928 3 H 0.047 0.953 4 C 0.079 3.921 5 N -1.006 6.006 6 S 2.607 3.393 7 O -0.984 6.984 8 O -0.985 6.985 9 C -0.581 4.581 10 C 0.068 3.932 11 C -0.159 4.159 12 C -0.159 4.159 13 C -0.519 4.519 14 H 0.064 0.936 15 C 0.018 3.982 16 N -0.908 5.908 17 Si 0.955 3.045 18 H -0.272 1.272 19 H -0.288 1.288 20 H -0.271 1.271 21 C 0.084 3.916 22 C 0.076 3.924 23 H 0.048 0.952 24 C 0.088 3.912 25 O -0.590 6.590 26 O -0.373 6.373 27 H 0.068 0.932 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.138 0.862 33 H 0.136 0.864 34 H 0.031 0.969 35 H 0.071 0.929 36 H 0.040 0.960 37 H 0.041 0.959 38 H 0.070 0.930 39 H 0.031 0.969 40 H 0.262 0.738 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.074 0.926 44 H 0.087 0.913 45 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.334 -1.991 17.325 20.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.012 3.988 3 H 0.065 0.935 4 C -0.045 4.045 5 N -0.844 5.844 6 S 2.707 3.293 7 O -0.975 6.975 8 O -0.975 6.975 9 C -0.714 4.714 10 C 0.066 3.934 11 C -0.217 4.217 12 C -0.217 4.217 13 C -0.558 4.558 14 H 0.082 0.918 15 C -0.181 4.181 16 N -0.547 5.547 17 Si 0.781 3.219 18 H -0.197 1.197 19 H -0.214 1.214 20 H -0.196 1.196 21 C -0.041 4.041 22 C 0.016 3.984 23 H 0.066 0.934 24 C 0.009 3.991 25 O -0.399 6.399 26 O -0.293 6.293 27 H 0.087 0.913 28 H 0.108 0.892 29 H 0.095 0.905 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.156 0.844 33 H 0.154 0.846 34 H 0.050 0.950 35 H 0.090 0.910 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.089 0.911 39 H 0.050 0.950 40 H 0.071 0.929 41 H 0.124 0.876 42 H 0.124 0.876 43 H 0.092 0.908 44 H 0.104 0.896 45 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -10.176 -0.743 16.755 19.617 hybrid contribution 0.711 -1.272 -0.807 1.666 sum -9.464 -2.015 15.948 18.654 Atomic orbital electron populations 1.21738 0.89981 1.04083 1.03690 1.22461 0.97115 0.94619 0.84564 0.93493 1.22357 0.78560 1.03383 1.00248 1.57783 1.17287 1.80312 1.29055 1.05046 0.72801 0.77540 0.73896 1.93488 1.45302 1.84208 1.74457 1.93488 1.72725 1.56593 1.74696 1.30474 1.09951 1.19120 1.11817 1.17946 0.90145 0.95545 0.89763 1.22203 1.00335 0.96734 1.02436 1.22198 1.00532 0.98498 1.00449 1.21255 1.29309 0.96755 1.08451 0.91819 1.25679 0.95140 0.98705 0.98607 1.69937 1.31182 1.27723 1.25820 0.85664 0.78036 0.80041 0.78197 1.19691 1.21367 1.19618 1.22217 1.00184 0.99360 0.82360 1.22492 0.82106 0.99211 0.94583 0.93380 1.22144 0.99144 0.94114 0.83666 1.86472 1.82380 1.53046 1.17961 1.87964 1.20427 1.77404 1.43465 0.91309 0.89205 0.90549 0.88051 0.88162 0.84427 0.84565 0.95040 0.91039 0.94060 0.93953 0.91069 0.95018 0.92894 0.87594 0.87632 0.90762 0.89552 0.74929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.57 71.98 0.69 -1.57 16 2 C 0.07 1.64 3.38 30.55 0.10 1.74 16 3 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 4 C 0.08 1.87 5.94 86.21 0.51 2.38 16 5 N -1.01 -27.63 3.28 -512.38 -1.68 -29.31 16 6 S 2.61 94.36 4.51 -56.49 -0.25 94.11 16 7 O -0.98 -40.05 14.24 -127.65 -1.82 -41.87 16 8 O -0.98 -40.42 14.23 -127.65 -1.82 -42.24 16 9 C -0.58 -21.54 5.12 71.98 0.37 -21.17 16 10 C 0.07 3.25 0.52 -52.93 -0.03 3.22 16 11 C -0.16 -7.85 7.77 71.98 0.56 -7.29 16 12 C -0.16 -7.80 7.78 71.98 0.56 -7.24 16 13 C -0.52 -26.62 8.01 25.60 0.21 -26.41 16 14 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 15 C 0.02 0.95 5.15 84.65 0.44 1.39 16 16 N -0.91 -49.91 9.35 21.45 0.20 -49.71 16 17 Si 0.95 41.55 29.54 68.60 2.03 43.57 16 18 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 19 H -0.29 -12.51 7.11 99.48 0.71 -11.81 16 20 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 21 C 0.08 1.91 5.96 86.35 0.51 2.42 16 22 C 0.08 1.75 3.06 30.69 0.09 1.84 16 23 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 24 C 0.09 1.43 6.71 71.98 0.48 1.92 16 25 O -0.59 -10.77 13.63 -144.70 -1.97 -12.74 16 26 O -0.37 -9.19 10.00 -144.70 -1.45 -10.64 16 27 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 29 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.10 2.46 6.87 -2.39 -0.02 2.45 16 31 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.14 4.49 8.14 -2.39 -0.02 4.48 16 33 H 0.14 4.50 8.14 -2.39 -0.02 4.48 16 34 H 0.03 1.48 5.46 -2.39 -0.01 1.47 16 35 H 0.07 3.86 6.07 -2.39 -0.01 3.84 16 36 H 0.04 1.92 8.14 -2.38 -0.02 1.90 16 37 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.07 3.83 6.07 -2.39 -0.01 3.81 16 39 H 0.03 1.48 5.46 -2.39 -0.01 1.47 16 40 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 41 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.11 2.42 6.88 -2.39 -0.02 2.40 16 43 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.40 3.02 9.12 -74.06 -0.68 2.35 16 Total: -1.00 -70.82 356.88 -1.95 -72.77 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: 0.31 Total: 24.82 kcal Atomic # 6 Polarization: -53.27 SS G_CDS: 4.50 Total: -48.77 kcal Atomic # 7 Polarization: -77.54 SS G_CDS: -1.48 Total: -79.02 kcal Atomic # 8 Polarization: -100.43 SS G_CDS: -7.05 Total: -107.49 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.57 kcal Atomic # 16 Polarization: 94.36 SS G_CDS: -0.25 Total: 94.11 kcal Total: -70.82 -1.95 -72.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451446092.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.616 kcal (2) G-P(sol) polarization free energy of solvation -70.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds