Wall clock time and date at job start Fri Apr 10 2020 18:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.50736 * 2 1 4 4 C 1.52871 * 109.37148 * 120.14484 * 2 1 3 5 5 N 1.47152 * 108.60607 * 67.82037 * 4 2 1 6 6 S 1.65607 * 120.98369 * 230.50336 * 5 4 2 7 7 O 1.42096 * 104.27984 * 153.64467 * 6 5 4 8 8 O 1.42099 * 104.27334 * 25.78532 * 6 5 4 9 9 C 1.81402 * 104.44565 * 269.71709 * 6 5 4 10 10 C 1.53005 * 109.46819 * 179.97438 * 9 6 5 11 11 C 1.52998 * 109.47088 * 59.99849 * 10 9 6 12 12 C 1.53002 * 109.47199 * 299.99907 * 10 9 6 13 13 C 1.50699 * 109.46928 * 180.02562 * 10 9 6 14 14 H 1.08002 * 120.00309 * 359.91735 * 13 10 9 15 15 C 1.37882 * 119.99711 * 179.97438 * 13 10 9 16 16 N 1.31507 * 120.00006 * 1.83416 * 15 13 10 17 17 Si 1.86808 * 119.99714 * 181.83799 * 15 13 10 18 18 H 1.48499 * 109.46590 * 179.97438 * 17 15 13 19 19 H 1.48499 * 109.46923 * 299.99637 * 17 15 13 20 20 H 1.48489 * 109.46925 * 59.99829 * 17 15 13 21 21 C 1.47150 * 118.03660 * 50.22473 * 5 4 2 22 22 C 1.53289 * 108.38816 * 309.71905 * 21 5 4 23 23 H 1.09001 * 109.51441 * 292.37839 * 22 21 5 24 24 C 1.53001 * 109.51533 * 172.22261 * 22 21 5 25 25 O 1.42898 * 109.47007 * 175.00137 * 24 22 21 26 26 O 1.42963 * 109.22192 * 52.29759 * 22 21 5 27 27 H 1.09007 * 109.46581 * 180.10312 * 1 2 3 28 28 H 1.09000 * 109.47432 * 300.09811 * 1 2 3 29 29 H 1.09000 * 109.47683 * 60.10604 * 1 2 3 30 30 H 1.09005 * 109.62117 * 308.00375 * 4 2 1 31 31 H 1.08995 * 109.52969 * 187.58170 * 4 2 1 32 32 H 1.08998 * 109.47313 * 60.00323 * 9 6 5 33 33 H 1.09000 * 109.47195 * 299.99807 * 9 6 5 34 34 H 1.09001 * 109.47193 * 171.65120 * 11 10 9 35 35 H 1.08997 * 109.47250 * 291.65117 * 11 10 9 36 36 H 1.08999 * 109.47201 * 51.65426 * 11 10 9 37 37 H 1.09000 * 109.46752 * 308.63600 * 12 10 9 38 38 H 1.09002 * 109.47154 * 68.63703 * 12 10 9 39 39 H 1.08996 * 109.47180 * 188.63909 * 12 10 9 40 40 H 0.96997 * 120.00688 * 356.07780 * 16 15 13 41 41 H 1.09003 * 109.68055 * 69.44362 * 21 5 4 42 42 H 1.08996 * 109.68539 * 189.99113 * 21 5 4 43 43 H 1.08996 * 109.46806 * 294.99945 * 24 22 21 44 44 H 1.08993 * 109.47079 * 55.00320 * 24 22 21 45 45 H 0.96695 * 114.00053 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0371 -0.7242 1.2471 5 7 1.6961 -2.1511 1.1326 6 16 0.9280 -2.9458 2.3660 7 8 0.2340 -4.0053 1.7218 8 8 0.2246 -1.9228 3.0573 9 6 2.2744 -3.5977 3.3921 10 6 1.6861 -4.3617 4.5801 11 6 0.8286 -5.5204 4.0672 12 6 0.8197 -3.4169 5.4154 13 6 2.8045 -4.9028 5.4329 14 1 3.8322 -4.7212 5.1546 15 6 2.5159 -5.6306 6.5678 16 7 1.2653 -5.8834 6.8864 17 14 3.9013 -6.2576 7.6528 18 1 3.3304 -7.0053 8.8017 19 1 4.7798 -7.1576 6.8631 20 1 4.6948 -5.1078 8.1560 21 6 2.0523 -2.8496 -0.1126 22 6 1.5397 -2.0205 -1.2957 23 1 0.4497 -2.0278 -1.3004 24 6 2.0615 -2.6190 -2.6035 25 8 1.4905 -1.9175 -3.7097 26 8 2.0075 -0.6758 -1.1658 27 1 -0.3633 -1.0278 0.0018 28 1 -0.3634 0.5153 0.8891 29 1 -0.3634 0.5122 -0.8909 30 1 1.5621 -0.3033 2.1334 31 1 3.1185 -0.6100 1.3204 32 1 2.8849 -2.7722 3.7579 33 1 2.8918 -4.2704 2.7968 34 1 0.5314 -6.1510 4.9050 35 1 -0.0608 -5.1249 3.5767 36 1 1.4045 -6.1108 3.3545 37 1 1.3876 -2.5171 5.6521 38 1 -0.0717 -3.1458 4.8498 39 1 0.5262 -3.9148 6.3395 40 1 0.5445 -5.5103 6.3554 41 1 3.1354 -2.9530 -0.1786 42 1 1.5875 -3.8354 -0.1265 43 1 3.1472 -2.5281 -2.6369 44 1 1.7832 -3.6714 -2.6579 45 1 1.7773 -2.2445 -4.5732 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451446095.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:51 Heat of formation + Delta-G solvation = -181.288653 kcal Electronic energy + Delta-G solvation = -27583.966555 eV Core-core repulsion = 23728.340374 eV Total energy + Delta-G solvation = -3855.626181 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.89037 -38.74330 -38.33760 -37.62414 -37.06356 -35.85225 -33.79196 -33.53867 -30.66781 -28.59656 -28.04506 -27.71996 -26.96368 -25.93233 -23.69028 -21.45117 -21.12328 -19.92946 -19.29372 -18.63657 -18.42266 -17.83491 -17.27329 -17.12850 -16.46656 -16.01316 -15.67904 -15.63394 -15.58302 -15.30150 -14.96985 -14.91156 -14.58504 -14.31821 -13.97618 -13.65262 -13.63516 -13.45680 -13.26491 -13.03546 -12.98608 -12.83923 -12.67699 -12.53017 -12.40741 -12.32624 -12.18941 -12.00869 -11.88350 -11.84563 -11.79145 -11.37630 -11.26916 -10.90015 -10.45817 -10.37725 -9.82044 -8.42328 -6.31572 -0.82100 1.56658 1.57626 1.62864 1.81738 2.59073 2.64248 2.75437 2.99233 3.20470 3.26918 3.48175 3.74929 3.83437 3.93411 3.95534 4.04902 4.16578 4.24130 4.27874 4.28546 4.38175 4.50784 4.55037 4.56127 4.58998 4.66075 4.69630 4.73404 4.78165 4.83157 4.88677 5.03991 5.06717 5.10931 5.16049 5.41482 5.49368 5.57812 6.04994 6.13845 6.22945 6.64731 6.93199 7.47934 8.83152 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.024687 B = 0.003675 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.947639 B = 7617.296791 C = 7893.174081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.078 3.922 3 H 0.143 0.857 4 C 0.078 3.922 5 N -1.001 6.001 6 S 2.609 3.391 7 O -0.985 6.985 8 O -0.980 6.980 9 C -0.579 4.579 10 C 0.051 3.949 11 C -0.171 4.171 12 C -0.169 4.169 13 C -0.591 4.591 14 H 0.057 0.943 15 C -0.024 4.024 16 N -0.942 5.942 17 Si 1.109 2.891 18 H -0.289 1.289 19 H -0.272 1.272 20 H -0.272 1.272 21 C 0.084 3.916 22 C 0.073 3.927 23 H 0.055 0.945 24 C 0.086 3.914 25 O -0.589 6.589 26 O -0.370 6.370 27 H 0.036 0.964 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.061 0.939 35 H 0.036 0.964 36 H 0.052 0.948 37 H 0.054 0.946 38 H 0.038 0.962 39 H 0.058 0.942 40 H 0.275 0.725 41 H 0.105 0.895 42 H 0.102 0.898 43 H 0.073 0.927 44 H 0.084 0.916 45 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.077 9.440 -18.065 21.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.019 3.981 3 H 0.160 0.840 4 C -0.047 4.047 5 N -0.840 5.840 6 S 2.708 3.292 7 O -0.975 6.975 8 O -0.971 6.971 9 C -0.711 4.711 10 C 0.049 3.951 11 C -0.229 4.229 12 C -0.227 4.227 13 C -0.630 4.630 14 H 0.075 0.925 15 C -0.223 4.223 16 N -0.583 5.583 17 Si 0.932 3.068 18 H -0.215 1.215 19 H -0.197 1.197 20 H -0.197 1.197 21 C -0.041 4.041 22 C 0.013 3.987 23 H 0.073 0.927 24 C 0.008 3.992 25 O -0.397 6.397 26 O -0.289 6.289 27 H 0.055 0.945 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.154 0.846 33 H 0.154 0.846 34 H 0.080 0.920 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.056 0.944 39 H 0.077 0.923 40 H 0.091 0.909 41 H 0.123 0.877 42 H 0.120 0.880 43 H 0.091 0.909 44 H 0.102 0.898 45 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 4.264 8.909 -16.302 19.061 hybrid contribution -0.064 0.204 -1.143 1.163 sum 4.200 9.113 -17.445 20.125 Atomic orbital electron populations 1.22428 0.96832 1.01687 1.03496 1.22593 0.93589 0.97555 0.84332 0.84008 1.22378 1.02904 0.78968 1.00473 1.57684 1.78209 1.19370 1.28745 1.04964 0.76710 0.73521 0.73981 1.93497 1.71538 1.58089 1.74403 1.93502 1.70993 1.57706 1.74852 1.30442 1.17692 1.11552 1.11380 1.18114 0.94621 0.91446 0.90889 1.22401 0.98603 1.01040 1.00869 1.22378 0.98618 0.99497 1.02216 1.22066 0.92832 1.37594 1.10475 0.92480 1.27037 1.02231 0.94842 0.98230 1.70932 1.00262 1.43771 1.43352 0.83028 0.72360 0.76668 0.74757 1.21496 1.19696 1.19691 1.22203 1.03044 0.96364 0.82495 1.22470 0.98648 0.83348 0.94229 0.92706 1.22145 0.98125 0.95055 0.83874 1.86469 1.72867 1.62485 1.17917 1.88019 1.72035 1.25175 1.43637 0.94450 0.90537 0.90930 0.88003 0.88051 0.84569 0.84616 0.92031 0.94465 0.92861 0.92699 0.94356 0.92317 0.90921 0.87692 0.87962 0.90865 0.89828 0.74976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.32 8.79 71.98 0.63 -3.69 16 2 C 0.08 1.61 3.92 30.55 0.12 1.73 16 3 H 0.14 2.10 8.14 -2.39 -0.02 2.08 16 4 C 0.08 1.69 6.01 86.21 0.52 2.21 16 5 N -1.00 -26.27 2.80 -512.40 -1.43 -27.70 16 6 S 2.61 91.86 4.51 -56.49 -0.25 91.60 16 7 O -0.98 -39.28 14.42 -127.65 -1.84 -41.12 16 8 O -0.98 -38.66 14.42 -127.65 -1.84 -40.50 16 9 C -0.58 -21.41 5.10 71.98 0.37 -21.04 16 10 C 0.05 2.44 0.52 -52.93 -0.03 2.42 16 11 C -0.17 -8.30 7.36 71.98 0.53 -7.77 16 12 C -0.17 -8.15 7.35 71.98 0.53 -7.62 16 13 C -0.59 -30.87 8.01 25.60 0.21 -30.67 16 14 H 0.06 2.87 7.74 -2.91 -0.02 2.85 16 15 C -0.02 -1.32 5.09 84.66 0.43 -0.89 16 16 N -0.94 -54.81 12.09 21.45 0.26 -54.55 16 17 Si 1.11 47.90 29.90 68.60 2.05 49.95 16 18 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 19 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 20 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 21 C 0.08 1.85 5.96 86.35 0.51 2.36 16 22 C 0.07 1.60 2.67 30.69 0.08 1.69 16 23 H 0.05 1.43 6.25 -2.39 -0.01 1.41 16 24 C 0.09 1.38 6.71 71.98 0.48 1.86 16 25 O -0.59 -10.43 13.63 -144.69 -1.97 -12.40 16 26 O -0.37 -8.52 10.20 -144.69 -1.48 -10.00 16 27 H 0.04 1.02 6.11 -2.38 -0.01 1.01 16 28 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.10 2.31 6.86 -2.38 -0.02 2.29 16 31 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.14 4.52 8.14 -2.39 -0.02 4.50 16 33 H 0.14 4.50 8.14 -2.39 -0.02 4.48 16 34 H 0.06 3.27 5.17 -2.39 -0.01 3.26 16 35 H 0.04 1.71 6.03 -2.39 -0.01 1.70 16 36 H 0.05 2.42 8.13 -2.39 -0.02 2.40 16 37 H 0.05 2.48 8.13 -2.39 -0.02 2.46 16 38 H 0.04 1.75 6.05 -2.39 -0.01 1.74 16 39 H 0.06 3.09 5.28 -2.39 -0.01 3.08 16 40 H 0.28 15.92 3.61 -92.71 -0.33 15.59 16 41 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.10 2.31 6.88 -2.39 -0.02 2.29 16 43 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.40 2.89 9.12 -74.06 -0.68 2.22 16 Total: -1.00 -73.43 349.42 -1.36 -74.79 By element: Atomic # 1 Polarization: 28.59 SS G_CDS: 0.76 Total: 29.35 kcal Atomic # 6 Polarization: -63.80 SS G_CDS: 4.39 Total: -59.41 kcal Atomic # 7 Polarization: -81.08 SS G_CDS: -1.17 Total: -82.25 kcal Atomic # 8 Polarization: -96.90 SS G_CDS: -7.13 Total: -104.03 kcal Atomic # 14 Polarization: 47.90 SS G_CDS: 2.05 Total: 49.95 kcal Atomic # 16 Polarization: 91.86 SS G_CDS: -0.25 Total: 91.60 kcal Total: -73.43 -1.36 -74.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451446095.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.495 kcal (2) G-P(sol) polarization free energy of solvation -73.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds