Wall clock time and date at job start Fri Apr 10 2020 18:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42904 * 109.47511 * 2 1 4 4 C 1.42899 * 114.00223 * 179.97438 * 3 2 1 5 5 H 1.09003 * 110.82993 * 26.35597 * 4 3 2 6 6 C 1.54992 * 110.90852 * 262.70405 * 4 3 2 7 7 O 1.44377 * 103.49322 * 204.77870 * 6 4 3 8 8 C 1.43745 * 106.97321 * 40.06269 * 7 6 4 9 9 C 1.54101 * 107.29208 * 333.48374 * 8 7 6 10 10 H 1.09001 * 110.48767 * 120.70845 * 9 8 7 11 11 N 1.46499 * 110.49132 * 243.35456 * 9 8 7 12 12 S 1.65608 * 119.99919 * 263.54927 * 11 9 8 13 13 O 1.42101 * 104.27604 * 181.06880 * 12 11 9 14 14 O 1.42100 * 104.27723 * 308.92613 * 12 11 9 15 15 C 1.81398 * 104.44819 * 64.99955 * 12 11 9 16 16 C 1.53004 * 109.47076 * 179.97438 * 15 12 11 17 17 C 1.52997 * 109.47042 * 299.99965 * 16 15 12 18 18 C 1.52993 * 109.47029 * 59.99925 * 16 15 12 19 19 C 1.50705 * 109.47093 * 180.02562 * 16 15 12 20 20 H 1.07994 * 120.00052 * 357.69370 * 19 16 15 21 21 C 1.37875 * 119.99837 * 177.69435 * 19 16 15 22 22 N 1.31515 * 119.99871 * 6.58043 * 21 19 16 23 23 Si 1.86801 * 120.00090 * 186.57794 * 21 19 16 24 24 H 1.48500 * 109.46791 * 84.99469 * 23 21 19 25 25 H 1.48493 * 109.46966 * 204.99662 * 23 21 19 26 26 H 1.48502 * 109.46749 * 324.99771 * 23 21 19 27 27 H 1.08998 * 109.47149 * 59.99663 * 1 2 3 28 28 H 1.08999 * 109.47387 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47058 * 300.00170 * 1 2 3 30 30 H 1.09002 * 109.47548 * 239.99810 * 2 1 3 31 31 H 1.09004 * 109.47460 * 120.00031 * 2 1 3 32 32 H 1.09001 * 110.61820 * 323.28372 * 6 4 3 33 33 H 1.09007 * 110.61943 * 86.27685 * 6 4 3 34 34 H 1.08999 * 109.87996 * 214.06631 * 8 7 6 35 35 H 1.08998 * 109.88388 * 92.90996 * 8 7 6 36 36 H 0.96997 * 120.00085 * 83.54331 * 11 9 8 37 37 H 1.09001 * 109.47151 * 299.99514 * 15 12 11 38 38 H 1.09004 * 109.47115 * 59.99950 * 15 12 11 39 39 H 1.09002 * 109.47636 * 66.66821 * 17 16 15 40 40 H 1.08996 * 109.47213 * 186.66717 * 17 16 15 41 41 H 1.09000 * 109.47328 * 306.66984 * 17 16 15 42 42 H 1.09001 * 109.47383 * 60.00242 * 18 16 15 43 43 H 1.08999 * 109.47258 * 180.02562 * 18 16 15 44 44 H 1.09002 * 109.47285 * 300.00064 * 18 16 15 45 45 H 0.97007 * 119.99758 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8896 0.5806 -0.4514 6 6 3.9672 1.6872 1.4369 7 8 5.2295 2.3547 1.2235 8 6 5.0331 3.2907 0.1504 9 6 3.8831 2.7521 -0.7225 10 1 3.0659 3.4721 -0.7637 11 7 4.3644 2.4432 -2.0713 12 16 4.1803 3.5496 -3.2897 13 8 4.7292 2.9072 -4.4322 14 8 2.8048 3.9025 -3.2377 15 6 5.2166 4.9514 -2.7884 16 6 5.1306 6.0533 -3.8465 17 6 5.6224 5.5101 -5.1896 18 6 3.6788 6.5159 -3.9842 19 6 5.9921 7.2177 -3.4304 20 1 6.5161 7.1916 -2.4864 21 6 6.1112 8.3164 -4.2548 22 7 5.3749 8.4065 -5.3407 23 14 7.3185 9.6769 -3.8293 24 1 8.6654 9.3222 -4.3443 25 1 6.8700 10.9488 -4.4508 26 1 7.3797 9.8410 -2.3547 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.2877 2.3233 2.0042 33 1 4.1178 0.7349 1.9456 34 1 5.9435 3.3698 -0.4437 35 1 4.7658 4.2671 0.5544 36 1 4.7909 1.5907 -2.2506 37 1 4.8665 5.3382 -1.8314 38 1 6.2511 4.6220 -2.6908 39 1 4.9312 4.7472 -5.5481 40 1 5.6734 6.3232 -5.9137 41 1 6.6128 5.0728 -5.0640 42 1 3.3284 6.9029 -3.0273 43 1 3.6174 7.3005 -4.7383 44 1 3.0560 5.6735 -4.2854 45 1 5.4584 9.1797 -5.9206 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452036295.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:58 Heat of formation + Delta-G solvation = -163.119817 kcal Electronic energy + Delta-G solvation = -27036.653373 eV Core-core repulsion = 23181.815053 eV Total energy + Delta-G solvation = -3854.838321 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.12332 -37.58569 -36.58006 -36.30557 -35.37448 -34.84024 -31.78487 -31.70154 -29.18942 -28.42228 -26.69805 -25.74063 -25.24191 -23.38995 -22.75296 -21.63513 -19.67732 -18.97721 -17.79239 -17.19140 -16.90951 -16.26724 -15.93682 -15.70054 -15.36344 -15.13954 -15.03478 -14.77307 -14.34178 -13.88344 -13.37049 -13.10713 -13.05552 -12.95548 -12.58129 -12.53767 -12.20751 -12.04178 -12.02946 -11.63067 -11.49827 -11.47627 -11.18264 -11.10011 -11.04777 -10.95976 -10.74050 -10.40763 -10.33093 -10.17046 -10.16255 -10.00526 -9.68289 -9.58218 -9.21808 -8.73302 -8.39515 -6.05634 -4.17272 0.78270 2.99989 3.17326 3.25680 3.32807 3.34267 3.85736 4.09601 4.24212 4.36572 4.46624 4.61115 4.72083 4.78155 4.80706 4.97578 5.01310 5.07275 5.15231 5.19926 5.35803 5.39988 5.46741 5.60222 5.63827 5.64697 5.66262 5.87701 5.93673 6.32933 6.46946 6.65879 6.76130 6.88353 6.90975 6.95550 7.03903 7.29119 7.46438 7.66134 7.95676 8.07793 8.31378 8.81096 9.48103 10.95494 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.019853 B = 0.003727 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.024763 B = 7510.873551 C = 8188.633231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.055 3.945 3 O -0.366 6.366 4 C 0.055 3.945 5 H 0.087 0.913 6 C 0.028 3.972 7 O -0.367 6.367 8 C 0.025 3.975 9 C 0.115 3.885 10 H 0.122 0.878 11 N -1.119 6.119 12 S 2.589 3.411 13 O -0.962 6.962 14 O -0.958 6.958 15 C -0.583 4.583 16 C 0.083 3.917 17 C -0.161 4.161 18 C -0.164 4.164 19 C -0.503 4.503 20 H 0.060 0.940 21 C 0.065 3.935 22 N -0.882 5.882 23 Si 0.895 3.105 24 H -0.279 1.279 25 H -0.286 1.286 26 H -0.275 1.275 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.078 0.922 36 H 0.412 0.588 37 H 0.117 0.883 38 H 0.121 0.879 39 H 0.025 0.975 40 H 0.094 0.906 41 H 0.035 0.965 42 H 0.036 0.964 43 H 0.098 0.902 44 H 0.027 0.973 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.445 -15.343 11.983 19.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.022 4.022 3 O -0.285 6.285 4 C -0.005 4.005 5 H 0.105 0.895 6 C -0.050 4.050 7 O -0.286 6.286 8 C -0.054 4.054 9 C 0.006 3.994 10 H 0.140 0.860 11 N -0.875 5.875 12 S 2.687 3.313 13 O -0.953 6.953 14 O -0.948 6.948 15 C -0.716 4.716 16 C 0.081 3.919 17 C -0.219 4.219 18 C -0.222 4.222 19 C -0.542 4.542 20 H 0.078 0.922 21 C -0.137 4.137 22 N -0.520 5.520 23 Si 0.723 3.277 24 H -0.205 1.205 25 H -0.212 1.212 26 H -0.200 1.200 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.115 0.885 34 H 0.119 0.881 35 H 0.097 0.903 36 H 0.245 0.755 37 H 0.136 0.864 38 H 0.139 0.861 39 H 0.044 0.956 40 H 0.113 0.887 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.116 0.884 44 H 0.045 0.955 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.079 -15.079 11.198 19.457 hybrid contribution 1.301 0.447 0.514 1.468 sum -3.778 -14.632 11.713 19.120 Atomic orbital electron populations 1.21755 0.93407 1.02303 1.03551 1.22594 0.95997 0.83452 1.00141 1.87984 1.18992 1.26752 1.94741 1.23879 0.82632 0.98275 0.95710 0.89523 1.23973 0.86394 0.98465 0.96176 1.88927 1.30566 1.55320 1.53771 1.23927 0.99515 0.93329 0.88633 1.22160 0.96733 0.97861 0.82652 0.86011 1.55981 1.76294 1.32871 1.22320 1.05808 0.76403 0.75847 0.73207 1.93566 1.80850 1.74152 1.46696 1.93560 1.31672 1.83876 1.85689 1.30603 1.13706 1.16141 1.11195 1.17930 0.95158 0.90321 0.88535 1.22214 0.98683 1.00510 1.00481 1.22312 0.95051 1.02182 1.02651 1.20926 1.28134 1.00327 1.04858 0.92215 1.24936 0.95662 0.97955 0.95149 1.69814 1.38376 1.29869 1.13926 0.86558 0.81414 0.81146 0.78568 1.20549 1.21210 1.19976 0.91428 0.91049 0.91729 0.93066 0.93272 0.90603 0.88481 0.88085 0.90341 0.75469 0.86430 0.86091 0.95566 0.88705 0.94545 0.94455 0.88388 0.95467 0.92694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 10.28 37.16 0.38 -0.80 16 2 C 0.05 0.47 6.49 37.16 0.24 0.71 16 3 O -0.37 -4.21 10.11 -35.23 -0.36 -4.57 16 4 C 0.06 0.58 3.34 -24.73 -0.08 0.50 16 5 H 0.09 0.78 7.51 -51.93 -0.39 0.39 16 6 C 0.03 0.26 7.45 38.21 0.28 0.54 16 7 O -0.37 -4.28 11.52 -35.23 -0.41 -4.68 16 8 C 0.02 0.28 7.20 37.73 0.27 0.55 16 9 C 0.11 1.41 3.37 -66.40 -0.22 1.19 16 10 H 0.12 1.63 7.50 -51.93 -0.39 1.24 16 11 N -1.12 -14.96 5.35 -3.59 -0.02 -14.98 16 12 S 2.59 47.05 4.48 -107.50 -0.48 46.56 16 13 O -0.96 -19.88 15.84 -57.54 -0.91 -20.79 16 14 O -0.96 -20.04 15.05 -57.54 -0.87 -20.91 16 15 C -0.58 -10.95 4.91 37.16 0.18 -10.77 16 16 C 0.08 1.97 0.52 -155.66 -0.08 1.89 16 17 C -0.16 -3.92 7.58 37.16 0.28 -3.64 16 18 C -0.16 -4.00 7.80 37.15 0.29 -3.71 16 19 C -0.50 -12.98 8.01 -34.44 -0.28 -13.25 16 20 H 0.06 1.49 7.75 -52.49 -0.41 1.09 16 21 C 0.07 1.71 5.09 -17.82 -0.09 1.62 16 22 N -0.88 -23.86 9.39 55.43 0.52 -23.34 16 23 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.42 8.12 -51.93 -0.42 0.00 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.10 1.11 7.93 -51.93 -0.41 0.69 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.41 4.58 8.58 -34.48 -0.30 4.28 16 37 H 0.12 1.96 7.94 -51.92 -0.41 1.55 16 38 H 0.12 2.03 8.14 -51.92 -0.42 1.61 16 39 H 0.03 0.61 5.96 -51.93 -0.31 0.30 16 40 H 0.09 2.49 5.99 -51.93 -0.31 2.18 16 41 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.10 2.59 6.02 -51.93 -0.31 2.27 16 44 H 0.03 0.63 5.47 -51.93 -0.28 0.35 16 45 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 363.12 15.07 5.47 5.47 Total: -1.00 -32.35 363.12 -8.20 -40.55 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -7.31 Total: 6.44 kcal Atomic # 6 Polarization: -26.36 SS G_CDS: 1.18 Total: -25.18 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.50 Total: -38.32 kcal Atomic # 8 Polarization: -48.41 SS G_CDS: -2.54 Total: -50.95 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 16 Polarization: 47.05 SS G_CDS: -0.48 Total: 46.56 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.35 -8.20 -40.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452036295.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.571 kcal (2) G-P(sol) polarization free energy of solvation -32.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds