Wall clock time and date at job start Fri Apr 10 2020 18:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42904 * 109.47511 * 2 1 4 4 C 1.42899 * 114.00223 * 179.97438 * 3 2 1 5 5 H 1.09003 * 110.82993 * 26.35597 * 4 3 2 6 6 C 1.54992 * 110.90852 * 262.70405 * 4 3 2 7 7 O 1.44377 * 103.49322 * 204.77870 * 6 4 3 8 8 C 1.43745 * 106.97321 * 40.06269 * 7 6 4 9 9 C 1.54101 * 107.29208 * 333.48374 * 8 7 6 10 10 H 1.09001 * 110.48767 * 120.70845 * 9 8 7 11 11 N 1.46499 * 110.49132 * 243.35456 * 9 8 7 12 12 S 1.65608 * 119.99919 * 263.54927 * 11 9 8 13 13 O 1.42101 * 104.27604 * 181.06880 * 12 11 9 14 14 O 1.42100 * 104.27723 * 308.92613 * 12 11 9 15 15 C 1.81398 * 104.44819 * 64.99955 * 12 11 9 16 16 C 1.53004 * 109.47076 * 179.97438 * 15 12 11 17 17 C 1.52997 * 109.47042 * 299.99965 * 16 15 12 18 18 C 1.52993 * 109.47029 * 59.99925 * 16 15 12 19 19 C 1.50705 * 109.47093 * 180.02562 * 16 15 12 20 20 H 1.07994 * 120.00052 * 357.69370 * 19 16 15 21 21 C 1.37875 * 119.99837 * 177.69435 * 19 16 15 22 22 N 1.31515 * 119.99871 * 6.58043 * 21 19 16 23 23 Si 1.86801 * 120.00090 * 186.57794 * 21 19 16 24 24 H 1.48500 * 109.46791 * 84.99469 * 23 21 19 25 25 H 1.48493 * 109.46966 * 204.99662 * 23 21 19 26 26 H 1.48502 * 109.46749 * 324.99771 * 23 21 19 27 27 H 1.08998 * 109.47149 * 59.99663 * 1 2 3 28 28 H 1.08999 * 109.47387 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47058 * 300.00170 * 1 2 3 30 30 H 1.09002 * 109.47548 * 239.99810 * 2 1 3 31 31 H 1.09004 * 109.47460 * 120.00031 * 2 1 3 32 32 H 1.09001 * 110.61820 * 323.28372 * 6 4 3 33 33 H 1.09007 * 110.61943 * 86.27685 * 6 4 3 34 34 H 1.08999 * 109.87996 * 214.06631 * 8 7 6 35 35 H 1.08998 * 109.88388 * 92.90996 * 8 7 6 36 36 H 0.96997 * 120.00085 * 83.54331 * 11 9 8 37 37 H 1.09001 * 109.47151 * 299.99514 * 15 12 11 38 38 H 1.09004 * 109.47115 * 59.99950 * 15 12 11 39 39 H 1.09002 * 109.47636 * 66.66821 * 17 16 15 40 40 H 1.08996 * 109.47213 * 186.66717 * 17 16 15 41 41 H 1.09000 * 109.47328 * 306.66984 * 17 16 15 42 42 H 1.09001 * 109.47383 * 60.00242 * 18 16 15 43 43 H 1.08999 * 109.47258 * 180.02562 * 18 16 15 44 44 H 1.09002 * 109.47285 * 300.00064 * 18 16 15 45 45 H 0.97007 * 119.99758 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8896 0.5806 -0.4514 6 6 3.9672 1.6872 1.4369 7 8 5.2295 2.3547 1.2235 8 6 5.0331 3.2907 0.1504 9 6 3.8831 2.7521 -0.7225 10 1 3.0659 3.4721 -0.7637 11 7 4.3644 2.4432 -2.0713 12 16 4.1803 3.5496 -3.2897 13 8 4.7292 2.9072 -4.4322 14 8 2.8048 3.9025 -3.2377 15 6 5.2166 4.9514 -2.7884 16 6 5.1306 6.0533 -3.8465 17 6 5.6224 5.5101 -5.1896 18 6 3.6788 6.5159 -3.9842 19 6 5.9921 7.2177 -3.4304 20 1 6.5161 7.1916 -2.4864 21 6 6.1112 8.3164 -4.2548 22 7 5.3749 8.4065 -5.3407 23 14 7.3185 9.6769 -3.8293 24 1 8.6654 9.3222 -4.3443 25 1 6.8700 10.9488 -4.4508 26 1 7.3797 9.8410 -2.3547 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.2877 2.3233 2.0042 33 1 4.1178 0.7349 1.9456 34 1 5.9435 3.3698 -0.4437 35 1 4.7658 4.2671 0.5544 36 1 4.7909 1.5907 -2.2506 37 1 4.8665 5.3382 -1.8314 38 1 6.2511 4.6220 -2.6908 39 1 4.9312 4.7472 -5.5481 40 1 5.6734 6.3232 -5.9137 41 1 6.6128 5.0728 -5.0640 42 1 3.3284 6.9029 -3.0273 43 1 3.6174 7.3005 -4.7383 44 1 3.0560 5.6735 -4.2854 45 1 5.4584 9.1797 -5.9206 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452036295.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:56 Heat of formation + Delta-G solvation = -187.460887 kcal Electronic energy + Delta-G solvation = -27037.708881 eV Core-core repulsion = 23181.815053 eV Total energy + Delta-G solvation = -3855.893829 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.95707 -38.36281 -38.13485 -38.13212 -36.93951 -35.90127 -33.63822 -32.47085 -30.02308 -29.32066 -28.33125 -27.69184 -27.23271 -24.10414 -23.49852 -22.54431 -21.38493 -20.41723 -19.03228 -18.14541 -18.10680 -17.73898 -17.07068 -16.96077 -16.62525 -16.55934 -16.18487 -15.94710 -15.33007 -15.04053 -14.73961 -14.63259 -14.42447 -14.15662 -13.81023 -13.72375 -13.44490 -13.21827 -13.06616 -13.05743 -12.90553 -12.84272 -12.75964 -12.51174 -12.38465 -12.23828 -12.21653 -12.12550 -11.93942 -11.88543 -11.56841 -11.41906 -10.97946 -10.89611 -10.62603 -10.38220 -10.14989 -8.02644 -6.20462 -0.67381 1.45713 1.47686 1.55290 1.76395 2.38780 2.45383 2.81658 3.04749 3.19617 3.22567 3.33417 3.68985 3.81110 3.92928 4.02478 4.10653 4.17378 4.19878 4.28351 4.33155 4.49371 4.58875 4.66845 4.73853 4.76450 4.83629 4.85414 4.87044 4.95824 4.99114 5.03710 5.08861 5.28225 5.38980 5.49625 5.65890 5.67139 5.97597 5.99482 6.12240 6.19440 6.35129 6.84398 7.47727 8.97130 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.019853 B = 0.003727 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.024763 B = 7510.873551 C = 8188.633231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.046 3.954 3 O -0.390 6.390 4 C 0.056 3.944 5 H 0.103 0.897 6 C 0.030 3.970 7 O -0.379 6.379 8 C 0.024 3.976 9 C 0.104 3.896 10 H 0.109 0.891 11 N -1.102 6.102 12 S 2.609 3.391 13 O -0.989 6.989 14 O -0.989 6.989 15 C -0.585 4.585 16 C 0.070 3.930 17 C -0.158 4.158 18 C -0.160 4.160 19 C -0.516 4.516 20 H 0.066 0.934 21 C 0.018 3.982 22 N -0.907 5.907 23 Si 0.953 3.047 24 H -0.277 1.277 25 H -0.289 1.289 26 H -0.267 1.267 27 H 0.048 0.952 28 H 0.093 0.907 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.123 0.877 34 H 0.106 0.894 35 H 0.086 0.914 36 H 0.425 0.575 37 H 0.138 0.862 38 H 0.143 0.857 39 H 0.027 0.973 40 H 0.070 0.930 41 H 0.044 0.956 42 H 0.040 0.960 43 H 0.072 0.928 44 H 0.030 0.970 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.637 -16.684 14.063 22.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.030 4.030 3 O -0.310 6.310 4 C -0.004 4.004 5 H 0.121 0.879 6 C -0.047 4.047 7 O -0.297 6.297 8 C -0.055 4.055 9 C -0.004 4.004 10 H 0.127 0.873 11 N -0.861 5.861 12 S 2.707 3.293 13 O -0.980 6.980 14 O -0.978 6.978 15 C -0.718 4.718 16 C 0.068 3.932 17 C -0.216 4.216 18 C -0.218 4.218 19 C -0.555 4.555 20 H 0.085 0.915 21 C -0.181 4.181 22 N -0.546 5.546 23 Si 0.779 3.221 24 H -0.203 1.203 25 H -0.215 1.215 26 H -0.191 1.191 27 H 0.067 0.933 28 H 0.112 0.888 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.141 0.859 34 H 0.124 0.876 35 H 0.104 0.896 36 H 0.262 0.738 37 H 0.157 0.843 38 H 0.162 0.838 39 H 0.046 0.954 40 H 0.088 0.912 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.091 0.909 44 H 0.048 0.952 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.265 -16.431 13.282 21.554 hybrid contribution 0.990 0.794 -0.093 1.272 sum -3.275 -15.638 13.188 20.717 Atomic orbital electron populations 1.21792 0.93160 1.03486 1.02603 1.22829 0.96319 0.82436 1.01432 1.87962 1.19478 1.28610 1.94907 1.23923 0.82533 0.97729 0.96211 0.87938 1.24103 0.85530 0.99545 0.95553 1.88916 1.31696 1.55474 1.53646 1.23929 0.99214 0.93669 0.88657 1.22349 0.96966 0.99080 0.81998 0.87340 1.55450 1.76282 1.32371 1.22035 1.04906 0.75409 0.75787 0.73206 1.93522 1.81061 1.74610 1.48770 1.93520 1.33422 1.84573 1.86334 1.30522 1.15603 1.15174 1.10505 1.17913 0.94073 0.91591 0.89584 1.22156 0.99255 0.99641 1.00554 1.22243 0.96113 1.01525 1.01949 1.21292 1.28221 1.00976 1.05036 0.91534 1.25667 0.97078 1.00170 0.95221 1.69958 1.39541 1.30328 1.14759 0.85647 0.79375 0.78471 0.78584 1.20305 1.21548 1.19116 0.93281 0.88832 0.91748 0.92791 0.90885 0.90403 0.85918 0.87568 0.89635 0.73841 0.84339 0.83841 0.95437 0.91152 0.93718 0.94096 0.90907 0.95151 0.92959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 10.28 71.98 0.74 -1.41 16 2 C 0.05 0.69 6.49 71.98 0.47 1.15 16 3 O -0.39 -8.32 10.11 -148.98 -1.51 -9.82 16 4 C 0.06 1.05 3.34 31.89 0.11 1.15 16 5 H 0.10 1.55 7.51 -2.39 -0.02 1.53 16 6 C 0.03 0.48 7.45 72.66 0.54 1.02 16 7 O -0.38 -7.78 11.52 -148.98 -1.72 -9.50 16 8 C 0.02 0.49 7.20 72.35 0.52 1.01 16 9 C 0.10 2.38 3.37 45.98 0.16 2.54 16 10 H 0.11 2.80 7.50 -2.39 -0.02 2.78 16 11 N -1.10 -27.48 5.35 -165.28 -0.88 -28.36 16 12 S 2.61 92.40 4.48 -56.49 -0.25 92.15 16 13 O -0.99 -40.19 15.84 -127.65 -2.02 -42.21 16 14 O -0.99 -41.16 15.05 -127.65 -1.92 -43.09 16 15 C -0.59 -21.12 4.91 71.98 0.35 -20.76 16 16 C 0.07 3.33 0.52 -52.93 -0.03 3.30 16 17 C -0.16 -7.74 7.58 71.98 0.55 -7.19 16 18 C -0.16 -7.91 7.80 71.98 0.56 -7.35 16 19 C -0.52 -26.25 8.01 25.60 0.20 -26.05 16 20 H 0.07 3.21 7.75 -2.91 -0.02 3.19 16 21 C 0.02 0.95 5.09 84.65 0.43 1.38 16 22 N -0.91 -49.90 9.39 21.45 0.20 -49.70 16 23 Si 0.95 41.64 29.54 68.60 2.03 43.67 16 24 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 25 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 26 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 27 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 30 H 0.05 0.77 8.12 -2.39 -0.02 0.75 16 31 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.12 1.32 8.14 -2.38 -0.02 1.30 16 34 H 0.11 2.04 7.93 -2.39 -0.02 2.02 16 35 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.43 8.51 8.58 -96.74 -0.83 7.68 16 37 H 0.14 4.36 7.94 -2.39 -0.02 4.34 16 38 H 0.14 4.48 8.14 -2.39 -0.02 4.46 16 39 H 0.03 1.29 5.96 -2.39 -0.01 1.27 16 40 H 0.07 3.77 5.99 -2.39 -0.01 3.76 16 41 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.07 3.95 6.02 -2.39 -0.01 3.93 16 44 H 0.03 1.43 5.47 -2.39 -0.01 1.42 16 45 H 0.26 13.79 8.31 -92.70 -0.77 13.02 16 Total: -1.00 -69.03 363.12 -1.32 -70.35 By element: Atomic # 1 Polarization: 27.57 SS G_CDS: 0.15 Total: 27.72 kcal Atomic # 6 Polarization: -55.81 SS G_CDS: 4.60 Total: -51.22 kcal Atomic # 7 Polarization: -77.38 SS G_CDS: -0.68 Total: -78.06 kcal Atomic # 8 Polarization: -97.45 SS G_CDS: -7.17 Total: -104.62 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Atomic # 16 Polarization: 92.40 SS G_CDS: -0.25 Total: 92.15 kcal Total: -69.03 -1.32 -70.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452036295.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.107 kcal (2) G-P(sol) polarization free energy of solvation -69.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds