Wall clock time and date at job start Fri Apr 10 2020 18:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 113.99866 * 2 1 4 4 C 1.52999 * 109.47097 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47128 * 63.67270 * 4 3 2 6 6 C 1.46498 * 120.00229 * 86.61814 * 5 4 3 7 7 H 1.08993 * 110.43938 * 176.25393 * 6 5 4 8 8 C 1.54811 * 110.60169 * 298.87721 * 6 5 4 9 9 C 1.54988 * 102.09420 * 97.84767 * 8 6 5 10 10 O 1.44386 * 103.49124 * 37.02496 * 9 8 6 11 11 C 1.43744 * 106.97226 * 319.93922 * 10 9 8 12 12 H 1.09005 * 110.00282 * 267.01792 * 11 10 9 13 13 C 1.52995 * 109.87537 * 145.93815 * 11 10 9 14 14 S 1.65599 * 119.99772 * 266.61823 * 5 4 3 15 15 O 1.42103 * 104.27697 * 26.07456 * 14 5 4 16 16 O 1.42108 * 104.27576 * 153.92901 * 14 5 4 17 17 C 1.81395 * 104.44940 * 270.00025 * 14 5 4 18 18 C 1.53001 * 109.46941 * 179.97438 * 17 14 5 19 19 C 1.50710 * 109.46893 * 179.97438 * 18 17 14 20 20 H 1.07991 * 120.00026 * 0.02562 * 19 18 17 21 21 C 1.37878 * 119.99734 * 179.97438 * 19 18 17 22 22 N 1.31516 * 120.00102 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99674 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47364 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47169 * 120.00609 * 23 21 19 26 26 H 1.48500 * 109.47236 * 240.00244 * 23 21 19 27 27 H 1.08995 * 109.47478 * 60.00197 * 1 2 3 28 28 H 1.09004 * 109.47054 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47307 * 300.00097 * 1 2 3 30 30 H 1.08998 * 109.47285 * 59.99590 * 3 2 1 31 31 H 1.09011 * 109.46728 * 299.99912 * 3 2 1 32 32 H 1.08997 * 109.47050 * 303.67274 * 4 3 2 33 33 H 1.08994 * 109.47115 * 183.67157 * 4 3 2 34 34 H 1.08995 * 110.90720 * 216.04704 * 8 6 5 35 35 H 1.09000 * 110.90658 * 339.65164 * 8 6 5 36 36 H 1.09001 * 110.62377 * 278.52529 * 9 8 6 37 37 H 1.09004 * 110.62229 * 155.52575 * 9 8 6 38 38 H 1.08997 * 109.47587 * 302.16322 * 13 11 10 39 39 H 1.08997 * 109.47411 * 62.16693 * 13 11 10 40 40 H 1.09006 * 109.46911 * 182.16656 * 13 11 10 41 41 H 1.09003 * 109.47413 * 300.00086 * 17 14 5 42 42 H 1.08998 * 109.47133 * 60.00487 * 17 14 5 43 43 H 1.08996 * 109.47830 * 299.99769 * 18 17 14 44 44 H 1.09003 * 109.47446 * 60.00574 * 18 17 14 45 45 H 0.97003 * 119.99410 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9734 0.5357 -1.2389 6 6 4.2106 1.3374 -2.4419 7 1 4.5924 0.7107 -3.2478 8 6 2.9118 2.0554 -2.8828 9 6 3.1013 3.4697 -2.2779 10 8 4.5148 3.7176 -2.4372 11 6 5.1930 2.4856 -2.1399 12 1 5.4789 2.4617 -1.0883 13 6 6.4370 2.3511 -3.0202 14 16 4.2004 -1.1042 -1.2787 15 8 3.3418 -1.6016 -0.2615 16 8 4.0000 -1.4527 -2.6418 17 6 5.9385 -1.3320 -0.8123 18 6 6.2750 -2.8246 -0.8119 19 6 7.7192 -3.0138 -0.4250 20 1 8.3352 -2.1555 -0.2014 21 6 8.2537 -4.2829 -0.3556 22 7 7.5033 -5.3282 -0.6275 23 14 10.0436 -4.5174 0.1246 24 1 10.6655 -3.1932 0.3789 25 1 10.1216 -5.3450 1.3552 26 1 10.7665 -5.2008 -0.9779 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.6886 1.8464 0.8899 31 1 1.6885 1.8464 -0.8901 32 1 3.8530 0.5879 0.8543 33 1 3.9786 2.1783 0.0652 34 1 2.8435 2.1031 -3.9696 35 1 2.0342 1.5661 -2.4603 36 1 2.8270 3.4760 -1.2230 37 1 2.5178 4.2054 -2.8316 38 1 6.1459 2.3936 -4.0697 39 1 7.1269 3.1660 -2.8013 40 1 6.9246 1.3976 -2.8168 41 1 6.5776 -0.8152 -1.5283 42 1 6.1040 -0.9225 0.1841 43 1 5.6360 -3.3410 -0.0957 44 1 6.1095 -3.2346 -1.8082 45 1 7.8793 -6.2210 -0.5783 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000487355874.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:08 Heat of formation + Delta-G solvation = -157.241266 kcal Electronic energy + Delta-G solvation = -27488.814681 eV Core-core repulsion = 23634.231273 eV Total energy + Delta-G solvation = -3854.583408 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.24926 -37.86849 -36.46425 -35.60130 -35.19669 -33.86383 -31.95719 -31.22116 -31.09770 -29.34957 -26.34688 -25.62247 -25.20826 -23.04098 -22.26753 -21.61071 -20.60846 -18.76330 -17.71119 -17.04717 -16.57977 -16.07607 -15.95639 -15.75788 -15.48399 -15.25655 -15.12694 -14.69321 -14.52652 -14.15832 -13.48836 -13.32288 -13.09463 -12.86525 -12.58237 -12.43547 -12.41454 -12.18212 -12.08881 -11.71822 -11.51994 -11.43252 -11.37684 -11.32478 -11.14107 -11.08225 -10.92127 -10.91196 -10.74583 -10.36727 -10.33852 -9.87519 -9.71889 -9.52968 -9.29197 -8.79711 -8.49415 -6.11195 -4.16596 0.81868 2.99294 3.25884 3.33199 3.36537 3.68582 3.81395 4.33514 4.37921 4.42939 4.50703 4.71390 4.77230 4.86544 4.94761 4.95884 5.02070 5.05063 5.21050 5.23971 5.25003 5.31999 5.34500 5.39689 5.48309 5.56970 5.64041 5.65778 5.72224 5.74239 5.78464 5.89649 5.89918 6.03690 6.17984 6.52123 6.53476 6.80528 7.25236 7.32477 7.38602 7.82071 8.19386 8.87108 9.48163 10.99893 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015032 B = 0.004344 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.221039 B = 6444.326902 C = 7673.315872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.355 6.355 3 C 0.028 3.972 4 C 0.122 3.878 5 N -0.992 5.992 6 C 0.120 3.880 7 H 0.118 0.882 8 C -0.170 4.170 9 C 0.043 3.957 10 O -0.372 6.372 11 C 0.060 3.940 12 H 0.080 0.920 13 C -0.155 4.155 14 S 2.586 3.414 15 O -0.931 6.931 16 O -0.966 6.966 17 C -0.596 4.596 18 C 0.029 3.971 19 C -0.519 4.519 20 H 0.061 0.939 21 C 0.058 3.942 22 N -0.890 5.890 23 Si 0.899 3.101 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.282 1.282 27 H 0.034 0.966 28 H 0.086 0.914 29 H 0.036 0.964 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.061 0.939 37 H 0.091 0.909 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.115 0.885 42 H 0.117 0.883 43 H 0.033 0.967 44 H 0.032 0.968 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.597 18.759 -1.251 21.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.273 6.273 3 C -0.051 4.051 4 C -0.003 4.003 5 N -0.826 5.826 6 C 0.013 3.987 7 H 0.136 0.864 8 C -0.209 4.209 9 C -0.033 4.033 10 O -0.291 6.291 11 C 0.001 3.999 12 H 0.098 0.902 13 C -0.213 4.213 14 S 2.684 3.316 15 O -0.921 6.921 16 O -0.957 6.957 17 C -0.729 4.729 18 C -0.010 4.010 19 C -0.558 4.558 20 H 0.080 0.920 21 C -0.145 4.145 22 N -0.529 5.529 23 Si 0.726 3.274 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.208 1.208 27 H 0.052 0.948 28 H 0.104 0.896 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.111 0.889 36 H 0.079 0.921 37 H 0.109 0.891 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.134 0.866 42 H 0.136 0.864 43 H 0.051 0.949 44 H 0.050 0.950 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.076 17.976 -1.541 21.170 hybrid contribution 1.185 0.173 0.535 1.311 sum -9.891 18.149 -1.007 20.694 Atomic orbital electron populations 1.22736 0.82173 1.02811 0.99046 1.88303 1.18440 1.25455 1.95083 1.23287 0.94844 0.86577 1.00358 1.21307 0.92580 0.99763 0.86688 1.57977 1.82076 1.26825 1.15744 1.22236 0.95012 0.93808 0.87690 0.86373 1.23618 0.98967 0.96040 1.02241 1.23640 0.83047 0.96480 1.00139 1.88895 1.17666 1.31807 1.90698 1.23222 0.93259 0.83531 0.99936 0.90246 1.21967 0.96235 1.02930 1.00151 1.06001 0.78649 0.72068 0.74891 1.93620 1.62458 1.76542 1.59456 1.93521 1.86005 1.81082 1.35084 1.30577 1.21280 1.10410 1.10610 1.18942 0.99230 0.83953 0.98852 1.21046 0.94752 0.92597 1.47419 0.92036 1.25067 0.98311 0.95964 0.95135 1.69971 1.36074 0.98486 1.48325 0.86432 0.84431 0.78280 0.78255 1.19646 1.20801 1.20795 0.94787 0.89595 0.94527 0.92859 0.92491 0.88783 0.89156 0.89503 0.88918 0.92108 0.89056 0.91556 0.91573 0.90595 0.86641 0.86416 0.94865 0.95005 0.92606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.44 16 2 O -0.35 -5.21 8.24 -57.04 -0.47 -5.68 16 3 C 0.03 0.30 5.37 37.16 0.20 0.50 16 4 C 0.12 1.37 4.79 -4.04 -0.02 1.35 16 5 N -0.99 -13.37 2.61 -105.69 -0.28 -13.65 16 6 C 0.12 1.44 3.02 -66.40 -0.20 1.24 16 7 H 0.12 1.54 6.58 -51.93 -0.34 1.19 16 8 C -0.17 -1.73 6.10 -24.73 -0.15 -1.88 16 9 C 0.04 0.38 7.01 38.21 0.27 0.65 16 10 O -0.37 -4.14 11.19 -35.23 -0.39 -4.53 16 11 C 0.06 0.65 3.32 -26.16 -0.09 0.56 16 12 H 0.08 0.81 6.50 -51.93 -0.34 0.47 16 13 C -0.16 -1.60 9.36 37.15 0.35 -1.26 16 14 S 2.59 47.43 5.33 -107.50 -0.57 46.86 16 15 O -0.93 -19.42 14.72 -66.29 -0.98 -20.40 16 16 O -0.97 -20.28 16.64 -57.54 -0.96 -21.23 16 17 C -0.60 -11.52 6.12 37.16 0.23 -11.29 16 18 C 0.03 0.75 4.98 -27.88 -0.14 0.61 16 19 C -0.52 -14.37 9.11 -34.44 -0.31 -14.69 16 20 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 21 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 22 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 23 Si 0.90 21.23 29.54 -169.99 -5.02 16.20 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 27 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.54 4.06 -51.92 -0.21 0.33 16 32 H 0.09 1.09 7.67 -51.93 -0.40 0.69 16 33 H 0.09 0.76 5.64 -51.93 -0.29 0.47 16 34 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.09 0.97 5.67 -51.93 -0.29 0.68 16 36 H 0.06 0.47 5.72 -51.93 -0.30 0.18 16 37 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.12 2.00 8.14 -51.92 -0.42 1.57 16 42 H 0.12 2.04 8.14 -51.93 -0.42 1.61 16 43 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 44 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 45 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 362.24 15.07 5.46 5.46 Total: -1.00 -35.52 362.24 -8.53 -44.05 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -7.21 Total: -0.01 kcal Atomic # 6 Polarization: -22.36 SS G_CDS: 1.15 Total: -21.22 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 0.46 Total: -39.51 kcal Atomic # 8 Polarization: -49.04 SS G_CDS: -2.80 Total: -51.84 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 47.43 SS G_CDS: -0.57 Total: 46.86 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.52 -8.53 -44.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487355874.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.189 kcal (2) G-P(sol) polarization free energy of solvation -35.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds