Wall clock time and date at job start Fri Apr 10 2020 18:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86804 * 120.00159 * 2 1 4 4 H 1.48500 * 109.46967 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47287 * 300.00249 * 3 2 1 6 6 H 1.48500 * 109.46810 * 60.00175 * 3 2 1 7 7 C 1.38726 * 120.00014 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99688 * 179.97438 * 7 2 1 9 9 O 1.34779 * 119.99735 * 0.02562 * 7 2 1 10 10 C 1.35569 * 117.00031 * 185.06240 * 9 7 2 11 11 C 1.39181 * 119.89748 * 354.35784 * 10 9 7 12 12 C 1.37596 * 120.10297 * 179.97438 * 11 10 9 13 13 C 1.40017 * 119.89890 * 359.97438 * 12 11 10 14 14 C 1.46960 * 120.10272 * 180.02562 * 13 12 11 15 15 C 1.35025 * 119.99925 * 136.68102 * 14 13 12 16 16 C 1.46250 * 120.00256 * 348.68114 * 15 14 13 17 17 O 1.21727 * 119.99907 * 353.21608 * 16 15 14 18 18 N 1.34771 * 120.00183 * 172.93933 * 16 15 14 19 19 C 1.46500 * 120.00267 * 180.27771 * 18 16 15 20 20 C 1.52995 * 109.47433 * 180.02562 * 19 18 16 21 21 O 1.42903 * 109.47035 * 64.99913 * 20 19 18 22 22 C 1.42900 * 113.99747 * 180.02562 * 21 20 19 23 23 C 1.53005 * 109.47038 * 180.02562 * 22 21 20 24 24 O 1.42903 * 109.47042 * 64.99561 * 23 22 21 25 25 C 1.40025 * 119.79595 * 0.27229 * 13 12 11 26 26 C 1.37594 * 119.89891 * 359.45165 * 25 13 12 27 27 H 0.97001 * 119.99910 * 359.97438 * 1 2 3 28 28 H 1.08007 * 119.94776 * 359.95179 * 11 10 9 29 29 H 1.08001 * 120.04938 * 180.02562 * 12 11 10 30 30 H 1.08000 * 119.99774 * 316.67657 * 14 13 12 31 31 H 1.08005 * 119.99585 * 168.68471 * 15 14 13 32 32 H 0.96996 * 120.00293 * 0.27227 * 18 16 15 33 33 H 1.09004 * 109.47192 * 300.00092 * 19 18 16 34 34 H 1.09005 * 109.47275 * 59.99657 * 19 18 16 35 35 H 1.09001 * 109.47287 * 185.00003 * 20 19 18 36 36 H 1.09005 * 109.47173 * 304.99849 * 20 19 18 37 37 H 1.09001 * 109.47016 * 299.99675 * 22 21 20 38 38 H 1.08992 * 109.47713 * 59.99401 * 22 21 20 39 39 H 1.08998 * 109.46786 * 184.99386 * 23 22 21 40 40 H 1.08998 * 109.46613 * 304.99842 * 23 22 21 41 41 H 0.96694 * 113.99917 * 179.97438 * 24 23 22 42 42 H 1.08008 * 120.04963 * 179.72778 * 25 13 12 43 43 H 1.08002 * 119.95458 * 180.25034 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0087 -1.2014 -0.0005 8 1 3.0887 -1.2013 -0.0010 9 8 1.3347 -2.3686 -0.0016 10 6 2.0689 -3.5033 0.1045 11 6 3.4589 -3.4342 0.0896 12 6 4.2082 -4.5832 0.1975 13 6 3.5703 -5.8232 0.3231 14 6 4.3662 -7.0532 0.4393 15 6 4.0214 -7.9979 1.3402 16 6 3.0192 -7.7016 2.3634 17 8 2.5866 -6.5700 2.4818 18 7 2.5706 -8.6825 3.1714 19 6 1.5623 -8.3870 4.1922 20 6 1.2306 -9.6643 4.9663 21 8 2.3850 -10.0966 5.6892 22 6 2.1816 -11.2891 6.4498 23 6 3.4758 -11.6561 7.1787 24 8 3.7855 -10.6436 8.1384 25 6 2.1716 -5.8884 0.3324 26 6 1.4305 -4.7336 0.2297 27 1 -0.4850 0.8401 0.0004 28 1 3.9502 -2.4772 -0.0072 29 1 5.2868 -4.5285 0.1863 30 1 5.2269 -7.2014 -0.1961 31 1 4.4857 -8.9725 1.3053 32 1 2.9153 -9.5843 3.0770 33 1 1.9511 -7.6362 4.8803 34 1 0.6600 -8.0076 3.7126 35 1 0.4180 -9.4651 5.6649 36 1 0.9263 -10.4438 4.2678 37 1 1.3886 -11.1240 7.1792 38 1 1.8972 -12.1021 5.7819 39 1 3.3480 -12.6117 7.6871 40 1 4.2893 -11.7341 6.4575 41 1 4.5954 -10.8112 8.6394 42 1 1.6752 -6.8432 0.4246 43 1 0.3517 -4.7825 0.2408 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490736970.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:25 Heat of formation + Delta-G solvation = -103.140698 kcal Electronic energy + Delta-G solvation = -25743.243482 eV Core-core repulsion = 21755.562100 eV Total energy + Delta-G solvation = -3987.681382 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.71743 -38.81529 -38.44051 -36.89673 -36.39825 -34.49937 -32.98240 -32.09205 -30.71784 -30.06726 -28.97529 -27.68432 -25.40000 -23.75659 -22.90133 -22.14056 -21.70087 -20.85723 -19.22427 -18.08217 -17.88483 -17.31413 -17.14868 -16.65915 -16.21263 -15.54343 -15.09384 -14.87415 -14.58788 -14.52581 -14.31918 -14.06150 -13.73926 -13.43438 -13.25779 -13.13772 -12.99408 -12.71756 -12.38948 -12.28329 -12.11631 -11.68516 -11.64633 -11.41975 -11.29944 -10.97157 -10.63801 -10.55632 -10.48578 -10.36715 -10.02493 -9.43010 -9.35194 -9.10774 -8.87699 -8.65004 -7.86565 -6.80894 -6.41925 -3.97448 1.31429 2.47751 2.75773 3.16350 3.18112 3.21656 3.22986 3.44533 3.73310 3.81205 4.00680 4.54873 4.70293 4.74598 4.76360 4.85645 4.97770 5.06922 5.08770 5.13937 5.21191 5.29234 5.31264 5.40610 5.58515 5.65296 5.78806 5.84731 5.90117 6.30167 6.39013 6.49695 6.59176 6.65536 6.80534 6.84339 7.08908 7.17446 7.22293 7.41537 7.50622 7.55219 7.76858 7.97500 8.05215 8.63579 9.04021 9.76560 10.76143 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018342 B = 0.002216 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.192801 B =12630.783273 C =13203.153927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.038 3.962 3 Si 0.942 3.058 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.389 4.389 8 H 0.094 0.906 9 O -0.174 6.174 10 C 0.171 3.829 11 C -0.251 4.251 12 C -0.042 4.042 13 C -0.188 4.188 14 C 0.025 3.975 15 C -0.264 4.264 16 C 0.538 3.462 17 O -0.513 6.513 18 N -0.731 5.731 19 C 0.124 3.876 20 C 0.050 3.950 21 O -0.376 6.376 22 C 0.060 3.940 23 C 0.078 3.922 24 O -0.566 6.566 25 C 0.013 3.987 26 C -0.203 4.203 27 H 0.270 0.730 28 H 0.126 0.874 29 H 0.106 0.894 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.397 0.603 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.055 0.945 41 H 0.379 0.621 42 H 0.101 0.899 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.020 -24.879 9.380 27.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.167 4.167 3 Si 0.767 3.233 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.465 4.465 8 H 0.112 0.888 9 O -0.076 6.076 10 C 0.116 3.884 11 C -0.270 4.270 12 C -0.060 4.060 13 C -0.189 4.189 14 C 0.006 3.994 15 C -0.286 4.286 16 C 0.327 3.673 17 O -0.389 6.389 18 N -0.385 5.385 19 C 0.000 4.000 20 C -0.027 4.027 21 O -0.296 6.296 22 C -0.017 4.017 23 C 0.000 4.000 24 O -0.371 6.371 25 C -0.006 4.006 26 C -0.222 4.222 27 H 0.079 0.921 28 H 0.143 0.857 29 H 0.124 0.876 30 H 0.139 0.861 31 H 0.138 0.862 32 H 0.230 0.770 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.226 0.774 42 H 0.119 0.881 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 5.860 -23.449 9.219 25.868 hybrid contribution 0.942 -0.241 0.365 1.039 sum 6.802 -23.690 9.584 26.445 Atomic orbital electron populations 1.70033 1.06014 1.27584 1.45888 1.25329 0.95851 0.98906 0.96568 0.85629 0.79192 0.80295 0.78211 1.19042 1.20157 1.20130 1.21442 0.91940 0.80794 1.52307 0.88849 1.83904 1.34763 1.11639 1.77327 1.19524 0.90262 0.87737 0.90843 1.20954 0.93663 0.98778 1.13589 1.20742 0.97887 0.91576 0.95840 1.18295 0.93029 0.92260 1.15314 1.22323 0.93915 0.91377 0.91830 1.22593 1.05133 1.00925 0.99909 1.18488 0.81944 0.84810 0.82018 1.91001 1.57264 1.20470 1.70212 1.45876 1.43835 1.12391 1.36370 1.21278 0.92925 0.95790 0.89970 1.22805 0.88774 0.96350 0.94740 1.88022 1.35176 1.42768 1.63598 1.22543 0.97298 0.87826 0.93999 1.22183 0.96716 0.90251 0.90878 1.86582 1.47782 1.48302 1.54421 1.20435 0.92110 0.96177 0.91868 1.20000 0.99280 0.90255 1.12687 0.92054 0.85665 0.87623 0.86122 0.86241 0.76982 0.90673 0.89923 0.91692 0.92693 0.92547 0.91890 0.92252 0.92709 0.77392 0.88113 0.86866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.87 13.67 55.48 0.76 -25.11 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 3 Si 0.94 21.11 29.55 -169.99 -5.02 16.08 16 4 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.39 -11.27 9.48 30.91 0.29 -10.97 16 8 H 0.09 2.52 5.18 -52.49 -0.27 2.25 16 9 O -0.17 -5.20 9.74 0.75 0.01 -5.19 16 10 C 0.17 4.45 6.66 -38.88 -0.26 4.19 16 11 C -0.25 -5.87 9.14 -39.47 -0.36 -6.23 16 12 C -0.04 -0.84 9.78 -39.15 -0.38 -1.23 16 13 C -0.19 -3.59 4.54 -105.03 -0.48 -4.06 16 14 C 0.03 0.37 9.80 -37.19 -0.36 0.00 16 15 C -0.26 -3.51 9.90 -37.51 -0.37 -3.88 16 16 C 0.54 8.37 6.77 -13.04 -0.09 8.28 16 17 O -0.51 -10.44 12.18 5.16 0.06 -10.37 16 18 N -0.73 -8.76 5.50 -61.76 -0.34 -9.09 16 19 C 0.12 1.43 6.06 -4.04 -0.02 1.41 16 20 C 0.05 0.43 6.07 37.16 0.23 0.65 16 21 O -0.38 -3.79 10.25 -40.08 -0.41 -4.20 16 22 C 0.06 0.42 6.32 37.16 0.23 0.66 16 23 C 0.08 0.48 7.43 37.16 0.28 0.76 16 24 O -0.57 -4.80 13.62 -40.08 -0.55 -5.34 16 25 C 0.01 0.26 6.59 -39.15 -0.26 0.00 16 26 C -0.20 -4.77 9.97 -39.47 -0.39 -5.16 16 27 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.13 2.90 5.62 -52.48 -0.29 2.61 16 29 H 0.11 1.78 8.06 -52.49 -0.42 1.35 16 30 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 31 H 0.12 1.15 8.06 -52.48 -0.42 0.72 16 32 H 0.40 3.66 8.45 -40.82 -0.34 3.32 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.38 1.42 9.12 45.56 0.42 1.83 16 42 H 0.10 1.88 7.02 -52.48 -0.37 1.51 16 43 H 0.11 2.59 8.06 -52.49 -0.42 2.16 16 LS Contribution 370.93 15.07 5.59 5.59 Total: -1.00 -37.37 370.93 -7.02 -44.39 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -5.07 Total: 7.85 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: -2.05 Total: -14.60 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: 0.42 Total: -34.20 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.89 Total: -25.11 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -37.37 -7.02 -44.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490736970.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.753 kcal (2) G-P(sol) polarization free energy of solvation -37.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds