Wall clock time and date at job start Fri Apr 10 2020 18:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47259 * 2 1 4 4 O 1.42907 * 109.47156 * 119.99967 * 2 1 3 5 5 C 1.42899 * 114.00203 * 127.52808 * 4 2 1 6 6 C 1.52997 * 110.45924 * 180.86479 * 5 4 2 7 7 S 1.81402 * 109.47024 * 297.60443 * 6 5 4 8 8 O 1.42097 * 110.54637 * 291.62699 * 7 6 5 9 9 O 1.42108 * 110.54139 * 68.37485 * 7 6 5 10 10 N 1.65596 * 104.45027 * 179.97438 * 7 6 5 11 11 C 1.46500 * 119.99750 * 65.00106 * 10 7 6 12 12 H 1.09004 * 109.47309 * 334.99772 * 11 10 7 13 13 C 1.53002 * 109.47177 * 94.99974 * 11 10 7 14 14 C 1.50701 * 109.47289 * 215.00105 * 11 10 7 15 15 H 1.08000 * 119.99601 * 359.97438 * 14 11 10 16 16 C 1.37876 * 120.00208 * 180.02562 * 14 11 10 17 17 N 1.31515 * 119.99815 * 359.97438 * 16 14 11 18 18 Si 1.86794 * 120.00153 * 180.02562 * 16 14 11 19 19 H 1.48503 * 109.47601 * 59.99224 * 18 16 14 20 20 H 1.48494 * 109.47250 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.47138 * 299.99485 * 18 16 14 22 22 C 1.54508 * 110.51193 * 303.47157 * 5 4 2 23 23 C 1.54477 * 104.06620 * 118.77893 * 22 5 4 24 24 O 1.44431 * 104.80440 * 336.02427 * 23 22 5 25 25 C 1.44423 * 105.27439 * 40.50780 * 24 23 22 26 26 H 1.09001 * 109.47055 * 300.00150 * 1 2 3 27 27 H 1.09001 * 109.47090 * 59.99652 * 1 2 3 28 28 H 1.08997 * 109.47372 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47055 * 239.99850 * 2 1 3 30 30 H 1.08994 * 109.47525 * 53.82097 * 3 2 1 31 31 H 1.09005 * 109.47661 * 173.81867 * 3 2 1 32 32 H 1.09000 * 109.47179 * 293.81892 * 3 2 1 33 33 H 1.09000 * 109.46974 * 57.60319 * 6 5 4 34 34 H 1.08997 * 109.47489 * 177.60645 * 6 5 4 35 35 H 0.97000 * 120.00162 * 245.00262 * 10 7 6 36 36 H 1.08997 * 109.47229 * 179.97438 * 13 11 10 37 37 H 1.09004 * 109.47189 * 300.00434 * 13 11 10 38 38 H 1.09007 * 109.46708 * 59.99947 * 13 11 10 39 39 H 0.97000 * 119.99537 * 179.97438 * 17 16 14 40 40 H 1.08994 * 110.51422 * 237.42676 * 22 5 4 41 41 H 1.09004 * 110.50898 * 0.13801 * 22 5 4 42 42 H 1.08998 * 110.37290 * 94.84893 * 23 22 5 43 43 H 1.08999 * 110.37572 * 217.19089 * 23 22 5 44 44 H 1.09002 * 110.37516 * 200.66414 * 25 24 23 45 45 H 1.08996 * 110.46738 * 78.36746 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.9498 -1.7117 0.8942 6 6 3.3883 -2.3905 2.1934 7 16 4.2226 -1.1801 3.2562 8 8 5.4670 -0.7929 2.6897 9 8 3.2982 -0.2089 3.7269 10 7 4.6388 -2.0370 4.6107 11 6 5.6111 -3.1289 4.5167 12 1 5.6164 -3.5242 3.5009 13 6 7.0045 -2.6025 4.8664 14 6 5.2315 -4.2240 5.4798 15 1 4.3540 -4.1171 6.1003 16 6 6.0050 -5.3618 5.5697 17 7 7.0738 -5.4916 4.8145 18 14 5.5340 -6.7195 6.7631 19 1 4.1819 -7.2307 6.4228 20 1 6.5196 -7.8261 6.6678 21 1 5.5257 -6.1812 8.1471 22 6 2.3481 -2.7477 -0.0815 23 6 3.2795 -2.6891 -1.3125 24 8 3.8804 -1.3769 -1.2586 25 6 4.1736 -1.1498 0.1372 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.5892 1.9873 0.8294 31 1 3.1244 1.4445 0.1107 32 1 1.7698 1.9234 -0.9401 33 1 2.5137 -2.7857 2.7100 34 1 4.0741 -3.2060 1.9638 35 1 4.2389 -1.8161 5.4664 36 1 7.7278 -3.4149 4.7968 37 1 7.2791 -1.8104 4.1697 38 1 6.9991 -2.2072 5.8822 39 1 7.6181 -6.2920 4.8780 40 1 2.3630 -3.7434 0.3617 41 1 1.3318 -2.4667 -0.3578 42 1 4.0465 -3.4606 -1.2451 43 1 2.7031 -2.8051 -2.2303 44 1 4.2840 -0.0832 0.3332 45 1 5.0780 -1.6840 0.4285 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595309670.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:06 Heat of formation + Delta-G solvation = -166.768494 kcal Electronic energy + Delta-G solvation = -27615.501967 eV Core-core repulsion = 23760.505427 eV Total energy + Delta-G solvation = -3854.996539 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.66716 -37.22987 -36.53065 -35.49757 -35.30818 -33.90043 -32.24271 -31.50013 -30.03032 -28.29063 -27.36037 -26.61374 -25.25514 -23.10940 -21.82854 -20.97669 -20.35080 -18.83325 -17.78359 -17.33253 -16.39507 -16.36312 -15.73002 -15.42899 -15.31490 -15.10391 -14.77131 -14.68142 -14.29013 -13.77780 -13.61719 -13.04477 -12.96081 -12.68053 -12.63565 -12.29086 -12.23015 -12.14283 -11.79396 -11.68410 -11.59541 -11.52070 -11.50096 -11.41881 -11.17280 -11.05742 -11.00342 -10.75732 -10.60969 -10.39086 -10.28863 -10.12717 -10.02212 -9.47848 -9.20903 -8.66603 -8.30886 -6.19426 -4.28596 0.81861 3.21296 3.27168 3.27901 3.30712 3.45917 3.69917 4.19203 4.19787 4.31055 4.45042 4.64125 4.73293 4.83269 4.86631 4.97831 5.04204 5.11772 5.19683 5.30540 5.40523 5.47623 5.50961 5.56154 5.62849 5.66084 5.72454 5.75788 5.84159 5.89341 6.10311 6.20853 6.26747 6.51215 6.79851 7.04916 7.07973 7.09203 7.53639 7.67579 7.78867 7.99537 8.23378 8.75565 9.38651 10.85828 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018740 B = 0.004096 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.745857 B = 6835.086446 C = 7145.980560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.067 3.933 3 C -0.167 4.167 4 O -0.358 6.358 5 C 0.101 3.899 6 C -0.622 4.622 7 S 2.611 3.389 8 O -0.959 6.959 9 O -0.962 6.962 10 N -1.104 6.104 11 C 0.273 3.727 12 H 0.036 0.964 13 C -0.158 4.158 14 C -0.530 4.530 15 H 0.064 0.936 16 C 0.065 3.935 17 N -0.886 5.886 18 Si 0.900 3.100 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.275 1.275 22 C -0.176 4.176 23 C 0.038 3.962 24 O -0.365 6.365 25 C -0.001 4.001 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.144 0.856 34 H 0.149 0.851 35 H 0.409 0.591 36 H 0.090 0.910 37 H 0.027 0.973 38 H 0.032 0.968 39 H 0.266 0.734 40 H 0.095 0.905 41 H 0.089 0.911 42 H 0.069 0.931 43 H 0.096 0.904 44 H 0.108 0.892 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.969 5.722 -11.467 16.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.010 3.990 3 C -0.224 4.224 4 O -0.278 6.278 5 C 0.059 3.941 6 C -0.749 4.749 7 S 2.701 3.299 8 O -0.949 6.949 9 O -0.952 6.952 10 N -0.865 5.865 11 C 0.169 3.831 12 H 0.054 0.946 13 C -0.218 4.218 14 C -0.570 4.570 15 H 0.083 0.917 16 C -0.138 4.138 17 N -0.524 5.524 18 Si 0.728 3.272 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.201 1.201 22 C -0.215 4.215 23 C -0.039 4.039 24 O -0.284 6.284 25 C -0.078 4.078 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.102 0.898 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.162 0.838 34 H 0.167 0.833 35 H 0.242 0.758 36 H 0.109 0.891 37 H 0.046 0.954 38 H 0.051 0.949 39 H 0.076 0.924 40 H 0.114 0.886 41 H 0.108 0.892 42 H 0.087 0.913 43 H 0.114 0.886 44 H 0.126 0.874 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.576 6.635 -11.854 16.620 hybrid contribution -0.603 -1.769 0.911 2.079 sum -10.179 4.866 -10.943 15.718 Atomic orbital electron populations 1.22060 0.94506 1.02358 1.02548 1.22296 0.94333 0.93315 0.89041 1.22225 1.02013 0.95902 1.02304 1.88123 1.59416 1.48357 1.31863 1.22399 0.90141 0.88229 0.93344 1.30675 1.15452 1.18713 1.10020 1.04818 0.74781 0.75119 0.75157 1.93581 1.41086 1.80572 1.79708 1.93551 1.65920 1.57139 1.78613 1.55674 1.56538 1.51593 1.22682 1.18514 0.84569 0.82636 0.97395 0.94601 1.22225 1.00333 1.00537 0.98659 1.21292 1.11315 1.01413 1.22943 0.91748 1.24928 0.94718 0.98310 0.95847 1.69871 1.15304 1.28232 1.38981 0.86531 0.78226 0.81070 0.81423 1.20203 1.21149 1.20081 1.23639 1.00838 1.00976 0.96002 1.23514 0.95685 0.86165 0.98494 1.89140 1.81204 1.33822 1.24196 1.24589 0.97442 1.03798 0.81993 0.91592 0.91495 0.92349 0.89823 0.91618 0.92083 0.91564 0.83751 0.83253 0.75763 0.89111 0.95351 0.94924 0.92447 0.88637 0.89233 0.91306 0.88618 0.87386 0.88977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 9.51 37.16 0.35 -1.21 16 2 C 0.07 0.81 1.99 -26.74 -0.05 0.76 16 3 C -0.17 -1.94 9.51 37.16 0.35 -1.59 16 4 O -0.36 -5.33 8.97 -37.08 -0.33 -5.67 16 5 C 0.10 1.42 0.90 -89.05 -0.08 1.34 16 6 C -0.62 -9.40 4.91 37.16 0.18 -9.22 16 7 S 2.61 48.61 4.91 -107.50 -0.53 48.08 16 8 O -0.96 -19.83 15.42 -57.54 -0.89 -20.72 16 9 O -0.96 -19.68 17.56 -60.33 -1.06 -20.74 16 10 N -1.10 -22.16 5.35 -5.88 -0.03 -22.19 16 11 C 0.27 6.38 2.66 -69.08 -0.18 6.20 16 12 H 0.04 0.85 7.15 -51.93 -0.37 0.48 16 13 C -0.16 -3.78 9.29 37.16 0.35 -3.44 16 14 C -0.53 -13.31 8.76 -34.44 -0.30 -13.61 16 15 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 16 C 0.07 1.67 5.30 -17.82 -0.09 1.57 16 17 N -0.89 -23.49 11.32 55.43 0.63 -22.86 16 18 Si 0.90 19.88 29.54 -169.99 -5.02 14.86 16 19 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 20 H -0.29 -6.31 7.11 56.52 0.40 -5.90 16 21 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 22 C -0.18 -1.95 5.77 -25.16 -0.15 -2.09 16 23 C 0.04 0.40 7.38 37.93 0.28 0.68 16 24 O -0.37 -4.86 10.23 -35.23 -0.36 -5.22 16 25 C 0.00 -0.02 4.83 37.94 0.18 0.17 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.54 7.63 -51.93 -0.40 0.15 16 29 H 0.08 0.96 4.79 -51.93 -0.25 0.71 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.76 6.43 -51.93 -0.33 0.43 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.14 1.98 8.14 -51.92 -0.42 1.55 16 34 H 0.15 2.12 7.44 -51.93 -0.39 1.73 16 35 H 0.41 7.69 8.79 -34.47 -0.30 7.38 16 36 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 37 H 0.03 0.64 7.43 -51.93 -0.39 0.26 16 38 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 40 H 0.10 0.97 7.73 -51.93 -0.40 0.57 16 41 H 0.09 0.89 6.46 -51.93 -0.34 0.55 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.11 1.60 6.26 -51.93 -0.33 1.28 16 45 H 0.09 1.38 7.18 -51.93 -0.37 1.01 16 LS Contribution 360.08 15.07 5.43 5.43 Total: -1.00 -30.73 360.08 -8.43 -39.16 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -7.10 Total: 10.31 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: 0.84 Total: -20.44 kcal Atomic # 7 Polarization: -45.64 SS G_CDS: 0.60 Total: -45.05 kcal Atomic # 8 Polarization: -49.70 SS G_CDS: -2.64 Total: -52.34 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Atomic # 16 Polarization: 48.61 SS G_CDS: -0.53 Total: 48.08 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.73 -8.43 -39.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595309670.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.613 kcal (2) G-P(sol) polarization free energy of solvation -30.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds