Wall clock time and date at job start Fri Apr 10 2020 18:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47466 * 2 1 4 4 O 1.42904 * 109.47278 * 120.00225 * 2 1 3 5 5 C 1.42896 * 114.00116 * 114.31437 * 4 2 1 6 6 C 1.53002 * 110.45652 * 178.47397 * 5 4 2 7 7 S 1.81397 * 109.47065 * 62.39584 * 6 5 4 8 8 O 1.42097 * 110.54033 * 291.62536 * 7 6 5 9 9 O 1.42104 * 110.54207 * 68.37290 * 7 6 5 10 10 N 1.65599 * 104.44964 * 179.97438 * 7 6 5 11 11 C 1.46501 * 120.00027 * 64.99725 * 10 7 6 12 12 H 1.08997 * 109.46727 * 25.00516 * 11 10 7 13 13 C 1.52993 * 109.47241 * 265.00204 * 11 10 7 14 14 C 1.50697 * 109.46847 * 145.00106 * 11 10 7 15 15 H 1.08001 * 120.00273 * 359.97438 * 14 11 10 16 16 C 1.37886 * 119.99880 * 180.02562 * 14 11 10 17 17 N 1.31516 * 119.99624 * 359.97438 * 16 14 11 18 18 Si 1.86801 * 119.99993 * 180.02562 * 16 14 11 19 19 H 1.48497 * 109.46801 * 89.99872 * 18 16 14 20 20 H 1.48500 * 109.46716 * 210.00103 * 18 16 14 21 21 H 1.48505 * 109.46802 * 329.99867 * 18 16 14 22 22 C 1.54514 * 110.51241 * 55.87024 * 5 4 2 23 23 C 1.54480 * 104.06341 * 241.21924 * 22 5 4 24 24 O 1.44427 * 104.80156 * 23.97730 * 23 22 5 25 25 C 1.44427 * 105.27604 * 319.48506 * 24 23 22 26 26 H 1.09004 * 109.47243 * 55.65922 * 1 2 3 27 27 H 1.09002 * 109.47728 * 175.66399 * 1 2 3 28 28 H 1.09009 * 109.47228 * 295.66377 * 1 2 3 29 29 H 1.08999 * 109.46923 * 239.99923 * 2 1 3 30 30 H 1.08999 * 109.47050 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.46872 * 300.00073 * 3 2 1 32 32 H 1.08999 * 109.47112 * 60.00039 * 3 2 1 33 33 H 1.08998 * 109.46754 * 302.39523 * 6 5 4 34 34 H 1.09008 * 109.46750 * 182.39658 * 6 5 4 35 35 H 0.96998 * 119.99954 * 245.00184 * 10 7 6 36 36 H 1.08997 * 109.47304 * 60.00051 * 13 11 10 37 37 H 1.09003 * 109.47423 * 179.97438 * 13 11 10 38 38 H 1.09005 * 109.47549 * 300.00123 * 13 11 10 39 39 H 0.96995 * 119.99195 * 179.97438 * 17 16 14 40 40 H 1.09005 * 110.50848 * 359.85817 * 22 5 4 41 41 H 1.08992 * 110.51344 * 122.43424 * 22 5 4 42 42 H 1.09003 * 110.37172 * 142.80659 * 23 22 5 43 43 H 1.08993 * 110.37343 * 265.03815 * 23 22 5 44 44 H 1.08990 * 110.37684 * 281.68200 * 25 24 23 45 45 H 1.09007 * 110.36656 * 159.34140 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.7068 -1.8883 0.8913 6 6 3.2119 -2.5206 2.1898 7 16 1.7987 -2.9496 3.2431 8 8 1.1550 -1.7746 3.7166 9 8 1.0519 -4.0125 2.6669 10 7 2.4799 -3.6168 4.5970 11 6 3.3177 -2.7967 5.4755 12 1 3.0397 -1.7483 5.3676 13 6 4.7878 -2.9767 5.0922 14 6 3.1154 -3.2253 6.9060 15 1 2.4310 -4.0280 7.1377 16 6 3.8034 -2.5920 7.9193 17 7 4.6365 -1.6142 7.6373 18 14 3.5533 -3.1238 9.6925 19 1 4.5301 -4.1895 10.0321 20 1 3.7578 -1.9598 10.5918 21 1 2.1731 -3.6446 9.8630 22 6 3.8824 -1.6277 -0.0770 23 6 3.5477 -2.4898 -1.3144 24 8 2.1142 -2.6600 -1.2687 25 6 1.8010 -2.8771 0.1244 26 1 -0.3634 0.5797 -0.8486 27 1 -0.3634 -1.0247 -0.0777 28 1 -0.3634 0.4451 0.9264 29 1 1.8932 -0.5138 -0.8900 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.8534 -1.8119 2.7134 34 1 3.7794 -3.4220 1.9582 35 1 2.3243 -4.5506 4.8083 36 1 4.9341 -2.6667 4.0575 37 1 5.4111 -2.3662 5.7455 38 1 5.0657 -4.0252 5.2000 39 1 5.1202 -1.1684 8.3502 40 1 3.9277 -0.5728 -0.3475 41 1 4.8236 -1.9471 0.3703 42 1 3.8394 -1.9717 -2.2279 43 1 4.0484 -3.4559 -1.2504 44 1 2.0322 -3.9033 0.4099 45 1 0.7508 -2.6565 0.3160 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595309671.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:10 Heat of formation + Delta-G solvation = -165.159650 kcal Electronic energy + Delta-G solvation = -27620.743988 eV Core-core repulsion = 23765.817213 eV Total energy + Delta-G solvation = -3854.926775 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.70819 -37.25172 -36.54533 -35.53494 -35.28276 -33.91663 -32.20357 -31.51724 -30.10139 -28.32381 -27.32479 -26.74238 -25.23311 -23.17042 -21.83571 -20.95724 -20.35383 -18.86216 -17.72006 -17.46876 -16.49080 -16.23604 -15.81735 -15.44813 -15.33167 -15.10597 -14.77567 -14.68704 -14.29530 -13.75290 -13.59701 -13.11022 -13.01800 -12.69501 -12.67520 -12.29850 -12.21139 -12.12544 -11.82492 -11.76664 -11.60839 -11.58821 -11.45897 -11.38576 -11.23339 -11.02690 -10.97332 -10.75666 -10.62462 -10.41280 -10.32933 -10.09956 -10.02703 -9.49118 -9.22029 -8.64639 -8.29820 -6.14419 -4.20956 0.79627 3.25797 3.30360 3.32901 3.36247 3.46210 3.63947 4.14114 4.20102 4.35755 4.39835 4.61294 4.66534 4.79844 4.86204 4.95012 5.03857 5.18296 5.20789 5.28070 5.34570 5.39877 5.48092 5.53983 5.56681 5.64074 5.73608 5.78570 5.83648 5.86295 6.15956 6.23777 6.28727 6.43872 6.66813 6.71043 6.92643 7.11675 7.52997 7.61894 7.85930 7.97933 8.24476 8.81754 9.44978 10.92122 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.020714 B = 0.003885 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.405449 B = 7204.622480 C = 7362.845863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.068 3.932 3 C -0.159 4.159 4 O -0.354 6.354 5 C 0.101 3.899 6 C -0.627 4.627 7 S 2.610 3.390 8 O -0.937 6.937 9 O -0.980 6.980 10 N -1.103 6.103 11 C 0.263 3.737 12 H 0.053 0.947 13 C -0.163 4.163 14 C -0.519 4.519 15 H 0.065 0.935 16 C 0.063 3.937 17 N -0.890 5.890 18 Si 0.902 3.098 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.273 1.273 22 C -0.176 4.176 23 C 0.039 3.961 24 O -0.365 6.365 25 C 0.000 4.000 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.150 0.850 34 H 0.142 0.858 35 H 0.408 0.592 36 H 0.011 0.989 37 H 0.096 0.904 38 H 0.036 0.964 39 H 0.264 0.736 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.066 0.934 44 H 0.088 0.912 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.044 0.964 -17.630 17.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.011 3.989 3 C -0.217 4.217 4 O -0.274 6.274 5 C 0.059 3.941 6 C -0.752 4.752 7 S 2.700 3.300 8 O -0.927 6.927 9 O -0.971 6.971 10 N -0.863 5.863 11 C 0.159 3.841 12 H 0.070 0.930 13 C -0.223 4.223 14 C -0.559 4.559 15 H 0.083 0.917 16 C -0.139 4.139 17 N -0.528 5.528 18 Si 0.729 3.271 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.197 1.197 22 C -0.215 4.215 23 C -0.038 4.038 24 O -0.283 6.283 25 C -0.077 4.077 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.101 0.899 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.168 0.832 34 H 0.161 0.839 35 H 0.241 0.759 36 H 0.030 0.970 37 H 0.114 0.886 38 H 0.056 0.944 39 H 0.074 0.926 40 H 0.109 0.891 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.084 0.916 44 H 0.106 0.894 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.890 1.515 -17.742 17.829 hybrid contribution 0.994 -0.691 0.954 1.542 sum 0.105 0.824 -16.788 16.809 Atomic orbital electron populations 1.22208 0.94926 1.02552 1.02805 1.22300 0.94508 0.93242 0.88896 1.22083 1.01412 0.95527 1.02639 1.88175 1.72832 1.34769 1.31597 1.22376 0.91983 0.86536 0.93171 1.30858 1.23638 1.10689 1.10057 1.04874 0.75847 0.74669 0.74658 1.93606 1.70943 1.50548 1.77594 1.93531 1.68642 1.55440 1.79455 1.55637 1.68520 1.22980 1.39181 1.18647 0.85736 0.90640 0.89092 0.92965 1.22407 1.00951 1.01205 0.97722 1.21207 1.25334 1.19304 0.90037 0.91713 1.24921 0.94847 0.94742 0.99432 1.69851 1.27130 1.22912 1.32904 0.86432 0.78681 0.78117 0.83823 1.20605 1.21057 1.19736 1.23650 0.99440 1.02525 0.95898 1.23494 0.82315 0.99365 0.98607 1.89150 1.21913 1.92900 1.24379 1.24573 1.01324 0.99795 0.82031 0.91522 0.92293 0.91254 0.89930 0.92333 0.91562 0.91402 0.83186 0.83938 0.75883 0.97041 0.88562 0.94448 0.92570 0.89056 0.88744 0.88595 0.91569 0.89361 0.87338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.00 9.49 37.15 0.35 -1.65 16 2 C 0.07 0.84 1.99 -26.73 -0.05 0.79 16 3 C -0.16 -1.69 9.49 37.16 0.35 -1.34 16 4 O -0.35 -5.47 8.98 -37.08 -0.33 -5.80 16 5 C 0.10 1.38 0.90 -89.05 -0.08 1.30 16 6 C -0.63 -9.08 4.17 37.16 0.16 -8.93 16 7 S 2.61 48.87 4.97 -107.50 -0.53 48.34 16 8 O -0.94 -21.37 16.88 -60.34 -1.02 -22.39 16 9 O -0.98 -18.79 16.39 -57.54 -0.94 -19.73 16 10 N -1.10 -22.18 5.35 -5.89 -0.03 -22.22 16 11 C 0.26 6.25 2.80 -69.09 -0.19 6.06 16 12 H 0.05 1.38 7.48 -51.93 -0.39 0.99 16 13 C -0.16 -3.51 9.26 37.15 0.34 -3.17 16 14 C -0.52 -13.70 8.76 -34.44 -0.30 -14.00 16 15 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 16 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 17 N -0.89 -24.21 11.32 55.43 0.63 -23.58 16 18 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 22 C -0.18 -1.84 5.77 -25.16 -0.15 -1.99 16 23 C 0.04 0.37 7.38 37.93 0.28 0.65 16 24 O -0.36 -4.51 10.21 -35.23 -0.36 -4.87 16 25 C 0.00 0.00 4.84 37.93 0.18 0.18 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.72 6.74 -51.93 -0.35 0.37 16 28 H 0.07 0.90 8.14 -51.92 -0.42 0.47 16 29 H 0.08 0.95 4.78 -51.93 -0.25 0.70 16 30 H 0.06 0.59 7.46 -51.93 -0.39 0.20 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.15 2.20 6.78 -51.92 -0.35 1.85 16 34 H 0.14 1.62 8.14 -51.92 -0.42 1.19 16 35 H 0.41 7.54 8.79 -34.47 -0.30 7.24 16 36 H 0.01 0.19 5.78 -51.93 -0.30 -0.11 16 37 H 0.10 2.32 6.07 -51.93 -0.32 2.00 16 38 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 40 H 0.09 0.90 6.27 -51.93 -0.33 0.57 16 41 H 0.09 0.87 7.73 -51.93 -0.40 0.47 16 42 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.09 1.15 7.19 -51.93 -0.37 0.78 16 45 H 0.11 1.55 6.54 -51.93 -0.34 1.21 16 LS Contribution 357.98 15.07 5.39 5.39 Total: -1.00 -31.98 357.98 -8.43 -40.41 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -7.01 Total: 9.29 kcal Atomic # 6 Polarization: -21.31 SS G_CDS: 0.80 Total: -20.51 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: 0.60 Total: -45.79 kcal Atomic # 8 Polarization: -50.13 SS G_CDS: -2.65 Total: -52.79 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: 48.87 SS G_CDS: -0.53 Total: 48.34 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.98 -8.43 -40.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595309671.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.747 kcal (2) G-P(sol) polarization free energy of solvation -31.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds