Wall clock time and date at job start Fri Apr 10 2020 18:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47466 * 2 1 4 4 O 1.42904 * 109.47278 * 120.00225 * 2 1 3 5 5 C 1.42896 * 114.00116 * 114.31437 * 4 2 1 6 6 C 1.53002 * 110.45652 * 178.47397 * 5 4 2 7 7 S 1.81397 * 109.47065 * 62.39584 * 6 5 4 8 8 O 1.42097 * 110.54033 * 291.62536 * 7 6 5 9 9 O 1.42104 * 110.54207 * 68.37290 * 7 6 5 10 10 N 1.65599 * 104.44964 * 179.97438 * 7 6 5 11 11 C 1.46501 * 120.00027 * 64.99725 * 10 7 6 12 12 H 1.08997 * 109.46727 * 25.00516 * 11 10 7 13 13 C 1.52993 * 109.47241 * 265.00204 * 11 10 7 14 14 C 1.50697 * 109.46847 * 145.00106 * 11 10 7 15 15 H 1.08001 * 120.00273 * 359.97438 * 14 11 10 16 16 C 1.37886 * 119.99880 * 180.02562 * 14 11 10 17 17 N 1.31516 * 119.99624 * 359.97438 * 16 14 11 18 18 Si 1.86801 * 119.99993 * 180.02562 * 16 14 11 19 19 H 1.48497 * 109.46801 * 89.99872 * 18 16 14 20 20 H 1.48500 * 109.46716 * 210.00103 * 18 16 14 21 21 H 1.48505 * 109.46802 * 329.99867 * 18 16 14 22 22 C 1.54514 * 110.51241 * 55.87024 * 5 4 2 23 23 C 1.54480 * 104.06341 * 241.21924 * 22 5 4 24 24 O 1.44427 * 104.80156 * 23.97730 * 23 22 5 25 25 C 1.44427 * 105.27604 * 319.48506 * 24 23 22 26 26 H 1.09004 * 109.47243 * 55.65922 * 1 2 3 27 27 H 1.09002 * 109.47728 * 175.66399 * 1 2 3 28 28 H 1.09009 * 109.47228 * 295.66377 * 1 2 3 29 29 H 1.08999 * 109.46923 * 239.99923 * 2 1 3 30 30 H 1.08999 * 109.47050 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.46872 * 300.00073 * 3 2 1 32 32 H 1.08999 * 109.47112 * 60.00039 * 3 2 1 33 33 H 1.08998 * 109.46754 * 302.39523 * 6 5 4 34 34 H 1.09008 * 109.46750 * 182.39658 * 6 5 4 35 35 H 0.96998 * 119.99954 * 245.00184 * 10 7 6 36 36 H 1.08997 * 109.47304 * 60.00051 * 13 11 10 37 37 H 1.09003 * 109.47423 * 179.97438 * 13 11 10 38 38 H 1.09005 * 109.47549 * 300.00123 * 13 11 10 39 39 H 0.96995 * 119.99195 * 179.97438 * 17 16 14 40 40 H 1.09005 * 110.50848 * 359.85817 * 22 5 4 41 41 H 1.08992 * 110.51344 * 122.43424 * 22 5 4 42 42 H 1.09003 * 110.37172 * 142.80659 * 23 22 5 43 43 H 1.08993 * 110.37343 * 265.03815 * 23 22 5 44 44 H 1.08990 * 110.37684 * 281.68200 * 25 24 23 45 45 H 1.09007 * 110.36656 * 159.34140 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.7068 -1.8883 0.8913 6 6 3.2119 -2.5206 2.1898 7 16 1.7987 -2.9496 3.2431 8 8 1.1550 -1.7746 3.7166 9 8 1.0519 -4.0125 2.6669 10 7 2.4799 -3.6168 4.5970 11 6 3.3177 -2.7967 5.4755 12 1 3.0397 -1.7483 5.3676 13 6 4.7878 -2.9767 5.0922 14 6 3.1154 -3.2253 6.9060 15 1 2.4310 -4.0280 7.1377 16 6 3.8034 -2.5920 7.9193 17 7 4.6365 -1.6142 7.6373 18 14 3.5533 -3.1238 9.6925 19 1 4.5301 -4.1895 10.0321 20 1 3.7578 -1.9598 10.5918 21 1 2.1731 -3.6446 9.8630 22 6 3.8824 -1.6277 -0.0770 23 6 3.5477 -2.4898 -1.3144 24 8 2.1142 -2.6600 -1.2687 25 6 1.8010 -2.8771 0.1244 26 1 -0.3634 0.5797 -0.8486 27 1 -0.3634 -1.0247 -0.0777 28 1 -0.3634 0.4451 0.9264 29 1 1.8932 -0.5138 -0.8900 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.8534 -1.8119 2.7134 34 1 3.7794 -3.4220 1.9582 35 1 2.3243 -4.5506 4.8083 36 1 4.9341 -2.6667 4.0575 37 1 5.4111 -2.3662 5.7455 38 1 5.0657 -4.0252 5.2000 39 1 5.1202 -1.1684 8.3502 40 1 3.9277 -0.5728 -0.3475 41 1 4.8236 -1.9471 0.3703 42 1 3.8394 -1.9717 -2.2279 43 1 4.0484 -3.4559 -1.2504 44 1 2.0322 -3.9033 0.4099 45 1 0.7508 -2.6565 0.3160 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595309671.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:09 Heat of formation + Delta-G solvation = -189.746676 kcal Electronic energy + Delta-G solvation = -27621.810161 eV Core-core repulsion = 23765.817213 eV Total energy + Delta-G solvation = -3855.992948 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.65786 -38.25370 -38.08060 -37.28752 -36.90794 -34.91239 -34.12849 -32.49845 -31.01377 -30.06496 -28.28416 -27.82369 -27.12296 -23.99794 -22.96783 -22.62391 -21.31334 -20.38019 -19.17308 -18.78975 -17.95659 -17.53726 -17.16460 -16.76137 -16.61966 -16.42803 -16.10341 -15.68821 -15.38818 -15.19952 -14.77739 -14.49445 -14.12429 -14.00728 -13.95198 -13.58839 -13.53350 -13.26783 -13.11576 -13.05445 -13.02472 -12.94656 -12.80085 -12.64509 -12.52296 -12.45352 -12.37408 -12.21352 -12.05165 -11.98811 -11.64796 -11.54277 -11.10368 -10.98980 -10.59250 -10.45722 -10.04513 -8.15212 -6.28434 -0.67268 1.43771 1.45834 1.55345 1.91626 2.33734 2.44119 2.72279 2.83437 3.12740 3.14803 3.38012 3.49121 3.51960 3.95810 4.00241 4.07461 4.09030 4.19734 4.26744 4.33212 4.51160 4.52788 4.56913 4.73015 4.75955 4.78444 4.88540 4.89695 4.91673 4.93440 4.98204 5.01162 5.15154 5.26223 5.33537 5.58210 5.58964 5.78447 6.06210 6.13364 6.15966 6.42233 6.81499 7.40770 8.90147 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.020714 B = 0.003885 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.405449 B = 7204.622480 C = 7362.845863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.061 3.939 3 C -0.157 4.157 4 O -0.386 6.386 5 C 0.090 3.910 6 C -0.603 4.603 7 S 2.607 3.393 8 O -0.990 6.990 9 O -0.990 6.990 10 N -1.106 6.106 11 C 0.266 3.734 12 H 0.018 0.982 13 C -0.155 4.155 14 C -0.544 4.544 15 H 0.060 0.940 16 C 0.018 3.982 17 N -0.912 5.912 18 Si 0.960 3.040 19 H -0.269 1.269 20 H -0.283 1.283 21 H -0.274 1.274 22 C -0.170 4.170 23 C 0.035 3.965 24 O -0.374 6.374 25 C -0.002 4.002 26 H 0.093 0.907 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.096 0.904 30 H 0.065 0.935 31 H 0.091 0.909 32 H 0.050 0.950 33 H 0.153 0.847 34 H 0.183 0.817 35 H 0.414 0.586 36 H 0.049 0.951 37 H 0.070 0.930 38 H 0.045 0.955 39 H 0.266 0.734 40 H 0.098 0.902 41 H 0.113 0.887 42 H 0.121 0.879 43 H 0.083 0.917 44 H 0.092 0.908 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.702 0.435 -19.496 19.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.005 3.995 3 C -0.214 4.214 4 O -0.306 6.306 5 C 0.048 3.952 6 C -0.734 4.734 7 S 2.703 3.297 8 O -0.980 6.980 9 O -0.980 6.980 10 N -0.865 5.865 11 C 0.161 3.839 12 H 0.036 0.964 13 C -0.214 4.214 14 C -0.583 4.583 15 H 0.078 0.922 16 C -0.182 4.182 17 N -0.551 5.551 18 Si 0.785 3.215 19 H -0.194 1.194 20 H -0.209 1.209 21 H -0.199 1.199 22 C -0.209 4.209 23 C -0.041 4.041 24 O -0.293 6.293 25 C -0.080 4.080 26 H 0.112 0.888 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.114 0.886 30 H 0.084 0.916 31 H 0.110 0.890 32 H 0.069 0.931 33 H 0.171 0.829 34 H 0.201 0.799 35 H 0.248 0.752 36 H 0.067 0.933 37 H 0.089 0.911 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.117 0.883 41 H 0.131 0.869 42 H 0.139 0.861 43 H 0.101 0.899 44 H 0.110 0.890 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.724 0.957 -19.578 19.615 hybrid contribution 0.453 -0.506 1.416 1.570 sum 1.177 0.451 -18.162 18.206 Atomic orbital electron populations 1.22262 0.95274 1.02289 1.02981 1.22519 0.94431 0.94103 0.88492 1.22093 1.01885 0.94389 1.03042 1.88155 1.73436 1.35509 1.33499 1.22592 0.93458 0.86196 0.92971 1.30641 1.20721 1.12706 1.09353 1.04681 0.76834 0.73506 0.74684 1.93543 1.73440 1.52042 1.78960 1.93512 1.69848 1.55473 1.79187 1.55443 1.68207 1.22850 1.40046 1.18375 0.87567 0.89207 0.88766 0.96445 1.22231 0.98411 1.01325 0.99427 1.21592 1.25399 1.19417 0.91942 0.92153 1.25652 0.94686 0.94829 1.03039 1.69963 1.27628 1.23568 1.33910 0.85530 0.78559 0.77926 0.79460 1.19420 1.20876 1.19901 1.23674 0.98521 1.03403 0.95310 1.23778 0.80686 1.00452 0.99218 1.89144 1.23991 1.92959 1.23235 1.24493 1.00518 0.99918 0.83021 0.88827 0.93217 0.93158 0.88649 0.91587 0.89040 0.93107 0.82861 0.79920 0.75231 0.93259 0.91150 0.93556 0.92474 0.88332 0.86862 0.86058 0.89862 0.88964 0.89110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.09 9.49 71.98 0.68 -3.40 16 2 C 0.06 1.45 1.99 30.59 0.06 1.51 16 3 C -0.16 -3.10 9.49 71.98 0.68 -2.42 16 4 O -0.39 -11.74 8.98 -147.21 -1.32 -13.06 16 5 C 0.09 2.28 0.90 -9.77 -0.01 2.27 16 6 C -0.60 -16.25 4.17 71.98 0.30 -15.95 16 7 S 2.61 98.38 4.97 -56.49 -0.28 98.10 16 8 O -0.99 -47.17 16.88 -124.98 -2.11 -49.28 16 9 O -0.99 -38.06 16.39 -127.65 -2.09 -40.15 16 10 N -1.11 -44.76 5.35 -172.54 -0.92 -45.68 16 11 C 0.27 12.81 2.80 44.24 0.12 12.94 16 12 H 0.02 0.97 7.48 -2.39 -0.02 0.95 16 13 C -0.15 -6.50 9.26 71.98 0.67 -5.83 16 14 C -0.54 -29.13 8.76 25.60 0.22 -28.91 16 15 H 0.06 3.18 7.81 -2.91 -0.02 3.16 16 16 C 0.02 0.98 5.30 84.66 0.45 1.43 16 17 N -0.91 -50.17 11.32 21.45 0.24 -49.93 16 18 Si 0.96 42.54 29.54 68.60 2.03 44.57 16 19 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 20 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 21 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 22 C -0.17 -2.92 5.77 31.61 0.18 -2.74 16 23 C 0.03 0.51 7.38 72.49 0.54 1.05 16 24 O -0.37 -8.31 10.21 -148.98 -1.52 -9.83 16 25 C 0.00 -0.05 4.84 72.49 0.35 0.30 16 26 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 27 H 0.05 1.25 6.74 -2.39 -0.02 1.23 16 28 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 29 H 0.10 1.99 4.78 -2.39 -0.01 1.98 16 30 H 0.07 1.19 7.46 -2.39 -0.02 1.17 16 31 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.15 4.17 6.78 -2.39 -0.02 4.15 16 34 H 0.18 3.41 8.14 -2.39 -0.02 3.39 16 35 H 0.41 15.37 8.79 -96.75 -0.85 14.52 16 36 H 0.05 1.63 5.78 -2.39 -0.01 1.62 16 37 H 0.07 3.37 6.07 -2.39 -0.01 3.35 16 38 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 39 H 0.27 13.88 8.31 -92.71 -0.77 13.11 16 40 H 0.10 1.57 6.27 -2.38 -0.01 1.56 16 41 H 0.11 1.53 7.73 -2.39 -0.02 1.51 16 42 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.09 2.24 7.19 -2.39 -0.02 2.22 16 45 H 0.09 2.62 6.54 -2.38 -0.02 2.60 16 Total: -1.00 -71.30 357.98 -1.58 -72.88 By element: Atomic # 1 Polarization: 32.00 SS G_CDS: 0.15 Total: 32.15 kcal Atomic # 6 Polarization: -44.00 SS G_CDS: 4.25 Total: -39.75 kcal Atomic # 7 Polarization: -94.93 SS G_CDS: -0.68 Total: -95.61 kcal Atomic # 8 Polarization: -105.28 SS G_CDS: -7.04 Total: -112.32 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Atomic # 16 Polarization: 98.38 SS G_CDS: -0.28 Total: 98.10 kcal Total: -71.30 -1.58 -72.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595309671.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.869 kcal (2) G-P(sol) polarization free energy of solvation -71.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds