Wall clock time and date at job start Fri Apr 10 2020 18:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47441 * 2 1 4 4 O 1.42898 * 109.47076 * 120.00459 * 2 1 3 5 5 C 1.42892 * 114.00418 * 143.55729 * 4 2 1 6 6 C 1.53001 * 110.46012 * 64.86330 * 5 4 2 7 7 S 1.81400 * 109.47108 * 63.47910 * 6 5 4 8 8 O 1.42100 * 110.54186 * 68.38060 * 7 6 5 9 9 O 1.42103 * 110.54278 * 291.62672 * 7 6 5 10 10 N 1.65605 * 104.44704 * 180.02562 * 7 6 5 11 11 C 1.46500 * 120.00061 * 64.99955 * 10 7 6 12 12 C 1.53001 * 109.47046 * 164.99849 * 11 10 7 13 13 C 1.50700 * 109.47142 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99871 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99813 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99700 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 120.00256 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.46956 * 270.00263 * 17 15 13 19 19 H 1.48499 * 109.46987 * 29.99721 * 17 15 13 20 20 H 1.48501 * 109.47345 * 149.99980 * 17 15 13 21 21 C 1.54506 * 110.51107 * 302.25632 * 5 4 2 22 22 C 1.54473 * 104.06581 * 241.21770 * 21 5 4 23 23 O 1.44422 * 104.80333 * 23.97577 * 22 21 5 24 24 C 1.44427 * 105.27603 * 319.48934 * 23 22 21 25 25 H 1.08999 * 109.47280 * 300.00395 * 1 2 3 26 26 H 1.09009 * 109.47334 * 59.99668 * 1 2 3 27 27 H 1.08991 * 109.47335 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46942 * 239.99948 * 2 1 3 29 29 H 1.09004 * 109.46923 * 174.55355 * 3 2 1 30 30 H 1.08997 * 109.47141 * 294.55605 * 3 2 1 31 31 H 1.09001 * 109.46729 * 54.55547 * 3 2 1 32 32 H 1.09006 * 109.46745 * 303.47838 * 6 5 4 33 33 H 1.08997 * 109.47624 * 183.48465 * 6 5 4 34 34 H 0.97001 * 119.99809 * 245.00124 * 10 7 6 35 35 H 1.09004 * 109.46967 * 44.99959 * 11 10 7 36 36 H 1.08992 * 109.47366 * 284.99771 * 11 10 7 37 37 H 1.08995 * 109.47201 * 60.00006 * 12 11 10 38 38 H 1.09008 * 109.47185 * 300.00107 * 12 11 10 39 39 H 0.96996 * 119.99905 * 180.02562 * 16 15 13 40 40 H 1.09003 * 110.51374 * 359.86590 * 21 5 4 41 41 H 1.09008 * 110.51171 * 122.43584 * 21 5 4 42 42 H 1.09004 * 110.37444 * 142.80768 * 22 21 5 43 43 H 1.09004 * 110.37399 * 265.03465 * 22 21 5 44 44 H 1.08990 * 110.37083 * 281.67780 * 24 23 22 45 45 H 1.08998 * 110.37167 * 159.33921 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 3.1901 -1.4442 0.9504 6 6 4.3624 -0.5320 0.5838 7 16 4.7272 0.5727 1.9755 8 8 5.2556 -0.1626 3.0706 9 8 3.6721 1.5064 2.1609 10 7 5.9991 1.4937 1.4496 11 6 5.8202 2.4162 0.3257 12 6 6.9941 3.3962 0.2784 13 6 6.8098 4.3456 -0.8773 14 1 5.9419 4.2589 -1.5142 15 6 7.7492 5.3248 -1.1217 16 7 7.5885 6.1530 -2.1306 17 14 9.2499 5.4753 -0.0197 18 1 8.9471 6.3951 1.1062 19 1 9.6064 4.1372 0.5166 20 1 10.3893 6.0132 -0.8056 21 6 2.9563 -2.4967 -0.1563 22 6 3.1815 -3.8482 0.5572 23 8 2.9302 -3.5749 1.9529 24 6 3.5289 -2.2843 2.2018 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1257 1.4440 0.0975 30 1 1.7585 1.9274 -0.9347 31 1 1.5993 1.9837 0.8372 32 1 4.1007 0.0614 -0.2924 33 1 5.2399 -1.1393 0.3622 34 1 6.8626 1.4223 1.8857 35 1 4.8899 2.9695 0.4543 36 1 5.7810 1.8511 -0.6055 37 1 7.9244 2.8430 0.1498 38 1 7.0333 3.9614 1.2097 39 1 8.2495 6.8417 -2.3027 40 1 1.9370 -2.4309 -0.5369 41 1 3.6744 -2.3656 -0.9659 42 1 2.4807 -4.5954 0.1847 43 1 4.2076 -4.1867 0.4139 44 1 4.6088 -2.3820 2.3123 45 1 3.0950 -1.8302 3.0926 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595319486.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:13 Heat of formation + Delta-G solvation = -189.580438 kcal Electronic energy + Delta-G solvation = -27269.892675 eV Core-core repulsion = 23413.906935 eV Total energy + Delta-G solvation = -3855.985740 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.42439 -38.80131 -38.15409 -37.17462 -36.93631 -34.71587 -34.41015 -32.75699 -31.51958 -31.02988 -28.45496 -27.47900 -26.38576 -24.19041 -22.78430 -22.74095 -21.18524 -20.42109 -19.11566 -18.60820 -18.52240 -17.67655 -17.21565 -16.81175 -16.62621 -16.26015 -16.22825 -16.16446 -15.61893 -15.60285 -15.17418 -14.65435 -14.51433 -14.18665 -13.80674 -13.54857 -13.51534 -13.44342 -13.32415 -13.27023 -13.17812 -13.03237 -12.84691 -12.60694 -12.46142 -12.36996 -12.32550 -12.02025 -11.82863 -11.71679 -11.64282 -11.47105 -11.43772 -10.83558 -10.80450 -10.74981 -10.32189 -8.28642 -6.33395 -0.81482 1.38720 1.39763 1.50090 1.71395 2.32710 2.36613 2.65432 2.78817 3.07351 3.08419 3.23980 3.45099 3.56309 3.86577 4.00714 4.09172 4.11249 4.15768 4.20402 4.22723 4.31434 4.41029 4.48125 4.57470 4.66003 4.72659 4.77968 4.79437 4.84515 4.88854 4.91450 4.95484 4.97349 5.30538 5.35699 5.43530 5.46593 5.61586 5.63927 6.05028 6.13703 6.26464 6.74464 7.31365 8.87200 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018683 B = 0.003701 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.354595 B = 7563.276677 C = 8212.219210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.069 3.931 3 C -0.179 4.179 4 O -0.378 6.378 5 C 0.093 3.907 6 C -0.651 4.651 7 S 2.607 3.393 8 O -0.985 6.985 9 O -0.969 6.969 10 N -1.118 6.118 11 C 0.132 3.868 12 C -0.020 4.020 13 C -0.531 4.531 14 H 0.044 0.956 15 C 0.009 3.991 16 N -0.947 5.947 17 Si 0.943 3.057 18 H -0.274 1.274 19 H -0.240 1.240 20 H -0.285 1.285 21 C -0.169 4.169 22 C 0.037 3.963 23 O -0.382 6.382 24 C 0.033 3.967 25 H 0.052 0.948 26 H 0.088 0.912 27 H 0.069 0.931 28 H 0.091 0.909 29 H 0.046 0.954 30 H 0.078 0.922 31 H 0.055 0.945 32 H 0.160 0.840 33 H 0.182 0.818 34 H 0.420 0.580 35 H 0.062 0.938 36 H 0.079 0.921 37 H 0.038 0.962 38 H 0.020 0.980 39 H 0.266 0.734 40 H 0.098 0.902 41 H 0.116 0.884 42 H 0.114 0.886 43 H 0.084 0.916 44 H 0.101 0.899 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.783 -20.959 2.170 22.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.012 3.988 3 C -0.237 4.237 4 O -0.298 6.298 5 C 0.051 3.949 6 C -0.782 4.782 7 S 2.702 3.298 8 O -0.975 6.975 9 O -0.959 6.959 10 N -0.878 5.878 11 C 0.006 3.994 12 C -0.059 4.059 13 C -0.570 4.570 14 H 0.063 0.937 15 C -0.188 4.188 16 N -0.587 5.587 17 Si 0.767 3.233 18 H -0.199 1.199 19 H -0.164 1.164 20 H -0.211 1.211 21 C -0.207 4.207 22 C -0.039 4.039 23 O -0.301 6.301 24 C -0.044 4.044 25 H 0.071 0.929 26 H 0.107 0.893 27 H 0.088 0.912 28 H 0.109 0.891 29 H 0.065 0.935 30 H 0.097 0.903 31 H 0.074 0.926 32 H 0.178 0.822 33 H 0.199 0.801 34 H 0.255 0.745 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.056 0.944 38 H 0.038 0.962 39 H 0.075 0.925 40 H 0.117 0.883 41 H 0.134 0.866 42 H 0.132 0.868 43 H 0.102 0.898 44 H 0.119 0.881 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.515 -20.834 3.182 23.124 hybrid contribution 1.347 0.878 -0.478 1.677 sum -8.168 -19.957 2.704 21.732 Atomic orbital electron populations 1.21920 0.92461 1.03127 1.03146 1.22446 0.96096 0.92067 0.88172 1.22588 1.01155 0.97099 1.02815 1.88105 1.41264 1.64452 1.36020 1.22639 0.83773 0.90791 0.97737 1.31321 1.09408 1.15869 1.21595 1.04848 0.73358 0.75238 0.76323 1.93548 1.79011 1.74289 1.50697 1.93605 1.56780 1.60358 1.85136 1.55508 1.28911 1.55653 1.47745 1.21216 0.99923 0.90937 0.87293 1.19709 0.95559 0.94605 0.95989 1.21305 1.08079 1.14595 1.13014 0.93720 1.25910 1.01492 0.94951 0.96486 1.70042 1.37503 1.19857 1.31293 0.85765 0.78698 0.80040 0.78805 1.19907 1.16357 1.21099 1.23660 1.05585 0.93416 0.98066 1.23712 1.03277 0.97058 0.79899 1.89166 1.78234 1.34610 1.28107 1.23852 1.00010 0.83780 0.96777 0.92884 0.89322 0.91229 0.89095 0.93529 0.90285 0.92587 0.82211 0.80076 0.74459 0.91927 0.90320 0.94358 0.96172 0.92469 0.88324 0.86551 0.86789 0.89810 0.88087 0.89077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.56 71.98 0.69 -1.92 16 2 C 0.07 1.40 2.31 30.59 0.07 1.47 16 3 C -0.18 -4.48 7.80 71.98 0.56 -3.92 16 4 O -0.38 -9.27 9.02 -148.14 -1.34 -10.60 16 5 C 0.09 1.84 0.73 -9.78 -0.01 1.84 16 6 C -0.65 -12.08 4.16 71.98 0.30 -11.78 16 7 S 2.61 72.98 4.65 -56.49 -0.26 72.71 16 8 O -0.98 -30.77 16.30 -127.65 -2.08 -32.85 16 9 O -0.97 -33.98 13.79 -125.43 -1.73 -35.71 16 10 N -1.12 -32.10 5.89 -187.49 -1.10 -33.20 16 11 C 0.13 4.54 5.95 86.38 0.51 5.05 16 12 C -0.02 -0.84 4.18 29.85 0.12 -0.72 16 13 C -0.53 -28.55 9.66 25.60 0.25 -28.30 16 14 H 0.04 2.60 7.99 -2.91 -0.02 2.57 16 15 C 0.01 0.51 5.47 84.65 0.46 0.97 16 16 N -0.95 -57.07 13.96 21.45 0.30 -56.77 16 17 Si 0.94 42.21 27.47 68.60 1.88 44.09 16 18 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 19 H -0.24 -9.69 6.54 99.48 0.65 -9.04 16 20 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 21 C -0.17 -2.18 5.48 31.61 0.17 -2.01 16 22 C 0.04 0.49 7.63 72.48 0.55 1.04 16 23 O -0.38 -8.41 11.65 -148.98 -1.74 -10.15 16 24 C 0.03 0.74 5.50 72.49 0.40 1.14 16 25 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 27 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.09 1.36 6.16 -2.38 -0.01 1.35 16 29 H 0.05 1.21 3.47 -2.38 -0.01 1.20 16 30 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.05 1.65 7.84 -2.39 -0.02 1.63 16 32 H 0.16 2.62 5.74 -2.39 -0.01 2.61 16 33 H 0.18 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.42 10.93 8.62 -96.74 -0.83 10.10 16 35 H 0.06 2.32 7.54 -2.38 -0.02 2.30 16 36 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.04 1.53 7.20 -2.39 -0.02 1.51 16 38 H 0.02 0.86 7.57 -2.38 -0.02 0.85 16 39 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 40 H 0.10 1.18 6.85 -2.39 -0.02 1.17 16 41 H 0.12 0.93 7.73 -2.38 -0.02 0.91 16 42 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.08 0.80 8.14 -2.39 -0.02 0.79 16 44 H 0.10 2.02 7.10 -2.39 -0.02 2.00 16 45 H 0.09 2.35 8.09 -2.39 -0.02 2.33 16 Total: -1.00 -74.13 357.24 -1.87 -76.01 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: 0.10 Total: 23.58 kcal Atomic # 6 Polarization: -41.21 SS G_CDS: 4.09 Total: -37.12 kcal Atomic # 7 Polarization: -89.17 SS G_CDS: -0.80 Total: -89.97 kcal Atomic # 8 Polarization: -82.43 SS G_CDS: -6.88 Total: -89.31 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 1.88 Total: 44.09 kcal Atomic # 16 Polarization: 72.98 SS G_CDS: -0.26 Total: 72.71 kcal Total: -74.13 -1.87 -76.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595319486.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.571 kcal (2) G-P(sol) polarization free energy of solvation -74.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds