Wall clock time and date at job start Fri Apr 10 2020 18:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 114.00305 * 2 1 4 4 C 1.52995 * 109.47556 * 184.75298 * 3 2 1 5 5 N 1.46497 * 109.47150 * 67.26393 * 4 3 2 6 6 C 1.46496 * 120.00777 * 273.95780 * 5 4 3 7 7 C 1.50700 * 109.46926 * 84.99724 * 6 5 4 8 8 H 1.08002 * 120.00343 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99699 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00322 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99826 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47371 * 89.99863 * 11 9 7 13 13 H 1.48500 * 109.47001 * 210.00048 * 11 9 7 14 14 H 1.48500 * 109.47167 * 329.99399 * 11 9 7 15 15 S 1.65607 * 119.99608 * 93.95618 * 5 4 3 16 16 O 1.42092 * 104.27767 * 211.44492 * 15 5 4 17 17 O 1.42104 * 104.27696 * 339.30179 * 15 5 4 18 18 C 1.81396 * 104.44832 * 95.37232 * 15 5 4 19 19 H 1.08994 * 110.43603 * 67.43290 * 18 15 5 20 20 C 1.54892 * 110.48746 * 304.88853 * 18 15 5 21 21 C 1.54884 * 102.74896 * 203.37741 * 20 18 15 22 22 C 1.54270 * 104.19786 * 37.94666 * 21 20 18 23 23 C 1.54091 * 106.61762 * 336.27799 * 22 21 20 24 24 H 1.08997 * 110.00616 * 119.38083 * 23 22 21 25 25 O 1.42902 * 110.15874 * 240.88040 * 23 22 21 26 26 C 1.42907 * 113.99597 * 267.11729 * 25 23 22 27 27 H 1.08997 * 109.47133 * 175.03614 * 1 2 3 28 28 H 1.09010 * 109.47093 * 55.03907 * 1 2 3 29 29 H 1.08999 * 109.47445 * 295.03864 * 1 2 3 30 30 H 1.08997 * 109.47479 * 304.75632 * 3 2 1 31 31 H 1.09007 * 109.46553 * 64.75197 * 3 2 1 32 32 H 1.08997 * 109.47485 * 187.27092 * 4 3 2 33 33 H 1.09004 * 109.46654 * 307.27123 * 4 3 2 34 34 H 1.08995 * 109.47444 * 204.99790 * 6 5 4 35 35 H 1.09002 * 109.46818 * 325.00304 * 6 5 4 36 36 H 0.96996 * 120.00008 * 180.02562 * 10 9 7 37 37 H 1.09000 * 110.75828 * 321.69943 * 20 18 15 38 38 H 1.09000 * 110.75286 * 85.06535 * 20 18 15 39 39 H 1.09005 * 110.48652 * 156.62010 * 21 20 18 40 40 H 1.09000 * 110.49331 * 279.26641 * 21 20 18 41 41 H 1.09001 * 110.03256 * 95.66455 * 22 21 20 42 42 H 1.08998 * 110.03405 * 217.05242 * 22 21 20 43 43 H 1.08998 * 109.46592 * 180.02562 * 26 25 23 44 44 H 1.08997 * 109.46660 * 299.99894 * 26 25 23 45 45 H 1.08995 * 109.47096 * 59.99750 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5309 1.1867 -0.1195 5 7 3.8771 0.6598 -1.4419 6 6 3.9090 -0.7871 -1.6687 7 6 2.5214 -1.2747 -1.9972 8 1 1.6982 -0.5765 -2.0338 9 6 2.3028 -2.6122 -2.2510 10 7 3.3052 -3.4623 -2.2070 11 14 0.5829 -3.2165 -2.6589 12 1 0.3732 -3.1585 -4.1279 13 1 0.4266 -4.6173 -2.1914 14 1 -0.4184 -2.3541 -1.9815 15 16 4.2326 1.7001 -2.6805 16 8 3.7894 1.0204 -3.8470 17 8 3.6460 2.9318 -2.2829 18 6 6.0423 1.8222 -2.6638 19 1 6.4906 0.8717 -2.9529 20 6 6.5436 2.2543 -1.2633 21 6 7.9261 2.8800 -1.5732 22 6 7.7136 3.6254 -2.9071 23 6 6.5160 2.9504 -3.6032 24 1 5.7145 3.6741 -3.7514 25 8 6.9210 2.4034 -4.8597 26 6 6.7297 3.2866 -5.9668 27 1 -0.3633 -1.0238 -0.0889 28 1 -0.3634 0.5889 -0.8423 29 1 -0.3634 0.4349 0.9311 30 1 1.6229 1.8757 -0.8443 31 1 1.7576 1.8156 0.9296 32 1 3.9834 2.1698 0.0099 33 1 3.9041 0.5108 0.6499 34 1 4.5785 -1.0101 -2.4994 35 1 4.2666 -1.2881 -0.7691 36 1 3.1514 -4.4031 -2.3859 37 1 5.8741 2.9942 -0.8247 38 1 6.6490 1.3902 -0.6073 39 1 8.2134 3.5787 -0.7874 40 1 8.6804 2.1015 -1.6873 41 1 7.4932 4.6758 -2.7169 42 1 8.6040 3.5378 -3.5298 43 1 7.0607 2.7976 -6.8830 44 1 5.6728 3.5392 -6.0515 45 1 7.3093 4.1963 -5.8102 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601336680.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:37 Heat of formation + Delta-G solvation = -153.640953 kcal Electronic energy + Delta-G solvation = -27773.707176 eV Core-core repulsion = 23919.279890 eV Total energy + Delta-G solvation = -3854.427287 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.12049 -37.47776 -36.57562 -35.97142 -35.33813 -35.04359 -32.34211 -29.38039 -29.15891 -28.43789 -26.51026 -26.20983 -25.36018 -22.59906 -21.84709 -21.16389 -20.66598 -18.32011 -17.43166 -16.93684 -16.57542 -16.25748 -15.60544 -15.37529 -15.32991 -14.99631 -14.72927 -14.47721 -14.15349 -13.96130 -13.79936 -13.35317 -13.04424 -12.46373 -12.38031 -12.25382 -12.06909 -11.87567 -11.65617 -11.57101 -11.45908 -11.39070 -11.26762 -11.06388 -10.96265 -10.82781 -10.72030 -10.66988 -10.52051 -10.23205 -10.16044 -9.81216 -9.70122 -9.49718 -8.67097 -8.19986 -7.94728 -5.82164 -3.76454 0.80867 3.28182 3.43965 3.50230 3.51479 3.58913 4.15106 4.36502 4.44862 4.53825 4.63909 4.69377 4.88162 5.00772 5.10493 5.22131 5.26354 5.31531 5.43408 5.49341 5.52036 5.58061 5.61751 5.67712 5.72303 5.73979 5.81145 5.87768 5.91750 5.94045 5.96245 6.04416 6.14418 6.35678 6.41853 6.52217 7.06428 7.30951 7.51830 7.71259 7.99616 8.18864 8.46577 9.23577 9.82230 11.28578 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016311 B = 0.005008 C = 0.004462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.185934 B = 5590.267759 C = 6273.592527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.337 6.337 3 C 0.043 3.957 4 C 0.137 3.863 5 N -0.977 5.977 6 C 0.259 3.741 7 C -0.478 4.478 8 H 0.070 0.930 9 C 0.053 3.947 10 N -0.909 5.909 11 Si 0.890 3.110 12 H -0.284 1.284 13 H -0.291 1.291 14 H -0.274 1.274 15 S 2.605 3.395 16 O -0.930 6.930 17 O -0.976 6.976 18 C -0.611 4.611 19 H 0.151 0.849 20 C -0.099 4.099 21 C -0.113 4.113 22 C -0.141 4.141 23 C 0.108 3.892 24 H 0.067 0.933 25 O -0.375 6.375 26 C 0.024 3.976 27 H 0.080 0.920 28 H 0.031 0.969 29 H 0.024 0.976 30 H 0.047 0.953 31 H 0.041 0.959 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.031 0.969 35 H 0.036 0.964 36 H 0.258 0.742 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.091 0.909 44 H 0.045 0.955 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.379 14.822 2.610 16.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.255 6.255 3 C -0.036 4.036 4 C 0.011 3.989 5 N -0.817 5.817 6 C 0.138 3.862 7 C -0.518 4.518 8 H 0.088 0.912 9 C -0.146 4.146 10 N -0.551 5.551 11 Si 0.719 3.281 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.199 1.199 15 S 2.696 3.304 16 O -0.920 6.920 17 O -0.966 6.966 18 C -0.717 4.717 19 H 0.169 0.831 20 C -0.138 4.138 21 C -0.151 4.151 22 C -0.179 4.179 23 C 0.049 3.951 24 H 0.085 0.915 25 O -0.294 6.294 26 C -0.073 4.073 27 H 0.099 0.901 28 H 0.050 0.950 29 H 0.043 0.957 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.049 0.951 35 H 0.054 0.946 36 H 0.067 0.933 37 H 0.099 0.901 38 H 0.109 0.891 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.097 0.903 43 H 0.109 0.891 44 H 0.064 0.936 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 7.007 14.670 1.992 16.379 hybrid contribution -0.675 -0.238 -0.127 0.726 sum 6.332 14.433 1.865 15.871 Atomic orbital electron populations 1.22634 0.83415 1.02302 0.98080 1.88425 1.17387 1.24988 1.94668 1.22904 0.95178 0.86483 0.99026 1.21103 0.93450 0.98480 0.85893 1.57428 1.81483 1.19885 1.22859 1.19095 0.98208 0.71865 0.97060 1.21472 0.94064 0.92835 1.43404 0.91182 1.24841 0.96573 0.96819 0.96364 1.69917 1.30456 1.03011 1.51760 0.86652 0.85443 0.77580 0.78427 1.21083 1.21696 1.19863 1.05248 0.76691 0.73656 0.74815 1.93639 1.77415 1.72997 1.47971 1.93503 1.73949 1.46037 1.83098 1.31853 1.29685 1.07751 1.02433 0.83110 1.22261 0.97580 1.01494 0.92419 1.22244 0.96974 0.99527 0.96339 1.22678 0.98440 0.99419 0.97379 1.22397 0.96696 0.92245 0.83783 0.91458 1.88018 1.85072 1.41553 1.14736 1.22894 1.00479 0.94194 0.89694 0.90114 0.95002 0.95723 0.93509 0.94087 0.90291 0.89885 0.95082 0.94604 0.93277 0.90132 0.89053 0.90996 0.90909 0.90899 0.90295 0.89081 0.93611 0.93884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.77 101.05 1.09 1.68 16 2 O -0.34 -7.07 6.97 -35.23 -0.25 -7.32 16 3 C 0.04 0.77 6.19 37.15 0.23 1.00 16 4 C 0.14 2.31 5.67 -4.05 -0.02 2.29 16 5 N -0.98 -19.72 2.53 -115.67 -0.29 -20.01 16 6 C 0.26 6.42 4.97 -5.20 -0.03 6.40 16 7 C -0.48 -13.34 7.31 -34.44 -0.25 -13.59 16 8 H 0.07 1.98 6.05 -52.49 -0.32 1.66 16 9 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 10 N -0.91 -27.17 13.29 55.43 0.74 -26.44 16 11 Si 0.89 22.45 29.54 -169.99 -5.02 17.43 16 12 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 13 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 14 H -0.27 -6.55 6.78 56.52 0.38 -6.17 16 15 S 2.60 50.68 4.68 -107.50 -0.50 50.18 16 16 O -0.93 -22.62 17.19 -57.54 -0.99 -23.61 16 17 O -0.98 -18.95 16.35 -57.54 -0.94 -19.89 16 18 C -0.61 -9.26 3.33 -25.07 -0.08 -9.34 16 19 H 0.15 2.37 8.08 -51.93 -0.42 1.95 16 20 C -0.10 -1.18 6.05 -24.74 -0.15 -1.33 16 21 C -0.11 -1.13 6.83 -25.07 -0.17 -1.30 16 22 C -0.14 -1.50 6.62 -25.50 -0.17 -1.67 16 23 C 0.11 1.50 2.98 -25.50 -0.08 1.42 16 24 H 0.07 0.90 7.30 -51.93 -0.38 0.52 16 25 O -0.38 -5.59 10.27 -35.23 -0.36 -5.95 16 26 C 0.02 0.27 10.85 101.05 1.10 1.36 16 27 H 0.08 1.51 7.82 -51.93 -0.41 1.10 16 28 H 0.03 0.56 8.12 -51.92 -0.42 0.14 16 29 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.89 8.02 -51.93 -0.42 0.47 16 31 H 0.04 0.60 8.14 -51.92 -0.42 0.18 16 32 H 0.08 1.06 6.75 -51.93 -0.35 0.71 16 33 H 0.08 1.31 7.99 -51.93 -0.41 0.90 16 34 H 0.03 0.82 7.76 -51.93 -0.40 0.42 16 35 H 0.04 0.91 7.99 -51.93 -0.42 0.49 16 36 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 37 H 0.08 0.88 7.24 -51.93 -0.38 0.51 16 38 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.08 0.80 7.96 -51.93 -0.41 0.38 16 43 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.05 0.51 8.10 -51.93 -0.42 0.09 16 45 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 371.47 15.07 5.60 5.60 Total: -1.00 -35.03 371.47 -8.34 -43.37 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -7.69 Total: -1.71 kcal Atomic # 6 Polarization: -13.01 SS G_CDS: 1.37 Total: -11.64 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: 0.44 Total: -46.45 kcal Atomic # 8 Polarization: -54.24 SS G_CDS: -2.54 Total: -56.77 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Atomic # 16 Polarization: 50.68 SS G_CDS: -0.50 Total: 50.18 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.03 -8.34 -43.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601336680.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.272 kcal (2) G-P(sol) polarization free energy of solvation -35.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds