Wall clock time and date at job start Fri Apr 10 2020 18:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 114.00305 * 2 1 4 4 C 1.52995 * 109.47556 * 184.75298 * 3 2 1 5 5 N 1.46497 * 109.47150 * 67.26393 * 4 3 2 6 6 C 1.46496 * 120.00777 * 273.95780 * 5 4 3 7 7 C 1.50700 * 109.46926 * 84.99724 * 6 5 4 8 8 H 1.08002 * 120.00343 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99699 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00322 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99826 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47371 * 89.99863 * 11 9 7 13 13 H 1.48500 * 109.47001 * 210.00048 * 11 9 7 14 14 H 1.48500 * 109.47167 * 329.99399 * 11 9 7 15 15 S 1.65607 * 119.99608 * 93.95618 * 5 4 3 16 16 O 1.42092 * 104.27767 * 211.44492 * 15 5 4 17 17 O 1.42104 * 104.27696 * 339.30179 * 15 5 4 18 18 C 1.81396 * 104.44832 * 95.37232 * 15 5 4 19 19 H 1.08994 * 110.43603 * 67.43290 * 18 15 5 20 20 C 1.54892 * 110.48746 * 304.88853 * 18 15 5 21 21 C 1.54884 * 102.74896 * 203.37741 * 20 18 15 22 22 C 1.54270 * 104.19786 * 37.94666 * 21 20 18 23 23 C 1.54091 * 106.61762 * 336.27799 * 22 21 20 24 24 H 1.08997 * 110.00616 * 119.38083 * 23 22 21 25 25 O 1.42902 * 110.15874 * 240.88040 * 23 22 21 26 26 C 1.42907 * 113.99597 * 267.11729 * 25 23 22 27 27 H 1.08997 * 109.47133 * 175.03614 * 1 2 3 28 28 H 1.09010 * 109.47093 * 55.03907 * 1 2 3 29 29 H 1.08999 * 109.47445 * 295.03864 * 1 2 3 30 30 H 1.08997 * 109.47479 * 304.75632 * 3 2 1 31 31 H 1.09007 * 109.46553 * 64.75197 * 3 2 1 32 32 H 1.08997 * 109.47485 * 187.27092 * 4 3 2 33 33 H 1.09004 * 109.46654 * 307.27123 * 4 3 2 34 34 H 1.08995 * 109.47444 * 204.99790 * 6 5 4 35 35 H 1.09002 * 109.46818 * 325.00304 * 6 5 4 36 36 H 0.96996 * 120.00008 * 180.02562 * 10 9 7 37 37 H 1.09000 * 110.75828 * 321.69943 * 20 18 15 38 38 H 1.09000 * 110.75286 * 85.06535 * 20 18 15 39 39 H 1.09005 * 110.48652 * 156.62010 * 21 20 18 40 40 H 1.09000 * 110.49331 * 279.26641 * 21 20 18 41 41 H 1.09001 * 110.03256 * 95.66455 * 22 21 20 42 42 H 1.08998 * 110.03405 * 217.05242 * 22 21 20 43 43 H 1.08998 * 109.46592 * 180.02562 * 26 25 23 44 44 H 1.08997 * 109.46660 * 299.99894 * 26 25 23 45 45 H 1.08995 * 109.47096 * 59.99750 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5309 1.1867 -0.1195 5 7 3.8771 0.6598 -1.4419 6 6 3.9090 -0.7871 -1.6687 7 6 2.5214 -1.2747 -1.9972 8 1 1.6982 -0.5765 -2.0338 9 6 2.3028 -2.6122 -2.2510 10 7 3.3052 -3.4623 -2.2070 11 14 0.5829 -3.2165 -2.6589 12 1 0.3732 -3.1585 -4.1279 13 1 0.4266 -4.6173 -2.1914 14 1 -0.4184 -2.3541 -1.9815 15 16 4.2326 1.7001 -2.6805 16 8 3.7894 1.0204 -3.8470 17 8 3.6460 2.9318 -2.2829 18 6 6.0423 1.8222 -2.6638 19 1 6.4906 0.8717 -2.9529 20 6 6.5436 2.2543 -1.2633 21 6 7.9261 2.8800 -1.5732 22 6 7.7136 3.6254 -2.9071 23 6 6.5160 2.9504 -3.6032 24 1 5.7145 3.6741 -3.7514 25 8 6.9210 2.4034 -4.8597 26 6 6.7297 3.2866 -5.9668 27 1 -0.3633 -1.0238 -0.0889 28 1 -0.3634 0.5889 -0.8423 29 1 -0.3634 0.4349 0.9311 30 1 1.6229 1.8757 -0.8443 31 1 1.7576 1.8156 0.9296 32 1 3.9834 2.1698 0.0099 33 1 3.9041 0.5108 0.6499 34 1 4.5785 -1.0101 -2.4994 35 1 4.2666 -1.2881 -0.7691 36 1 3.1514 -4.4031 -2.3859 37 1 5.8741 2.9942 -0.8247 38 1 6.6490 1.3902 -0.6073 39 1 8.2134 3.5787 -0.7874 40 1 8.6804 2.1015 -1.6873 41 1 7.4932 4.6758 -2.7169 42 1 8.6040 3.5378 -3.5298 43 1 7.0607 2.7976 -6.8830 44 1 5.6728 3.5392 -6.0515 45 1 7.3093 4.1963 -5.8102 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601336680.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:36 Heat of formation + Delta-G solvation = -179.886614 kcal Electronic energy + Delta-G solvation = -27774.845273 eV Core-core repulsion = 23919.279890 eV Total energy + Delta-G solvation = -3855.565384 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.13145 -38.97469 -38.16296 -37.05468 -36.97970 -36.63668 -34.42719 -30.94820 -30.23328 -29.37865 -28.32350 -27.14181 -26.90300 -24.48699 -23.34273 -22.25237 -21.58607 -19.79981 -18.77431 -18.66944 -18.00829 -17.71194 -17.17750 -16.91448 -16.41415 -16.34629 -16.25231 -16.00692 -15.68584 -15.11352 -14.91063 -14.71022 -14.39803 -14.02272 -13.90799 -13.74759 -13.43867 -13.21721 -13.11417 -12.92817 -12.88686 -12.82068 -12.65433 -12.48266 -12.47825 -12.25159 -12.13850 -11.95841 -11.92715 -11.77629 -11.49425 -11.41692 -11.38756 -10.70834 -10.42131 -10.19824 -9.64921 -8.01310 -6.00678 -0.69274 1.39493 1.43013 1.50653 1.77526 2.52629 2.54912 2.93589 3.10195 3.12463 3.30656 3.37867 3.53714 3.68706 3.99769 4.11332 4.19007 4.30085 4.31904 4.36381 4.42738 4.45419 4.50338 4.57504 4.59727 4.64360 4.70722 4.78301 4.81858 4.90306 4.94599 4.96603 5.09336 5.11959 5.16055 5.32527 5.35662 5.58246 5.89952 6.03362 6.08921 6.34742 6.58917 7.03437 7.60506 9.08289 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016311 B = 0.005008 C = 0.004462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.185934 B = 5590.267759 C = 6273.592527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.374 6.374 3 C 0.036 3.964 4 C 0.127 3.873 5 N -0.982 5.982 6 C 0.275 3.725 7 C -0.479 4.479 8 H 0.062 0.938 9 C 0.000 4.000 10 N -0.941 5.941 11 Si 0.937 3.063 12 H -0.290 1.290 13 H -0.284 1.284 14 H -0.256 1.256 15 S 2.599 3.401 16 O -0.995 6.995 17 O -0.980 6.980 18 C -0.589 4.589 19 H 0.142 0.858 20 C -0.103 4.103 21 C -0.108 4.108 22 C -0.135 4.135 23 C 0.096 3.904 24 H 0.068 0.932 25 O -0.404 6.404 26 C 0.013 3.987 27 H 0.068 0.932 28 H 0.027 0.973 29 H 0.060 0.940 30 H 0.027 0.973 31 H 0.081 0.919 32 H 0.118 0.882 33 H 0.094 0.906 34 H 0.007 0.993 35 H 0.029 0.971 36 H 0.257 0.743 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.073 0.927 41 H 0.097 0.903 42 H 0.086 0.914 43 H 0.102 0.898 44 H 0.039 0.961 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.444 17.104 4.184 19.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.292 6.292 3 C -0.043 4.043 4 C 0.002 3.998 5 N -0.820 5.820 6 C 0.152 3.848 7 C -0.519 4.519 8 H 0.080 0.920 9 C -0.196 4.196 10 N -0.585 5.585 11 Si 0.764 3.236 12 H -0.217 1.217 13 H -0.210 1.210 14 H -0.180 1.180 15 S 2.697 3.303 16 O -0.985 6.985 17 O -0.970 6.970 18 C -0.701 4.701 19 H 0.160 0.840 20 C -0.141 4.141 21 C -0.146 4.146 22 C -0.174 4.174 23 C 0.036 3.964 24 H 0.086 0.914 25 O -0.323 6.323 26 C -0.083 4.083 27 H 0.086 0.914 28 H 0.046 0.954 29 H 0.079 0.921 30 H 0.046 0.954 31 H 0.099 0.901 32 H 0.136 0.864 33 H 0.113 0.887 34 H 0.025 0.975 35 H 0.047 0.953 36 H 0.066 0.934 37 H 0.113 0.887 38 H 0.118 0.882 39 H 0.121 0.879 40 H 0.092 0.908 41 H 0.115 0.885 42 H 0.105 0.895 43 H 0.121 0.879 44 H 0.058 0.942 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.990 16.973 3.585 19.099 hybrid contribution -0.948 -0.821 -0.637 1.407 sum 7.042 16.153 2.948 17.866 Atomic orbital electron populations 1.22711 0.82354 1.01833 0.99816 1.88339 1.18856 1.27025 1.94969 1.23113 0.95557 0.85397 1.00190 1.21500 0.93313 1.00592 0.84416 1.57208 1.82705 1.17794 1.24294 1.18593 0.96056 0.74589 0.95554 1.21768 0.95259 0.92740 1.42125 0.91972 1.25559 0.99849 0.97323 0.96856 1.70017 1.32087 1.03132 1.53267 0.85882 0.82234 0.77656 0.77802 1.21725 1.20968 1.18032 1.05128 0.78690 0.73035 0.73483 1.93559 1.80206 1.74217 1.50521 1.93480 1.75473 1.45343 1.82713 1.31560 1.23986 1.08540 1.05988 0.84014 1.22485 0.99084 1.02497 0.90064 1.22289 0.95439 1.00030 0.96839 1.22703 0.96939 1.00394 0.97330 1.22692 0.98489 0.91513 0.83694 0.91386 1.87972 1.85240 1.43331 1.15798 1.23142 1.00762 0.95132 0.89215 0.91376 0.95393 0.92128 0.95429 0.90111 0.86429 0.88731 0.97504 0.95341 0.93385 0.88658 0.88153 0.87909 0.90827 0.88486 0.89535 0.87925 0.94247 0.91009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.04 10.77 113.37 1.22 2.26 16 2 O -0.37 -15.48 6.97 -148.98 -1.04 -16.51 16 3 C 0.04 1.23 6.19 71.98 0.45 1.68 16 4 C 0.13 4.07 5.67 86.38 0.49 4.56 16 5 N -0.98 -39.77 2.53 -519.87 -1.32 -41.09 16 6 C 0.28 14.07 4.97 85.63 0.43 14.50 16 7 C -0.48 -27.47 7.31 25.60 0.19 -27.28 16 8 H 0.06 3.61 6.05 -2.91 -0.02 3.59 16 9 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 10 N -0.94 -57.78 13.29 21.45 0.28 -57.50 16 11 Si 0.94 46.81 29.54 68.60 2.03 48.84 16 12 H -0.29 -14.69 7.11 99.48 0.71 -13.98 16 13 H -0.28 -13.76 7.11 99.48 0.71 -13.06 16 14 H -0.26 -11.93 6.78 99.48 0.67 -11.25 16 15 S 2.60 102.21 4.68 -56.49 -0.26 101.95 16 16 O -0.99 -50.80 17.19 -127.65 -2.19 -52.99 16 17 O -0.98 -37.44 16.35 -127.65 -2.09 -39.52 16 18 C -0.59 -17.32 3.33 31.67 0.11 -17.21 16 19 H 0.14 4.50 8.08 -2.39 -0.02 4.48 16 20 C -0.10 -2.13 6.05 31.88 0.19 -1.94 16 21 C -0.11 -1.72 6.83 31.67 0.22 -1.51 16 22 C -0.14 -2.39 6.62 31.39 0.21 -2.18 16 23 C 0.10 2.50 2.98 31.39 0.09 2.59 16 24 H 0.07 1.73 7.30 -2.39 -0.02 1.71 16 25 O -0.40 -11.78 10.27 -148.98 -1.53 -13.31 16 26 C 0.01 0.28 10.85 113.37 1.23 1.51 16 27 H 0.07 2.51 7.82 -2.39 -0.02 2.49 16 28 H 0.03 0.97 8.12 -2.38 -0.02 0.95 16 29 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.03 1.04 8.02 -2.39 -0.02 1.02 16 31 H 0.08 2.10 8.14 -2.38 -0.02 2.09 16 32 H 0.12 2.80 6.75 -2.39 -0.02 2.78 16 33 H 0.09 2.81 7.99 -2.38 -0.02 2.79 16 34 H 0.01 0.39 7.76 -2.39 -0.02 0.37 16 35 H 0.03 1.49 7.99 -2.39 -0.02 1.47 16 36 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 37 H 0.09 1.71 7.24 -2.39 -0.02 1.70 16 38 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 40 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.09 1.43 7.96 -2.39 -0.02 1.42 16 43 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.04 0.87 8.10 -2.39 -0.02 0.85 16 45 H 0.07 1.10 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -79.04 371.47 0.08 -78.96 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: 0.92 Total: 13.75 kcal Atomic # 6 Polarization: -27.85 SS G_CDS: 5.28 Total: -22.58 kcal Atomic # 7 Polarization: -97.55 SS G_CDS: -1.03 Total: -98.59 kcal Atomic # 8 Polarization: -115.49 SS G_CDS: -6.85 Total: -122.34 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.84 kcal Atomic # 16 Polarization: 102.21 SS G_CDS: -0.26 Total: 101.95 kcal Total: -79.04 0.08 -78.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601336680.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.928 kcal (2) G-P(sol) polarization free energy of solvation -79.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds