Wall clock time and date at job start Fri Apr 10 2020 18:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.46493 * 120.00028 * 2 1 4 4 C 1.52999 * 110.45867 * 246.11520 * 3 2 1 5 5 O 1.42898 * 109.47480 * 184.69052 * 4 3 2 6 6 C 1.54509 * 110.51198 * 123.51128 * 3 2 1 7 7 C 1.54480 * 104.06384 * 241.35378 * 6 3 2 8 8 O 1.44428 * 104.80448 * 23.97695 * 7 6 3 9 9 C 1.44426 * 105.27535 * 319.49204 * 8 7 6 10 10 S 1.65596 * 119.99837 * 179.97438 * 2 1 3 11 11 O 1.42102 * 104.28103 * 327.42284 * 10 2 1 12 12 O 1.42103 * 104.27721 * 199.56912 * 10 2 1 13 13 C 1.81402 * 104.45181 * 83.49532 * 10 2 1 14 14 C 1.52993 * 109.47041 * 179.97438 * 13 10 2 15 15 C 1.52998 * 109.47617 * 299.99732 * 14 13 10 16 16 C 1.52997 * 109.47333 * 60.00505 * 14 13 10 17 17 C 1.50711 * 109.46879 * 180.02562 * 14 13 10 18 18 H 1.08000 * 119.99663 * 359.90898 * 17 14 13 19 19 C 1.37870 * 119.99704 * 179.90922 * 17 14 13 20 20 N 1.31521 * 119.99514 * 189.47458 * 19 17 14 21 21 Si 1.86795 * 120.00526 * 9.47619 * 19 17 14 22 22 H 1.48501 * 109.47284 * 93.67113 * 21 19 17 23 23 H 1.48506 * 109.47119 * 213.67527 * 21 19 17 24 24 H 1.48507 * 109.46877 * 333.67187 * 21 19 17 25 25 H 1.09003 * 109.46927 * 275.77160 * 1 2 3 26 26 H 1.08995 * 109.46644 * 35.77177 * 1 2 3 27 27 H 1.08996 * 109.47132 * 155.77120 * 1 2 3 28 28 H 1.09000 * 109.47005 * 304.69517 * 4 3 2 29 29 H 1.09005 * 109.47143 * 64.68838 * 4 3 2 30 30 H 0.96705 * 113.99890 * 180.02562 * 5 4 3 31 31 H 1.08993 * 110.51340 * 359.97438 * 6 3 2 32 32 H 1.09001 * 110.51164 * 122.57394 * 6 3 2 33 33 H 1.08997 * 110.37298 * 142.80806 * 7 6 3 34 34 H 1.09004 * 110.37355 * 265.03748 * 7 6 3 35 35 H 1.09005 * 110.36801 * 281.67724 * 9 8 7 36 36 H 1.08995 * 110.37397 * 159.34195 * 9 8 7 37 37 H 1.09002 * 109.46624 * 300.00139 * 13 10 2 38 38 H 1.09000 * 109.46696 * 59.99418 * 13 10 2 39 39 H 1.09007 * 109.46456 * 70.59600 * 15 14 13 40 40 H 1.09002 * 109.47232 * 190.59243 * 15 14 13 41 41 H 1.09003 * 109.47215 * 310.60040 * 15 14 13 42 42 H 1.08999 * 109.47394 * 59.99488 * 16 14 13 43 43 H 1.08995 * 109.47449 * 179.97438 * 16 14 13 44 44 H 1.09002 * 109.46632 * 299.99881 * 16 14 13 45 45 H 0.96999 * 119.99859 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.9676 1.4416 -1.3107 5 8 3.7591 2.6295 -1.2451 6 6 3.1602 1.3380 1.2066 7 6 2.6605 2.5553 2.0159 8 8 1.2722 2.7002 1.6453 9 6 1.2302 2.4522 0.2231 10 16 2.2930 -1.4341 0.0006 11 8 1.4633 -2.3176 0.7425 12 8 3.5920 -1.0887 0.4618 13 6 2.3470 -1.9265 -1.7444 14 6 3.0965 -3.2537 -1.8769 15 6 4.5231 -3.0888 -1.3492 16 6 2.3737 -4.3307 -1.0654 17 6 3.1419 -3.6624 -3.3268 18 1 2.6808 -3.0386 -4.0783 19 6 3.7719 -4.8325 -3.6937 20 7 3.9762 -5.0985 -4.9655 21 14 4.3353 -6.0403 -2.3848 22 1 3.2791 -7.0608 -2.1654 23 1 5.5839 -6.7082 -2.8321 24 1 4.5908 -5.3117 -1.1162 25 1 -0.3633 0.1033 1.0225 26 1 -0.3632 0.8338 -0.6007 27 1 -0.3633 -0.9371 -0.4217 28 1 3.6172 0.5803 -1.4668 29 1 2.2628 1.5198 -2.1386 30 1 4.2752 2.8029 -2.0443 31 1 3.0908 0.4286 1.8033 32 1 4.1847 1.4955 0.8693 33 1 2.7497 2.3627 3.0850 34 1 3.2228 3.4486 1.7438 35 1 1.5718 3.3301 -0.3254 36 1 0.2206 2.1804 -0.0851 37 1 1.3306 -2.0435 -2.1205 38 1 2.8622 -1.1593 -2.3225 39 1 4.4989 -2.9792 -0.2650 40 1 5.1117 -3.9677 -1.6125 41 1 4.9748 -2.2022 -1.7941 42 1 1.3574 -4.4482 -1.4414 43 1 2.9074 -5.2764 -1.1601 44 1 2.3413 -4.0348 -0.0168 45 1 4.4191 -5.9219 -5.2237 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601426413.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:45 Heat of formation + Delta-G solvation = -123.126973 kcal Electronic energy + Delta-G solvation = -28339.734228 eV Core-core repulsion = 24486.630127 eV Total energy + Delta-G solvation = -3853.104101 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.22899 -36.98951 -36.83776 -36.70456 -35.76086 -35.42920 -32.00139 -31.43269 -29.25143 -27.72858 -26.67928 -26.44875 -25.31836 -25.04848 -22.56582 -20.91110 -19.63982 -18.52739 -17.86142 -17.22114 -16.58388 -16.34778 -16.14069 -15.90637 -15.44087 -15.31694 -15.00340 -14.64687 -14.34367 -13.83275 -13.49143 -13.40269 -13.24692 -13.13069 -12.95715 -12.57618 -12.45824 -12.15564 -11.93542 -11.81213 -11.66985 -11.64881 -11.30751 -11.15588 -11.07213 -10.90342 -10.86059 -10.78443 -10.26139 -10.20253 -10.08183 -10.01264 -9.74680 -9.23365 -8.95902 -8.73615 -8.56821 -6.23611 -4.23723 0.54333 2.72461 3.20478 3.29455 3.34224 3.69080 4.02594 4.10151 4.26336 4.29018 4.42136 4.64440 4.81166 4.86855 5.04660 5.09082 5.14796 5.21124 5.23135 5.27484 5.34033 5.41601 5.52478 5.64539 5.68017 5.75079 5.80085 5.91075 6.03721 6.14213 6.23437 6.25554 6.35477 6.40836 6.46962 6.65130 6.71965 6.79415 7.05568 7.22827 7.37777 7.54931 8.32709 8.76792 9.38937 10.88848 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.023600 B = 0.004603 C = 0.004382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.136958 B = 6081.661617 C = 6387.594236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.996 5.996 3 C 0.153 3.847 4 C 0.063 3.937 5 O -0.563 6.563 6 C -0.150 4.150 7 C 0.046 3.954 8 O -0.373 6.373 9 C 0.047 3.953 10 S 2.585 3.415 11 O -0.957 6.957 12 O -0.953 6.953 13 C -0.578 4.578 14 C 0.054 3.946 15 C -0.172 4.172 16 C -0.179 4.179 17 C -0.506 4.506 18 H 0.078 0.922 19 C 0.077 3.923 20 N -0.892 5.892 21 Si 0.863 3.137 22 H -0.282 1.282 23 H -0.297 1.297 24 H -0.235 1.235 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.386 0.614 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.063 0.937 35 H 0.078 0.922 36 H 0.105 0.895 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.038 0.962 40 H 0.069 0.931 41 H 0.056 0.944 42 H 0.063 0.937 43 H 0.053 0.947 44 H 0.047 0.953 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.212 15.102 8.201 17.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.833 5.833 3 C 0.065 3.935 4 C -0.017 4.017 5 O -0.368 6.368 6 C -0.188 4.188 7 C -0.031 4.031 8 O -0.291 6.291 9 C -0.031 4.031 10 S 2.684 3.316 11 O -0.948 6.948 12 O -0.943 6.943 13 C -0.710 4.710 14 C 0.051 3.949 15 C -0.230 4.230 16 C -0.236 4.236 17 C -0.545 4.545 18 H 0.096 0.904 19 C -0.126 4.126 20 N -0.529 5.529 21 Si 0.694 3.306 22 H -0.209 1.209 23 H -0.225 1.225 24 H -0.161 1.161 25 H 0.082 0.918 26 H 0.091 0.909 27 H 0.095 0.905 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.234 0.766 31 H 0.106 0.894 32 H 0.116 0.884 33 H 0.107 0.893 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.122 0.878 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.057 0.943 40 H 0.088 0.912 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.071 0.929 44 H 0.066 0.934 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.281 14.675 9.600 18.051 hybrid contribution 0.523 -0.888 -1.039 1.463 sum -3.758 13.788 8.561 16.658 Atomic orbital electron populations 1.21584 0.78531 1.02815 1.02779 1.57736 1.15067 1.20183 1.90321 1.21293 0.92294 0.84942 0.95017 1.22502 0.94142 0.88652 0.96356 1.86370 1.63103 1.43246 1.44098 1.23440 1.00329 0.99547 0.95528 1.23487 0.82270 0.97383 0.99981 1.89098 1.25976 1.91894 1.22135 1.23843 1.00230 0.95541 0.83502 1.06024 0.73968 0.72353 0.79248 1.93558 1.68575 1.63390 1.69234 1.93574 1.39191 1.81886 1.79662 1.30513 1.10093 1.09302 1.21130 1.18242 0.90615 0.87242 0.98787 1.22768 0.98827 1.02839 0.98536 1.22774 1.01660 1.00455 0.98675 1.20654 1.37194 1.07711 0.88917 0.90419 1.24969 0.94624 0.97857 0.95186 1.69901 1.41897 1.25432 1.15621 0.87659 0.77939 0.81426 0.83596 1.20890 1.22462 1.16059 0.91764 0.90871 0.90516 0.92238 0.92229 0.76590 0.89381 0.88360 0.89271 0.91857 0.90390 0.87769 0.85691 0.85836 0.94300 0.91237 0.92464 0.91817 0.92859 0.93408 0.92403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.95 9.23 59.85 0.55 1.51 16 2 N -1.00 -13.41 2.99 -106.15 -0.32 -13.73 16 3 C 0.15 1.92 0.83 -130.25 -0.11 1.82 16 4 C 0.06 0.71 5.89 37.16 0.22 0.93 16 5 O -0.56 -5.56 12.07 -35.23 -0.43 -5.99 16 6 C -0.15 -2.03 4.68 -25.16 -0.12 -2.15 16 7 C 0.05 0.54 7.63 37.93 0.29 0.83 16 8 O -0.37 -4.83 11.65 -35.23 -0.41 -5.24 16 9 C 0.05 0.52 6.35 37.94 0.24 0.76 16 10 S 2.59 44.20 3.53 -107.50 -0.38 43.82 16 11 O -0.96 -18.64 14.86 -57.54 -0.85 -19.50 16 12 O -0.95 -17.55 11.71 -57.54 -0.67 -18.22 16 13 C -0.58 -10.24 5.05 37.15 0.19 -10.05 16 14 C 0.05 1.20 0.52 -155.66 -0.08 1.12 16 15 C -0.17 -3.75 6.79 37.16 0.25 -3.50 16 16 C -0.18 -3.94 7.30 37.16 0.27 -3.67 16 17 C -0.51 -13.25 8.62 -34.44 -0.30 -13.55 16 18 H 0.08 2.16 7.99 -52.49 -0.42 1.74 16 19 C 0.08 2.11 5.37 -17.82 -0.10 2.01 16 20 N -0.89 -26.13 13.96 55.43 0.77 -25.35 16 21 Si 0.86 20.88 22.78 -169.99 -3.87 17.01 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.30 -7.23 7.11 56.52 0.40 -6.82 16 24 H -0.24 -5.29 4.31 56.52 0.24 -5.05 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.07 0.58 5.99 -51.93 -0.31 0.27 16 27 H 0.08 0.79 7.77 -51.93 -0.40 0.39 16 28 H 0.06 0.74 5.94 -51.93 -0.31 0.43 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.39 2.21 9.12 45.56 0.42 2.62 16 31 H 0.09 1.35 6.22 -51.93 -0.32 1.03 16 32 H 0.10 1.34 7.26 -51.93 -0.38 0.96 16 33 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.79 7.36 -51.93 -0.38 0.41 16 36 H 0.10 0.96 5.02 -51.93 -0.26 0.70 16 37 H 0.12 2.00 8.14 -51.92 -0.42 1.57 16 38 H 0.12 1.97 6.86 -51.92 -0.36 1.61 16 39 H 0.04 0.79 6.24 -51.92 -0.32 0.47 16 40 H 0.07 1.56 3.84 -51.93 -0.20 1.37 16 41 H 0.06 1.15 8.11 -51.93 -0.42 0.73 16 42 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.05 1.21 2.65 -51.93 -0.14 1.07 16 44 H 0.05 1.00 5.46 -51.93 -0.28 0.71 16 45 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 333.32 15.07 5.02 5.02 Total: -1.00 -33.44 333.32 -5.74 -39.19 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -5.92 Total: 6.94 kcal Atomic # 6 Polarization: -25.26 SS G_CDS: 1.31 Total: -23.95 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: 0.46 Total: -39.08 kcal Atomic # 8 Polarization: -46.57 SS G_CDS: -2.36 Total: -48.94 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -3.87 Total: 17.01 kcal Atomic # 16 Polarization: 44.20 SS G_CDS: -0.38 Total: 43.82 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.44 -5.74 -39.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601426413.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.939 kcal (2) G-P(sol) polarization free energy of solvation -33.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds