Wall clock time and date at job start Fri Apr 10 2020 18:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.46493 * 120.00028 * 2 1 4 4 C 1.52999 * 110.45867 * 246.11520 * 3 2 1 5 5 O 1.42898 * 109.47480 * 184.69052 * 4 3 2 6 6 C 1.54509 * 110.51198 * 123.51128 * 3 2 1 7 7 C 1.54480 * 104.06384 * 241.35378 * 6 3 2 8 8 O 1.44428 * 104.80448 * 23.97695 * 7 6 3 9 9 C 1.44426 * 105.27535 * 319.49204 * 8 7 6 10 10 S 1.65596 * 119.99837 * 179.97438 * 2 1 3 11 11 O 1.42102 * 104.28103 * 327.42284 * 10 2 1 12 12 O 1.42103 * 104.27721 * 199.56912 * 10 2 1 13 13 C 1.81402 * 104.45181 * 83.49532 * 10 2 1 14 14 C 1.52993 * 109.47041 * 179.97438 * 13 10 2 15 15 C 1.52998 * 109.47617 * 299.99732 * 14 13 10 16 16 C 1.52997 * 109.47333 * 60.00505 * 14 13 10 17 17 C 1.50711 * 109.46879 * 180.02562 * 14 13 10 18 18 H 1.08000 * 119.99663 * 359.90898 * 17 14 13 19 19 C 1.37870 * 119.99704 * 179.90922 * 17 14 13 20 20 N 1.31521 * 119.99514 * 189.47458 * 19 17 14 21 21 Si 1.86795 * 120.00526 * 9.47619 * 19 17 14 22 22 H 1.48501 * 109.47284 * 93.67113 * 21 19 17 23 23 H 1.48506 * 109.47119 * 213.67527 * 21 19 17 24 24 H 1.48507 * 109.46877 * 333.67187 * 21 19 17 25 25 H 1.09003 * 109.46927 * 275.77160 * 1 2 3 26 26 H 1.08995 * 109.46644 * 35.77177 * 1 2 3 27 27 H 1.08996 * 109.47132 * 155.77120 * 1 2 3 28 28 H 1.09000 * 109.47005 * 304.69517 * 4 3 2 29 29 H 1.09005 * 109.47143 * 64.68838 * 4 3 2 30 30 H 0.96705 * 113.99890 * 180.02562 * 5 4 3 31 31 H 1.08993 * 110.51340 * 359.97438 * 6 3 2 32 32 H 1.09001 * 110.51164 * 122.57394 * 6 3 2 33 33 H 1.08997 * 110.37298 * 142.80806 * 7 6 3 34 34 H 1.09004 * 110.37355 * 265.03748 * 7 6 3 35 35 H 1.09005 * 110.36801 * 281.67724 * 9 8 7 36 36 H 1.08995 * 110.37397 * 159.34195 * 9 8 7 37 37 H 1.09002 * 109.46624 * 300.00139 * 13 10 2 38 38 H 1.09000 * 109.46696 * 59.99418 * 13 10 2 39 39 H 1.09007 * 109.46456 * 70.59600 * 15 14 13 40 40 H 1.09002 * 109.47232 * 190.59243 * 15 14 13 41 41 H 1.09003 * 109.47215 * 310.60040 * 15 14 13 42 42 H 1.08999 * 109.47394 * 59.99488 * 16 14 13 43 43 H 1.08995 * 109.47449 * 179.97438 * 16 14 13 44 44 H 1.09002 * 109.46632 * 299.99881 * 16 14 13 45 45 H 0.96999 * 119.99859 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.9676 1.4416 -1.3107 5 8 3.7591 2.6295 -1.2451 6 6 3.1602 1.3380 1.2066 7 6 2.6605 2.5553 2.0159 8 8 1.2722 2.7002 1.6453 9 6 1.2302 2.4522 0.2231 10 16 2.2930 -1.4341 0.0006 11 8 1.4633 -2.3176 0.7425 12 8 3.5920 -1.0887 0.4618 13 6 2.3470 -1.9265 -1.7444 14 6 3.0965 -3.2537 -1.8769 15 6 4.5231 -3.0888 -1.3492 16 6 2.3737 -4.3307 -1.0654 17 6 3.1419 -3.6624 -3.3268 18 1 2.6808 -3.0386 -4.0783 19 6 3.7719 -4.8325 -3.6937 20 7 3.9762 -5.0985 -4.9655 21 14 4.3353 -6.0403 -2.3848 22 1 3.2791 -7.0608 -2.1654 23 1 5.5839 -6.7082 -2.8321 24 1 4.5908 -5.3117 -1.1162 25 1 -0.3633 0.1033 1.0225 26 1 -0.3632 0.8338 -0.6007 27 1 -0.3633 -0.9371 -0.4217 28 1 3.6172 0.5803 -1.4668 29 1 2.2628 1.5198 -2.1386 30 1 4.2752 2.8029 -2.0443 31 1 3.0908 0.4286 1.8033 32 1 4.1847 1.4955 0.8693 33 1 2.7497 2.3627 3.0850 34 1 3.2228 3.4486 1.7438 35 1 1.5718 3.3301 -0.3254 36 1 0.2206 2.1804 -0.0851 37 1 1.3306 -2.0435 -2.1205 38 1 2.8622 -1.1593 -2.3225 39 1 4.4989 -2.9792 -0.2650 40 1 5.1117 -3.9677 -1.6125 41 1 4.9748 -2.2022 -1.7941 42 1 1.3574 -4.4482 -1.4414 43 1 2.9074 -5.2764 -1.1601 44 1 2.3413 -4.0348 -0.0168 45 1 4.4191 -5.9219 -5.2237 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601426413.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:44 Heat of formation + Delta-G solvation = -151.644708 kcal Electronic energy + Delta-G solvation = -28340.970849 eV Core-core repulsion = 24486.630127 eV Total energy + Delta-G solvation = -3854.340723 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.14912 -38.56767 -38.28266 -37.62296 -37.03070 -36.51882 -34.05439 -32.37807 -30.14826 -29.18739 -28.18083 -27.65995 -27.10098 -26.14314 -23.49915 -22.07405 -21.29780 -19.70759 -18.85805 -18.42551 -18.10696 -17.51312 -17.46043 -17.05041 -16.95434 -16.61680 -16.10980 -15.54142 -15.37078 -15.04959 -15.02862 -14.88666 -14.72397 -14.43209 -14.20173 -14.01356 -13.92436 -13.57871 -13.24441 -13.12318 -12.84824 -12.75482 -12.71479 -12.63558 -12.60014 -12.23658 -11.99999 -11.98989 -11.87422 -11.74348 -11.69825 -11.03119 -10.89508 -10.73082 -10.64285 -10.48207 -10.07185 -8.35250 -6.36993 -0.78754 1.27874 1.35079 1.40197 1.56724 2.28190 2.74078 2.82239 2.99832 3.05862 3.31449 3.35364 3.67880 3.74578 3.90407 3.97048 4.00172 4.20286 4.24311 4.27603 4.42047 4.44274 4.50362 4.52561 4.57221 4.58503 4.66716 4.72120 4.79872 4.84007 4.86302 4.91358 5.00038 5.05691 5.12097 5.21523 5.34118 5.49474 5.52602 5.59318 5.81128 6.24187 6.66815 6.82921 7.28708 8.80391 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.023600 B = 0.004603 C = 0.004382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.136958 B = 6081.661617 C = 6387.594236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.989 5.989 3 C 0.145 3.855 4 C 0.062 3.938 5 O -0.569 6.569 6 C -0.156 4.156 7 C 0.047 3.953 8 O -0.388 6.388 9 C 0.049 3.951 10 S 2.603 3.397 11 O -0.982 6.982 12 O -0.969 6.969 13 C -0.584 4.584 14 C 0.045 3.955 15 C -0.177 4.177 16 C -0.185 4.185 17 C -0.497 4.497 18 H 0.052 0.948 19 C 0.026 3.974 20 N -0.938 5.938 21 Si 0.903 3.097 22 H -0.280 1.280 23 H -0.302 1.302 24 H -0.209 1.209 25 H 0.063 0.937 26 H 0.108 0.892 27 H 0.081 0.919 28 H 0.043 0.957 29 H 0.083 0.917 30 H 0.404 0.596 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.124 0.876 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.050 0.950 40 H 0.058 0.942 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.045 0.955 44 H 0.059 0.941 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.035 16.858 9.219 19.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.828 5.828 3 C 0.057 3.943 4 C -0.018 4.018 5 O -0.378 6.378 6 C -0.195 4.195 7 C -0.030 4.030 8 O -0.307 6.307 9 C -0.029 4.029 10 S 2.701 3.299 11 O -0.973 6.973 12 O -0.959 6.959 13 C -0.716 4.716 14 C 0.042 3.958 15 C -0.234 4.234 16 C -0.241 4.241 17 C -0.536 4.536 18 H 0.070 0.930 19 C -0.172 4.172 20 N -0.578 5.578 21 Si 0.732 3.268 22 H -0.207 1.207 23 H -0.230 1.230 24 H -0.132 1.132 25 H 0.082 0.918 26 H 0.126 0.874 27 H 0.100 0.900 28 H 0.061 0.939 29 H 0.101 0.899 30 H 0.255 0.745 31 H 0.083 0.917 32 H 0.111 0.889 33 H 0.115 0.885 34 H 0.095 0.905 35 H 0.109 0.891 36 H 0.142 0.858 37 H 0.159 0.841 38 H 0.157 0.843 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.064 0.936 44 H 0.078 0.922 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.098 16.436 10.620 20.222 hybrid contribution 0.741 -1.293 -1.374 2.027 sum -4.358 15.143 9.245 18.270 Atomic orbital electron populations 1.21909 0.76787 1.04668 1.03658 1.57426 1.16106 1.19273 1.89971 1.21504 0.92679 0.84809 0.95319 1.22456 0.94409 0.88616 0.96278 1.86330 1.63356 1.42410 1.45660 1.23435 1.00587 0.99344 0.96137 1.23538 0.82031 0.97097 1.00289 1.89081 1.26391 1.91943 1.23270 1.23990 1.00948 0.95161 0.82773 1.05268 0.73541 0.72776 0.78348 1.93521 1.69128 1.65025 1.69594 1.93552 1.40448 1.82252 1.79670 1.30515 1.10654 1.07442 1.22944 1.18217 0.91739 0.89652 0.96148 1.22774 0.98384 1.02845 0.99397 1.22810 1.01950 0.99941 0.99449 1.20918 1.35273 1.06681 0.90750 0.92988 1.25648 0.95313 0.99684 0.96582 1.70019 1.43992 1.26211 1.17546 0.87000 0.77299 0.79719 0.82824 1.20742 1.23016 1.13248 0.91816 0.87422 0.90032 0.93862 0.89928 0.74524 0.91650 0.88947 0.88493 0.90518 0.89089 0.85802 0.84115 0.84268 0.93134 0.92295 0.91486 0.91144 0.93646 0.92225 0.92529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.38 9.23 127.77 1.18 2.56 16 2 N -0.99 -24.23 2.99 -489.75 -1.46 -25.70 16 3 C 0.15 3.28 0.83 4.62 0.00 3.29 16 4 C 0.06 1.24 5.89 71.98 0.42 1.66 16 5 O -0.57 -9.75 12.07 -148.98 -1.80 -11.55 16 6 C -0.16 -4.01 4.68 31.61 0.15 -3.87 16 7 C 0.05 1.02 7.63 72.49 0.55 1.57 16 8 O -0.39 -9.03 11.65 -148.98 -1.74 -10.77 16 9 C 0.05 0.92 6.35 72.49 0.46 1.38 16 10 S 2.60 84.43 3.53 -56.49 -0.20 84.23 16 11 O -0.98 -36.68 14.86 -127.65 -1.90 -38.58 16 12 O -0.97 -34.48 11.71 -127.65 -1.49 -35.97 16 13 C -0.58 -19.68 5.05 71.98 0.36 -19.32 16 14 C 0.04 1.94 0.52 -52.93 -0.03 1.91 16 15 C -0.18 -7.44 6.79 71.98 0.49 -6.95 16 16 C -0.18 -7.85 7.30 71.98 0.53 -7.32 16 17 C -0.50 -26.03 8.62 25.60 0.22 -25.81 16 18 H 0.05 2.93 7.99 -2.91 -0.02 2.90 16 19 C 0.03 1.45 5.37 84.65 0.45 1.91 16 20 N -0.94 -56.13 13.96 21.45 0.30 -55.83 16 21 Si 0.90 42.70 22.78 68.60 1.56 44.27 16 22 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 23 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 24 H -0.21 -8.94 4.31 99.48 0.43 -8.51 16 25 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.11 1.25 5.99 -2.39 -0.01 1.24 16 27 H 0.08 1.46 7.77 -2.39 -0.02 1.45 16 28 H 0.04 1.00 5.94 -2.39 -0.01 0.98 16 29 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 30 H 0.40 3.57 9.12 -74.05 -0.68 2.89 16 31 H 0.06 1.97 6.22 -2.39 -0.01 1.95 16 32 H 0.09 2.43 7.26 -2.39 -0.02 2.41 16 33 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.09 1.50 7.36 -2.38 -0.02 1.49 16 36 H 0.12 1.77 5.02 -2.39 -0.01 1.76 16 37 H 0.14 4.22 8.14 -2.39 -0.02 4.20 16 38 H 0.14 4.18 6.86 -2.39 -0.02 4.17 16 39 H 0.05 1.99 6.24 -2.38 -0.01 1.97 16 40 H 0.06 2.57 3.84 -2.39 -0.01 2.56 16 41 H 0.07 2.63 8.11 -2.39 -0.02 2.61 16 42 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 43 H 0.05 1.98 2.65 -2.39 -0.01 1.97 16 44 H 0.06 2.38 5.46 -2.39 -0.01 2.37 16 45 H 0.27 15.08 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -71.86 333.32 -1.86 -73.72 By element: Atomic # 1 Polarization: 25.10 SS G_CDS: 0.07 Total: 25.17 kcal Atomic # 6 Polarization: -53.79 SS G_CDS: 4.80 Total: -49.00 kcal Atomic # 7 Polarization: -80.36 SS G_CDS: -1.16 Total: -81.53 kcal Atomic # 8 Polarization: -89.94 SS G_CDS: -6.92 Total: -96.87 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 1.56 Total: 44.27 kcal Atomic # 16 Polarization: 84.43 SS G_CDS: -0.20 Total: 84.23 kcal Total: -71.86 -1.86 -73.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601426413.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.921 kcal (2) G-P(sol) polarization free energy of solvation -71.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds