Wall clock time and date at job start Fri Apr 10 2020 18:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45197 * 109.46986 * 2 1 4 4 C 1.34233 * 116.99869 * 180.02562 * 3 2 1 5 5 O 1.20822 * 120.00162 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99922 * 179.97438 * 4 3 2 7 7 C 1.53004 * 109.46929 * 84.99952 * 6 4 3 8 8 O 1.42901 * 109.47017 * 325.00253 * 6 4 3 9 9 C 1.53000 * 109.47238 * 205.00261 * 6 4 3 10 10 N 1.46497 * 109.47087 * 185.00092 * 9 6 4 11 11 C 1.34774 * 120.00234 * 179.97438 * 10 9 6 12 12 O 1.21618 * 119.99610 * 359.97438 * 11 10 9 13 13 C 1.47428 * 120.00477 * 180.02562 * 11 10 9 14 14 C 1.39233 * 120.27966 * 357.06144 * 13 11 10 15 15 C 1.38226 * 120.08965 * 180.28388 * 14 13 11 16 16 C 1.38825 * 120.67689 * 359.70940 * 15 14 13 17 17 C 1.37607 * 120.57039 * 0.02562 * 16 15 14 18 18 C 1.40701 * 119.87939 * 359.97438 * 17 16 15 19 19 C 1.40890 * 120.32862 * 180.02562 * 18 17 16 20 20 H 1.07996 * 120.00394 * 145.85600 * 19 18 17 21 21 C 1.40275 * 120.00033 * 325.85922 * 19 18 17 22 22 N 1.30634 * 119.99942 * 340.94548 * 21 19 18 23 23 Si 1.86793 * 120.00223 * 160.94696 * 21 19 18 24 24 H 1.48511 * 109.47229 * 179.97438 * 23 21 19 25 25 H 1.48495 * 109.47369 * 299.99835 * 23 21 19 26 26 H 1.48504 * 109.47149 * 60.00271 * 23 21 19 27 27 H 1.08992 * 109.47406 * 59.99773 * 1 2 3 28 28 H 1.09004 * 109.47322 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46978 * 299.99396 * 1 2 3 30 30 H 1.08998 * 109.47172 * 240.00190 * 2 1 3 31 31 H 1.09001 * 109.47316 * 120.00118 * 2 1 3 32 32 H 1.08999 * 109.46927 * 179.97438 * 7 6 4 33 33 H 1.09002 * 109.47326 * 300.00410 * 7 6 4 34 34 H 1.08999 * 109.46860 * 59.99995 * 7 6 4 35 35 H 0.96698 * 114.00345 * 299.99480 * 8 6 4 36 36 H 1.08997 * 109.47147 * 64.99946 * 9 6 4 37 37 H 1.09003 * 109.46728 * 304.99736 * 9 6 4 38 38 H 0.97004 * 120.00040 * 0.02562 * 10 9 6 39 39 H 1.07998 * 119.95559 * 359.97438 * 14 13 11 40 40 H 1.07998 * 119.65979 * 179.74311 * 15 14 13 41 41 H 1.07996 * 119.71807 * 180.02562 * 16 15 14 42 42 H 1.07995 * 120.05614 * 180.02562 * 17 16 15 43 43 H 0.97001 * 119.99671 * 354.76570 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5867 -0.0015 6 6 3.9207 2.9374 -0.0012 7 6 3.9999 3.4572 1.4357 8 8 3.0826 3.7992 -0.7738 9 6 5.3234 2.9089 -0.6113 10 7 5.9300 4.2381 -0.5036 11 6 7.1733 4.4519 -0.9776 12 8 7.7920 3.5412 -1.4944 13 6 7.7840 5.7893 -0.8686 14 6 7.0592 6.8505 -0.3327 15 6 7.6336 8.1042 -0.2378 16 6 8.9358 8.3210 -0.6673 17 6 9.6789 7.2907 -1.1963 18 6 9.1177 6.0050 -1.3040 19 6 9.8703 4.9432 -1.8437 20 1 9.7370 3.9402 -1.4661 21 6 10.7928 5.1887 -2.8715 22 7 10.7047 6.2822 -3.5807 23 14 12.1471 3.9521 -3.2261 24 1 12.9827 4.4423 -4.3517 25 1 12.9932 3.7843 -2.0174 26 1 11.5418 2.6463 -3.5919 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 4.4169 4.4642 1.4353 33 1 3.0005 3.4775 1.8704 34 1 4.6391 2.7998 2.0251 35 1 2.9865 3.5298 -1.6976 36 1 5.2572 2.6238 -1.6613 37 1 5.9377 2.1847 -0.0762 38 1 5.4369 4.9641 -0.0903 39 1 6.0451 6.6950 0.0047 40 1 7.0636 8.9233 0.1752 41 1 9.3694 9.3067 -0.5856 42 1 10.6913 7.4686 -1.5275 43 1 9.9583 6.8874 -3.4482 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601440773.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:53 Heat of formation + Delta-G solvation = -158.249618 kcal Electronic energy + Delta-G solvation = -27033.626348 eV Core-core repulsion = 23043.555263 eV Total energy + Delta-G solvation = -3990.071085 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.09048 -39.19966 -37.97241 -36.88159 -36.76036 -34.24105 -33.66463 -32.11786 -31.35294 -29.97436 -29.34197 -26.87088 -25.37209 -24.70005 -22.93912 -22.09140 -20.97431 -20.54096 -19.68893 -18.67296 -18.11057 -17.19008 -17.02336 -16.72159 -15.46946 -15.24520 -15.05855 -14.68981 -14.43358 -14.31981 -13.99977 -13.90641 -13.70886 -13.50141 -13.14976 -12.80034 -12.70219 -12.47536 -12.40466 -12.26836 -12.15341 -12.09075 -11.81923 -11.67279 -11.13588 -10.98955 -10.92057 -10.86090 -10.75165 -10.36361 -10.23900 -10.16045 -9.62584 -9.08504 -8.56556 -8.48235 -7.80279 -7.61536 -7.15348 -4.47264 1.80651 2.18445 2.22430 2.73456 3.20941 3.31404 3.41455 3.68111 3.89558 4.02805 4.05345 4.24710 4.42660 4.53725 4.58829 4.62262 4.64549 4.90412 5.26161 5.37421 5.40432 5.42449 5.45123 5.59433 5.66388 5.73981 5.83739 5.87071 6.04884 6.09995 6.16921 6.48160 6.70901 6.92648 6.99018 7.11015 7.26739 7.46483 7.48480 7.59298 7.71484 7.87784 8.07411 8.20068 8.31841 8.71952 8.84992 9.30657 10.03606 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.017113 B = 0.003133 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.793780 B = 8934.055031 C =10208.989399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.345 6.345 4 C 0.441 3.559 5 O -0.492 6.492 6 C 0.141 3.859 7 C -0.141 4.141 8 O -0.532 6.532 9 C 0.112 3.888 10 N -0.742 5.742 11 C 0.564 3.436 12 O -0.535 6.535 13 C -0.265 4.265 14 C -0.042 4.042 15 C -0.259 4.259 16 C -0.075 4.075 17 C -0.200 4.200 18 C 0.121 3.879 19 C -0.466 4.466 20 H 0.106 0.894 21 C 0.031 3.969 22 N -0.793 5.793 23 Si 1.070 2.930 24 H -0.275 1.275 25 H -0.274 1.274 26 H -0.273 1.273 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.386 0.614 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.396 0.604 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.107 0.893 43 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.285 -6.822 6.458 18.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.017 4.017 3 O -0.262 6.262 4 C 0.282 3.718 5 O -0.379 6.379 6 C 0.098 3.902 7 C -0.198 4.198 8 O -0.339 6.339 9 C -0.013 4.013 10 N -0.399 5.399 11 C 0.359 3.641 12 O -0.413 6.413 13 C -0.270 4.270 14 C -0.061 4.061 15 C -0.278 4.278 16 C -0.094 4.094 17 C -0.219 4.219 18 C 0.116 3.884 19 C -0.492 4.492 20 H 0.123 0.877 21 C -0.191 4.191 22 N -0.416 5.416 23 Si 0.893 3.107 24 H -0.199 1.199 25 H -0.199 1.199 26 H -0.198 1.198 27 H 0.087 0.913 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.235 0.765 36 H 0.088 0.912 37 H 0.104 0.896 38 H 0.232 0.768 39 H 0.109 0.891 40 H 0.112 0.888 41 H 0.111 0.889 42 H 0.125 0.875 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.349 -7.734 5.645 17.250 hybrid contribution -1.750 0.249 0.625 1.875 sum -16.099 -7.484 6.270 18.829 Atomic orbital electron populations 1.21798 0.92409 1.02978 1.03680 1.23100 0.95582 0.80283 1.02744 1.86588 1.23947 1.32247 1.83399 1.24589 0.81145 0.93115 0.72972 1.90723 1.60400 1.42760 1.44007 1.21341 0.89816 0.83172 0.95907 1.21811 1.03915 1.03458 0.90628 1.86613 1.69127 1.51896 1.26225 1.21537 0.90608 0.87855 1.01279 1.45913 1.17899 1.10713 1.65391 1.18398 0.79390 0.89162 0.77194 1.90697 1.61449 1.45164 1.43985 1.19325 0.95850 0.92067 1.19747 1.20723 0.96564 0.93105 0.95736 1.20248 0.97131 0.96352 1.14099 1.20751 0.94364 0.97171 0.97145 1.21252 0.99498 0.93954 1.07245 1.17497 0.89244 0.92224 0.89441 1.21194 1.14867 0.98072 1.15106 0.87658 1.27276 0.99935 0.98828 0.93042 1.70392 1.29791 1.08729 1.32703 0.83560 0.74766 0.74975 0.77367 1.19940 1.19930 1.19778 0.91347 0.90204 0.91403 0.91097 0.91140 0.89489 0.90504 0.89903 0.76547 0.91243 0.89602 0.76807 0.89067 0.88843 0.88856 0.87511 0.88783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 10.29 37.16 0.38 -0.51 16 2 C 0.06 0.49 6.19 37.16 0.23 0.71 16 3 O -0.35 -3.78 9.97 -44.44 -0.44 -4.22 16 4 C 0.44 5.52 6.80 36.01 0.24 5.76 16 5 O -0.49 -7.45 15.74 -18.75 -0.29 -7.74 16 6 C 0.14 1.69 1.02 -91.77 -0.09 1.59 16 7 C -0.14 -1.48 8.60 37.16 0.32 -1.16 16 8 O -0.53 -5.91 12.72 -49.12 -0.62 -6.53 16 9 C 0.11 1.73 4.45 -4.04 -0.02 1.71 16 10 N -0.74 -12.90 5.14 -61.38 -0.32 -13.22 16 11 C 0.56 12.97 7.73 -12.52 -0.10 12.87 16 12 O -0.53 -14.16 13.55 5.26 0.07 -14.08 16 13 C -0.26 -6.38 5.92 -104.37 -0.62 -7.00 16 14 C -0.04 -0.88 9.53 -39.22 -0.37 -1.26 16 15 C -0.26 -5.36 10.03 -39.37 -0.39 -5.76 16 16 C -0.08 -1.65 10.01 -39.59 -0.40 -2.05 16 17 C -0.20 -4.96 7.86 -38.88 -0.31 -5.27 16 18 C 0.12 3.19 5.18 -106.54 -0.55 2.64 16 19 C -0.47 -12.80 7.66 -37.81 -0.29 -13.09 16 20 H 0.11 3.03 5.91 -52.49 -0.31 2.72 16 21 C 0.03 0.80 5.04 -17.30 -0.09 0.72 16 22 N -0.79 -21.24 12.57 55.56 0.70 -20.54 16 23 Si 1.07 22.65 29.98 -169.99 -5.10 17.55 16 24 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 25 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 26 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.60 8.13 -51.93 -0.42 0.18 16 31 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16 32 H 0.09 0.90 6.57 -51.93 -0.34 0.56 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.39 3.25 9.04 45.56 0.41 3.66 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.09 1.45 7.69 -51.93 -0.40 1.06 16 38 H 0.40 6.02 5.03 -40.82 -0.21 5.82 16 39 H 0.09 1.57 6.41 -52.49 -0.34 1.23 16 40 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 41 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 42 H 0.11 2.70 6.93 -52.49 -0.36 2.34 16 43 H 0.30 8.16 6.54 -40.82 -0.27 7.89 16 LS Contribution 362.64 15.07 5.46 5.46 Total: -1.00 -32.16 362.64 -7.42 -39.58 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -4.83 Total: 13.82 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: -2.05 Total: -10.08 kcal Atomic # 7 Polarization: -34.14 SS G_CDS: 0.38 Total: -33.76 kcal Atomic # 8 Polarization: -31.29 SS G_CDS: -1.29 Total: -32.58 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.10 Total: 17.55 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.16 -7.42 -39.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601440773.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.667 kcal (2) G-P(sol) polarization free energy of solvation -32.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds