Wall clock time and date at job start Fri Apr 10 2020 18:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45197 * 109.46986 * 2 1 4 4 C 1.34233 * 116.99869 * 180.02562 * 3 2 1 5 5 O 1.20822 * 120.00162 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99922 * 179.97438 * 4 3 2 7 7 C 1.53004 * 109.46929 * 84.99952 * 6 4 3 8 8 O 1.42901 * 109.47017 * 325.00253 * 6 4 3 9 9 C 1.53000 * 109.47238 * 205.00261 * 6 4 3 10 10 N 1.46497 * 109.47087 * 185.00092 * 9 6 4 11 11 C 1.34774 * 120.00234 * 179.97438 * 10 9 6 12 12 O 1.21618 * 119.99610 * 359.97438 * 11 10 9 13 13 C 1.47428 * 120.00477 * 180.02562 * 11 10 9 14 14 C 1.39233 * 120.27966 * 357.06144 * 13 11 10 15 15 C 1.38226 * 120.08965 * 180.28388 * 14 13 11 16 16 C 1.38825 * 120.67689 * 359.70940 * 15 14 13 17 17 C 1.37607 * 120.57039 * 0.02562 * 16 15 14 18 18 C 1.40701 * 119.87939 * 359.97438 * 17 16 15 19 19 C 1.40890 * 120.32862 * 180.02562 * 18 17 16 20 20 H 1.07996 * 120.00394 * 145.85600 * 19 18 17 21 21 C 1.40275 * 120.00033 * 325.85922 * 19 18 17 22 22 N 1.30634 * 119.99942 * 340.94548 * 21 19 18 23 23 Si 1.86793 * 120.00223 * 160.94696 * 21 19 18 24 24 H 1.48511 * 109.47229 * 179.97438 * 23 21 19 25 25 H 1.48495 * 109.47369 * 299.99835 * 23 21 19 26 26 H 1.48504 * 109.47149 * 60.00271 * 23 21 19 27 27 H 1.08992 * 109.47406 * 59.99773 * 1 2 3 28 28 H 1.09004 * 109.47322 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46978 * 299.99396 * 1 2 3 30 30 H 1.08998 * 109.47172 * 240.00190 * 2 1 3 31 31 H 1.09001 * 109.47316 * 120.00118 * 2 1 3 32 32 H 1.08999 * 109.46927 * 179.97438 * 7 6 4 33 33 H 1.09002 * 109.47326 * 300.00410 * 7 6 4 34 34 H 1.08999 * 109.46860 * 59.99995 * 7 6 4 35 35 H 0.96698 * 114.00345 * 299.99480 * 8 6 4 36 36 H 1.08997 * 109.47147 * 64.99946 * 9 6 4 37 37 H 1.09003 * 109.46728 * 304.99736 * 9 6 4 38 38 H 0.97004 * 120.00040 * 0.02562 * 10 9 6 39 39 H 1.07998 * 119.95559 * 359.97438 * 14 13 11 40 40 H 1.07998 * 119.65979 * 179.74311 * 15 14 13 41 41 H 1.07996 * 119.71807 * 180.02562 * 16 15 14 42 42 H 1.07995 * 120.05614 * 180.02562 * 17 16 15 43 43 H 0.97001 * 119.99671 * 354.76570 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5867 -0.0015 6 6 3.9207 2.9374 -0.0012 7 6 3.9999 3.4572 1.4357 8 8 3.0826 3.7992 -0.7738 9 6 5.3234 2.9089 -0.6113 10 7 5.9300 4.2381 -0.5036 11 6 7.1733 4.4519 -0.9776 12 8 7.7920 3.5412 -1.4944 13 6 7.7840 5.7893 -0.8686 14 6 7.0592 6.8505 -0.3327 15 6 7.6336 8.1042 -0.2378 16 6 8.9358 8.3210 -0.6673 17 6 9.6789 7.2907 -1.1963 18 6 9.1177 6.0050 -1.3040 19 6 9.8703 4.9432 -1.8437 20 1 9.7370 3.9402 -1.4661 21 6 10.7928 5.1887 -2.8715 22 7 10.7047 6.2822 -3.5807 23 14 12.1471 3.9521 -3.2261 24 1 12.9827 4.4423 -4.3517 25 1 12.9932 3.7843 -2.0174 26 1 11.5418 2.6463 -3.5919 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 4.4169 4.4642 1.4353 33 1 3.0005 3.4775 1.8704 34 1 4.6391 2.7998 2.0251 35 1 2.9865 3.5298 -1.6976 36 1 5.2572 2.6238 -1.6613 37 1 5.9377 2.1847 -0.0762 38 1 5.4369 4.9641 -0.0903 39 1 6.0451 6.6950 0.0047 40 1 7.0636 8.9233 0.1752 41 1 9.3694 9.3067 -0.5856 42 1 10.6913 7.4686 -1.5275 43 1 9.9583 6.8874 -3.4482 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601440773.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:52 Heat of formation + Delta-G solvation = -180.241211 kcal Electronic energy + Delta-G solvation = -27034.579975 eV Core-core repulsion = 23043.555263 eV Total energy + Delta-G solvation = -3991.024712 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.10470 -40.85281 -39.25049 -38.42998 -37.81972 -35.98471 -35.24559 -32.90788 -32.46330 -31.65117 -31.10869 -28.13769 -27.03068 -25.85310 -24.14027 -23.36449 -22.72986 -21.61634 -21.31452 -20.02763 -19.62998 -18.45304 -18.11009 -17.83284 -16.80431 -16.64432 -16.49912 -16.28103 -15.87904 -15.67099 -15.45501 -15.39242 -14.99419 -14.83420 -14.42080 -13.97207 -13.88474 -13.67695 -13.60534 -13.55106 -13.27599 -13.01696 -12.96521 -12.90518 -12.69761 -12.53082 -12.49078 -12.04412 -12.01774 -11.92648 -11.61285 -11.48532 -11.21759 -10.96774 -10.40962 -10.11885 -9.61387 -9.48793 -9.10415 -6.46341 0.39560 0.80855 0.91652 1.25056 1.46141 1.61570 1.76082 2.22380 2.30448 2.38458 2.73832 2.87406 3.19195 3.45008 3.54188 3.60848 3.95547 4.02132 4.18704 4.26492 4.29325 4.36688 4.43536 4.54136 4.59773 4.65564 4.77849 4.81648 4.88963 4.89417 5.00179 5.07301 5.14120 5.31860 5.42994 5.43778 5.65410 5.71495 5.89464 5.97110 6.19791 6.25187 6.34263 6.54478 6.64825 6.84287 6.90625 7.54873 8.04650 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.017113 B = 0.003133 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.793780 B = 8934.055031 C =10208.989399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.047 3.953 3 O -0.343 6.343 4 C 0.448 3.552 5 O -0.525 6.525 6 C 0.155 3.845 7 C -0.143 4.143 8 O -0.531 6.531 9 C 0.113 3.887 10 N -0.716 5.716 11 C 0.559 3.441 12 O -0.578 6.578 13 C -0.281 4.281 14 C -0.040 4.040 15 C -0.242 4.242 16 C -0.071 4.071 17 C -0.225 4.225 18 C 0.096 3.904 19 C -0.511 4.511 20 H 0.080 0.920 21 C -0.003 4.003 22 N -0.817 5.817 23 Si 1.114 2.886 24 H -0.264 1.264 25 H -0.259 1.259 26 H -0.273 1.273 27 H 0.069 0.931 28 H 0.100 0.900 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.398 0.602 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.410 0.590 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.125 0.875 42 H 0.089 0.911 43 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.071 -5.679 7.992 21.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.026 4.026 3 O -0.259 6.259 4 C 0.290 3.710 5 O -0.413 6.413 6 C 0.111 3.889 7 C -0.200 4.200 8 O -0.338 6.338 9 C -0.012 4.012 10 N -0.373 5.373 11 C 0.353 3.647 12 O -0.459 6.459 13 C -0.286 4.286 14 C -0.058 4.058 15 C -0.261 4.261 16 C -0.090 4.090 17 C -0.245 4.245 18 C 0.092 3.908 19 C -0.539 4.539 20 H 0.098 0.902 21 C -0.218 4.218 22 N -0.441 5.441 23 Si 0.932 3.068 24 H -0.188 1.188 25 H -0.184 1.184 26 H -0.199 1.199 27 H 0.088 0.912 28 H 0.119 0.881 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.111 0.889 33 H 0.114 0.886 34 H 0.101 0.899 35 H 0.248 0.752 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.249 0.751 39 H 0.154 0.846 40 H 0.156 0.844 41 H 0.143 0.857 42 H 0.107 0.893 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.210 -6.558 7.206 19.777 hybrid contribution -1.188 -0.021 0.295 1.225 sum -18.399 -6.579 7.501 20.930 Atomic orbital electron populations 1.21819 0.90058 1.04438 1.03883 1.23408 0.97380 0.79048 1.02748 1.86580 1.22716 1.33801 1.82771 1.24579 0.81557 0.92775 0.72118 1.90720 1.61214 1.43776 1.45639 1.21071 0.87607 0.83467 0.96706 1.21894 1.05217 1.03545 0.89382 1.86603 1.68449 1.51542 1.27236 1.21562 0.92606 0.86075 1.00983 1.45547 1.16110 1.12019 1.63584 1.18456 0.80717 0.88518 0.77040 1.90682 1.62972 1.46301 1.45984 1.19713 0.95633 0.93737 1.19543 1.21155 0.98227 0.92149 0.94297 1.20828 0.96490 0.97402 1.11392 1.21174 0.94891 0.97698 0.95217 1.21206 0.99469 0.94546 1.09235 1.17895 0.90466 0.92900 0.89585 1.21104 1.17956 0.97349 1.17459 0.90192 1.28432 1.01365 0.99779 0.92239 1.70499 1.29900 1.09801 1.33901 0.83035 0.72843 0.72880 0.78051 1.18790 1.18363 1.19851 0.91207 0.88131 0.91071 0.91332 0.91051 0.88946 0.88617 0.89888 0.75159 0.92133 0.91358 0.75095 0.84638 0.84408 0.85716 0.89274 0.90437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 10.29 71.98 0.74 -0.63 16 2 C 0.05 0.74 6.19 71.98 0.45 1.19 16 3 O -0.34 -6.88 9.97 -46.50 -0.46 -7.34 16 4 C 0.45 10.69 6.80 71.24 0.48 11.17 16 5 O -0.52 -15.82 15.74 21.98 0.35 -15.48 16 6 C 0.15 3.44 1.02 -11.54 -0.01 3.43 16 7 C -0.14 -2.63 8.60 71.98 0.62 -2.01 16 8 O -0.53 -10.31 12.72 -135.70 -1.73 -12.03 16 9 C 0.11 3.43 4.45 86.38 0.38 3.82 16 10 N -0.72 -24.09 5.14 -466.37 -2.40 -26.49 16 11 C 0.56 26.02 7.73 86.66 0.67 26.69 16 12 O -0.58 -32.06 13.55 -4.09 -0.06 -32.11 16 13 C -0.28 -13.51 5.92 -19.70 -0.12 -13.62 16 14 C -0.04 -1.52 9.53 22.51 0.21 -1.31 16 15 C -0.24 -8.97 10.03 22.41 0.22 -8.74 16 16 C -0.07 -2.96 10.01 22.26 0.22 -2.74 16 17 C -0.23 -11.35 7.86 22.72 0.18 -11.17 16 18 C 0.10 5.23 5.18 -21.11 -0.11 5.12 16 19 C -0.51 -29.75 7.66 23.42 0.18 -29.57 16 20 H 0.08 4.95 5.91 -2.91 -0.02 4.93 16 21 C 0.00 -0.15 5.04 85.37 0.43 0.28 16 22 N -0.82 -45.92 12.57 21.88 0.27 -45.65 16 23 Si 1.11 47.81 29.98 68.60 2.06 49.87 16 24 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 25 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 26 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 27 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.10 0.55 8.14 -2.38 -0.02 0.53 16 29 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.07 1.11 8.13 -2.39 -0.02 1.09 16 31 H 0.07 1.11 8.13 -2.39 -0.02 1.09 16 32 H 0.09 1.59 6.57 -2.39 -0.02 1.58 16 33 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.40 5.76 9.04 -74.06 -0.67 5.09 16 36 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.07 2.37 7.69 -2.39 -0.02 2.35 16 38 H 0.41 11.25 5.03 -92.71 -0.47 10.79 16 39 H 0.14 3.94 6.41 -2.91 -0.02 3.92 16 40 H 0.14 3.99 8.06 -2.91 -0.02 3.96 16 41 H 0.12 4.35 8.06 -2.91 -0.02 4.33 16 42 H 0.09 4.72 6.93 -2.91 -0.02 4.70 16 43 H 0.28 16.34 6.54 -92.71 -0.61 15.74 16 Total: -1.00 -74.29 362.64 2.68 -71.61 By element: Atomic # 1 Polarization: 35.64 SS G_CDS: 0.09 Total: 35.72 kcal Atomic # 6 Polarization: -22.66 SS G_CDS: 4.56 Total: -18.10 kcal Atomic # 7 Polarization: -70.01 SS G_CDS: -2.12 Total: -72.13 kcal Atomic # 8 Polarization: -65.07 SS G_CDS: -1.90 Total: -66.97 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 2.06 Total: 49.87 kcal Total: -74.29 2.68 -71.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601440773.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.633 kcal (2) G-P(sol) polarization free energy of solvation -74.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds