Wall clock time and date at job start Fri Apr 10 2020 18:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 113.99750 * 2 1 4 4 C 1.53001 * 109.47244 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.46781 * 54.99937 * 4 3 2 6 6 C 1.53004 * 109.47042 * 175.00069 * 4 3 2 7 7 S 1.81397 * 109.46883 * 185.39047 * 6 4 3 8 8 O 1.42104 * 110.54191 * 62.38032 * 7 6 4 9 9 O 1.42098 * 110.54460 * 285.62968 * 7 6 4 10 10 N 1.65599 * 104.45058 * 174.00526 * 7 6 4 11 11 C 1.46926 * 120.63294 * 89.99934 * 10 7 6 12 12 C 1.53191 * 108.89172 * 126.30081 * 11 10 7 13 13 C 1.53348 * 109.15023 * 54.58063 * 12 11 10 14 14 C 1.50699 * 109.40599 * 178.68012 * 13 12 11 15 15 H 1.08006 * 120.00059 * 120.12030 * 14 13 12 16 16 C 1.37877 * 120.00025 * 300.11961 * 14 13 12 17 17 N 1.31520 * 119.99816 * 180.02562 * 16 14 13 18 18 Si 1.86793 * 120.00020 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.47158 * 90.00166 * 18 16 14 20 20 H 1.48501 * 109.47216 * 209.99764 * 18 16 14 21 21 H 1.48496 * 109.47157 * 330.00123 * 18 16 14 22 22 C 1.53038 * 109.60592 * 298.71030 * 13 12 11 23 23 C 1.46924 * 120.62954 * 269.97856 * 10 7 6 24 24 O 1.42898 * 109.46942 * 295.00058 * 4 3 2 25 25 C 1.42902 * 114.00044 * 95.24960 * 24 4 3 26 26 H 1.09005 * 109.46778 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47157 * 299.99734 * 1 2 3 28 28 H 1.08994 * 109.46941 * 60.00232 * 1 2 3 29 29 H 1.09005 * 109.46889 * 59.99965 * 3 2 1 30 30 H 1.08995 * 109.47120 * 299.99989 * 3 2 1 31 31 H 1.08997 * 109.46859 * 65.39563 * 6 4 3 32 32 H 1.08999 * 109.47139 * 305.38947 * 6 4 3 33 33 H 1.08995 * 109.58855 * 246.15967 * 11 10 7 34 34 H 1.08999 * 109.58197 * 6.44429 * 11 10 7 35 35 H 1.09001 * 109.49554 * 174.66242 * 12 11 10 36 36 H 1.09004 * 109.49601 * 294.75461 * 12 11 10 37 37 H 1.08995 * 109.43359 * 58.75652 * 13 12 11 38 38 H 0.97000 * 119.99600 * 180.02562 * 17 16 14 39 39 H 1.09002 * 109.49781 * 301.42189 * 22 13 12 40 40 H 1.09001 * 109.52360 * 181.34524 * 22 13 12 41 41 H 1.09009 * 109.59037 * 353.41836 * 23 10 7 42 42 H 1.09006 * 109.58974 * 113.69667 * 23 10 7 43 43 H 1.08998 * 109.47049 * 294.49943 * 25 24 4 44 44 H 1.09004 * 109.46669 * 54.49767 * 25 24 4 45 45 H 1.09000 * 109.47273 * 174.49286 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 1 3.8514 0.5684 -0.8409 6 6 4.1572 2.5771 -0.1251 7 16 5.9576 2.4230 -0.2846 8 8 6.2942 1.7094 -1.4664 9 8 6.5420 2.0861 0.9661 10 7 6.4802 3.9669 -0.5769 11 6 6.8431 4.8574 0.5340 12 6 8.2570 5.3967 0.2959 13 6 8.3177 6.0558 -1.0874 14 6 9.6977 6.6171 -1.3144 15 1 10.2931 6.2672 -2.1448 16 6 10.2001 7.5775 -0.4622 17 7 11.4043 8.0677 -0.6608 18 14 9.1700 8.1834 0.9734 19 1 9.4384 7.3401 2.1659 20 1 9.5226 9.5940 1.2752 21 1 7.7301 8.0976 0.6205 22 6 8.0065 5.0156 -2.1659 23 6 6.5903 4.4722 -1.9521 24 8 3.9648 0.5798 1.2220 25 6 4.1603 -0.8330 1.1335 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6885 1.8464 0.8900 30 1 1.6885 1.8464 -0.8899 31 1 3.9200 3.1625 0.7633 32 1 3.7557 3.0761 -1.0070 33 1 6.1386 5.6877 0.5819 34 1 6.8170 4.3015 1.4713 35 1 8.5002 6.1313 1.0637 36 1 8.9718 4.5749 0.3386 37 1 7.5852 6.8614 -1.1377 38 1 11.7579 8.7431 -0.0610 39 1 8.7238 4.1976 -2.1001 40 1 8.0734 5.4799 -3.1498 41 1 6.3998 3.6616 -2.6556 42 1 5.8634 5.2694 -2.1079 43 1 3.2040 -1.3211 0.9453 44 1 4.8480 -1.0541 0.3171 45 1 4.5782 -1.2014 2.0704 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603309442.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:16 Heat of formation + Delta-G solvation = -183.683406 kcal Electronic energy + Delta-G solvation = -26653.132065 eV Core-core repulsion = 22797.402040 eV Total energy + Delta-G solvation = -3855.730025 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.98912 -39.46316 -38.25936 -38.08763 -37.00459 -35.25317 -33.71903 -33.09610 -31.95673 -28.82939 -27.80967 -27.52687 -26.39935 -24.38087 -23.83270 -22.85228 -21.20223 -19.76104 -18.93255 -18.65290 -18.29395 -18.10044 -17.12916 -16.99347 -16.64616 -16.57868 -16.23103 -15.78016 -15.56548 -15.33683 -15.00285 -14.86913 -14.67731 -14.37888 -14.11201 -14.02933 -13.63479 -13.48282 -13.36630 -13.17243 -13.06543 -12.94739 -12.77007 -12.71446 -12.22754 -12.21622 -12.15764 -12.06464 -11.87229 -11.65834 -11.43641 -11.05977 -10.93830 -10.82882 -10.62555 -10.59942 -9.83106 -8.26294 -6.30513 -0.84103 1.35045 1.39012 1.50432 1.61577 2.36827 2.44387 2.63657 2.95075 3.09185 3.14787 3.51116 3.72162 3.76836 3.93132 4.08306 4.19090 4.27431 4.34460 4.35488 4.38599 4.46512 4.55172 4.57237 4.59202 4.60608 4.64532 4.69309 4.73584 4.81905 4.83794 4.89814 4.93696 5.02395 5.16934 5.42430 5.48295 5.69098 5.72278 5.81150 5.96727 6.14011 6.35292 6.77225 7.34875 8.90908 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.028098 B = 0.003159 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.256457 B = 8862.025072 C = 8932.238375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.413 6.413 3 C 0.051 3.949 4 C 0.087 3.913 5 H 0.084 0.916 6 C -0.610 4.610 7 S 2.604 3.396 8 O -0.987 6.987 9 O -0.981 6.981 10 N -0.997 5.997 11 C 0.117 3.883 12 C -0.137 4.137 13 C 0.015 3.985 14 C -0.521 4.521 15 H 0.025 0.975 16 C 0.002 3.998 17 N -0.956 5.956 18 Si 0.951 3.049 19 H -0.270 1.270 20 H -0.303 1.303 21 H -0.225 1.225 22 C -0.113 4.113 23 C 0.118 3.882 24 O -0.399 6.399 25 C 0.019 3.981 26 H 0.095 0.905 27 H 0.049 0.951 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.167 0.833 32 H 0.188 0.812 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.050 0.950 36 H 0.039 0.961 37 H 0.043 0.957 38 H 0.264 0.736 39 H 0.033 0.967 40 H 0.070 0.930 41 H 0.099 0.901 42 H 0.103 0.897 43 H 0.068 0.932 44 H 0.041 0.959 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.657 -13.386 2.032 30.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.333 6.333 3 C -0.027 4.027 4 C 0.027 3.973 5 H 0.102 0.898 6 C -0.741 4.741 7 S 2.702 3.298 8 O -0.978 6.978 9 O -0.971 6.971 10 N -0.836 5.836 11 C -0.008 4.008 12 C -0.176 4.176 13 C -0.004 4.004 14 C -0.559 4.559 15 H 0.044 0.956 16 C -0.194 4.194 17 N -0.597 5.597 18 Si 0.777 3.223 19 H -0.197 1.197 20 H -0.231 1.231 21 H -0.148 1.148 22 C -0.152 4.152 23 C -0.006 4.006 24 O -0.318 6.318 25 C -0.076 4.076 26 H 0.113 0.887 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.107 0.893 31 H 0.185 0.815 32 H 0.205 0.795 33 H 0.116 0.884 34 H 0.112 0.888 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.051 0.949 40 H 0.089 0.911 41 H 0.118 0.882 42 H 0.121 0.879 43 H 0.086 0.914 44 H 0.060 0.940 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -26.827 -14.110 2.302 30.398 hybrid contribution 0.223 0.835 0.354 0.934 sum -26.603 -13.275 2.655 29.850 Atomic orbital electron populations 1.22937 0.79131 1.03880 1.01041 1.87812 1.21740 1.28054 1.95698 1.23053 0.91033 0.85528 1.03093 1.21910 0.95020 0.91628 0.88696 0.89787 1.30640 1.23326 1.04453 1.15716 1.04926 0.78996 0.72769 0.73073 1.93536 1.83405 1.71386 1.49425 1.93542 1.75860 1.82115 1.45607 1.57539 1.80646 1.32234 1.13145 1.21584 0.96134 0.94475 0.88573 1.22287 0.96701 0.99366 0.99219 1.19145 0.94737 0.94386 0.92100 1.21479 1.01194 1.21135 1.12080 0.95620 1.26046 0.96002 0.96309 1.01034 1.70088 1.18826 1.30623 1.40175 0.85815 0.81603 0.75765 0.79135 1.19660 1.23083 1.14777 1.21717 0.96247 0.97847 0.99361 1.21685 0.97480 1.00664 0.80778 1.87955 1.87937 1.23015 1.32936 1.23109 1.01422 0.79893 1.03221 0.88658 0.93282 0.92674 0.91164 0.89314 0.81466 0.79459 0.88378 0.88849 0.93236 0.94167 0.93852 0.92770 0.94854 0.91099 0.88235 0.87935 0.91393 0.94043 0.88378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 113.37 1.25 1.49 16 2 O -0.41 -6.50 9.32 -144.34 -1.34 -7.84 16 3 C 0.05 0.67 5.60 71.98 0.40 1.07 16 4 C 0.09 1.56 2.47 30.60 0.08 1.63 16 5 H 0.08 1.51 7.65 -2.39 -0.02 1.49 16 6 C -0.61 -9.09 5.87 71.98 0.42 -8.67 16 7 S 2.60 70.46 5.26 -56.49 -0.30 70.16 16 8 O -0.99 -31.84 16.59 -127.65 -2.12 -33.96 16 9 O -0.98 -34.12 16.41 -127.56 -2.09 -36.21 16 10 N -1.00 -27.87 3.22 -513.07 -1.65 -29.53 16 11 C 0.12 3.53 6.42 86.36 0.55 4.08 16 12 C -0.14 -5.63 4.86 30.77 0.15 -5.48 16 13 C 0.02 0.67 1.66 -11.41 -0.02 0.65 16 14 C -0.52 -29.83 9.14 25.60 0.23 -29.60 16 15 H 0.03 1.65 7.99 -2.91 -0.02 1.62 16 16 C 0.00 0.12 5.45 84.65 0.46 0.58 16 17 N -0.96 -60.92 13.96 21.45 0.30 -60.62 16 18 Si 0.95 43.79 24.38 68.60 1.67 45.46 16 19 H -0.27 -12.05 6.85 99.48 0.68 -11.37 16 20 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 21 H -0.22 -8.86 6.53 99.48 0.65 -8.21 16 22 C -0.11 -4.27 5.30 30.67 0.16 -4.10 16 23 C 0.12 3.19 6.43 86.36 0.56 3.74 16 24 O -0.40 -9.18 9.92 -144.12 -1.43 -10.61 16 25 C 0.02 0.38 10.72 113.37 1.21 1.60 16 26 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 27 H 0.05 0.38 8.14 -2.39 -0.02 0.37 16 28 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 30 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.17 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.19 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.09 2.66 6.86 -2.39 -0.02 2.64 16 35 H 0.05 2.09 3.26 -2.39 -0.01 2.09 16 36 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.04 1.80 7.20 -2.39 -0.02 1.79 16 38 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 39 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 41 H 0.10 2.39 6.86 -2.38 -0.02 2.37 16 42 H 0.10 2.03 8.14 -2.38 -0.02 2.01 16 43 H 0.07 1.18 6.93 -2.39 -0.02 1.16 16 44 H 0.04 0.81 7.97 -2.38 -0.02 0.79 16 45 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -81.87 363.33 -0.62 -82.50 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: 0.88 Total: 13.66 kcal Atomic # 6 Polarization: -38.47 SS G_CDS: 5.46 Total: -33.01 kcal Atomic # 7 Polarization: -88.80 SS G_CDS: -1.35 Total: -90.15 kcal Atomic # 8 Polarization: -81.64 SS G_CDS: -6.99 Total: -88.62 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.67 Total: 45.46 kcal Atomic # 16 Polarization: 70.46 SS G_CDS: -0.30 Total: 70.16 kcal Total: -81.87 -0.62 -82.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603309442.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.187 kcal (2) G-P(sol) polarization free energy of solvation -81.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds