Wall clock time and date at job start Fri Apr 10 2020 18:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42896 * 114.00081 * 2 1 4 4 C 1.53004 * 109.47051 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.46612 * 55.00079 * 4 3 2 6 6 C 1.52997 * 109.47130 * 175.00248 * 4 3 2 7 7 S 1.81397 * 109.47319 * 56.63370 * 6 4 3 8 8 O 1.42098 * 110.54210 * 60.78569 * 7 6 4 9 9 O 1.42098 * 110.54540 * 284.03796 * 7 6 4 10 10 N 1.65597 * 104.45078 * 172.41160 * 7 6 4 11 11 C 1.46997 * 120.61503 * 270.02193 * 10 7 6 12 12 C 1.53191 * 108.74036 * 126.38650 * 11 10 7 13 13 C 1.53043 * 109.33809 * 54.62046 * 12 11 10 14 14 C 1.53040 * 109.54154 * 298.62277 * 13 12 11 15 15 H 1.08995 * 109.49374 * 301.41164 * 14 13 12 16 16 C 1.50697 * 109.49619 * 181.31364 * 14 13 12 17 17 H 1.08000 * 119.99876 * 239.99856 * 16 14 13 18 18 C 1.37875 * 120.00058 * 60.00135 * 16 14 13 19 19 N 1.31509 * 119.99944 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 119.99953 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.47291 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47035 * 119.99537 * 20 18 16 23 23 H 1.48495 * 109.47413 * 240.00140 * 20 18 16 24 24 C 1.46920 * 120.63161 * 90.00124 * 10 7 6 25 25 O 1.42899 * 109.47340 * 295.00310 * 4 3 2 26 26 C 1.42901 * 114.00124 * 153.98486 * 25 4 3 27 27 H 1.08997 * 109.47283 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47055 * 300.00212 * 1 2 3 29 29 H 1.09006 * 109.46901 * 59.99517 * 1 2 3 30 30 H 1.09000 * 109.47011 * 60.00195 * 3 2 1 31 31 H 1.08999 * 109.47154 * 299.99943 * 3 2 1 32 32 H 1.09006 * 109.47042 * 296.63165 * 6 4 3 33 33 H 1.08994 * 109.47049 * 176.63736 * 6 4 3 34 34 H 1.09008 * 109.62865 * 6.59709 * 11 10 7 35 35 H 1.08992 * 109.58743 * 246.14911 * 11 10 7 36 36 H 1.09009 * 109.49729 * 294.65799 * 12 11 10 37 37 H 1.09001 * 109.49965 * 174.59379 * 12 11 10 38 38 H 1.09003 * 109.45455 * 58.64373 * 13 12 11 39 39 H 1.09004 * 109.46046 * 178.60926 * 13 12 11 40 40 H 0.97004 * 119.99916 * 179.97438 * 19 18 16 41 41 H 1.09003 * 109.59128 * 113.84284 * 24 10 7 42 42 H 1.09001 * 109.70562 * 353.48584 * 24 10 7 43 43 H 1.08998 * 109.46763 * 175.11161 * 26 25 4 44 44 H 1.08997 * 109.47181 * 295.11432 * 26 25 4 45 45 H 1.09000 * 109.46594 * 55.10983 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8514 0.5681 -0.8409 6 6 4.1575 2.5768 -0.1250 7 16 3.5532 3.6327 1.2205 8 8 3.9209 3.0921 2.4821 9 8 2.2203 4.0533 0.9641 10 7 4.4505 5.0187 1.0929 11 6 5.7259 5.1535 1.8111 12 6 6.8174 5.5389 0.8077 13 6 6.3870 6.7962 0.0487 14 6 5.0986 6.5105 -0.7262 15 1 5.2654 5.6842 -1.4172 16 6 4.6933 7.7392 -1.4987 17 1 3.7380 8.2058 -1.3089 18 6 5.5421 8.2679 -2.4480 19 7 6.7056 7.7000 -2.6789 20 14 5.0394 9.7906 -3.4061 21 1 3.6937 10.2336 -2.9611 22 1 6.0230 10.8761 -3.1621 23 1 5.0021 9.4731 -4.8563 24 6 3.9871 6.1364 0.2594 25 8 3.9649 0.5795 1.2219 26 6 5.2145 -0.1066 1.1227 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.6887 1.8463 0.8900 31 1 1.6887 1.8463 -0.8900 32 1 3.8783 3.0142 -1.0836 33 1 5.2428 2.4966 -0.0646 34 1 5.9822 4.2051 2.2835 35 1 5.6372 5.9301 2.5706 36 1 6.9680 4.7217 0.1021 37 1 7.7479 5.7359 1.3401 38 1 6.2128 7.6061 0.7571 39 1 7.1731 7.0864 -0.6485 40 1 7.3026 8.0717 -3.3470 41 1 3.7565 6.9932 0.8925 42 1 3.0950 5.8387 -0.2917 43 1 5.5125 -0.4631 2.1088 44 1 5.1107 -0.9546 0.4458 45 1 5.9734 0.5747 0.7379 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603378952.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:21 Heat of formation + Delta-G solvation = -163.390155 kcal Electronic energy + Delta-G solvation = -27234.641178 eV Core-core repulsion = 23379.791134 eV Total energy + Delta-G solvation = -3854.850044 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -39.02733 -37.76117 -37.36315 -36.82572 -35.63956 -33.36470 -32.62944 -31.14271 -30.15088 -28.02344 -26.76825 -25.44826 -25.16555 -23.60459 -22.01694 -21.70332 -19.48062 -18.40404 -17.80832 -17.16177 -16.63556 -16.40629 -16.10472 -15.72609 -15.54706 -15.32703 -14.97547 -14.67031 -14.12002 -13.98001 -13.55494 -13.28218 -12.98805 -12.95380 -12.79412 -12.74673 -12.49532 -12.21529 -11.93838 -11.77558 -11.68136 -11.49954 -11.43729 -11.26184 -11.04612 -10.89589 -10.74012 -10.44863 -10.29087 -10.00064 -9.99111 -9.87093 -9.78373 -9.40913 -8.90567 -8.49995 -8.18951 -6.08617 -4.15963 0.51169 2.96161 3.24188 3.33040 3.33478 3.37393 3.52191 4.03179 4.34714 4.37289 4.49622 4.71863 4.83313 5.08577 5.15410 5.16229 5.20103 5.23273 5.26058 5.28819 5.34704 5.43597 5.51849 5.55447 5.64229 5.66756 5.76832 5.96845 6.22837 6.27991 6.43552 6.56391 6.60763 6.82515 6.85955 6.93132 6.98143 7.14497 7.37342 7.63896 7.84297 8.02188 8.32634 8.88048 9.49747 10.96600 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.017081 B = 0.003950 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.860143 B = 7086.108425 C = 7714.243665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.380 6.380 3 C 0.043 3.957 4 C 0.105 3.895 5 H 0.091 0.909 6 C -0.667 4.667 7 S 2.612 3.388 8 O -0.946 6.946 9 O -0.960 6.960 10 N -0.995 5.995 11 C 0.124 3.876 12 C -0.136 4.136 13 C -0.111 4.111 14 C 0.037 3.963 15 H 0.028 0.972 16 C -0.516 4.516 17 H 0.059 0.941 18 C 0.064 3.936 19 N -0.889 5.889 20 Si 0.892 3.108 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.285 1.285 24 C 0.124 3.876 25 O -0.367 6.367 26 C 0.029 3.971 27 H 0.088 0.912 28 H 0.046 0.954 29 H 0.044 0.956 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.147 0.853 33 H 0.140 0.860 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.054 0.946 37 H 0.057 0.943 38 H 0.037 0.963 39 H 0.095 0.905 40 H 0.260 0.740 41 H 0.063 0.937 42 H 0.075 0.925 43 H 0.091 0.909 44 H 0.045 0.955 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.665 -13.465 4.866 14.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.298 6.298 3 C -0.034 4.034 4 C 0.045 3.955 5 H 0.109 0.891 6 C -0.794 4.794 7 S 2.703 3.297 8 O -0.936 6.936 9 O -0.950 6.950 10 N -0.834 5.834 11 C -0.001 4.001 12 C -0.175 4.175 13 C -0.149 4.149 14 C 0.018 3.982 15 H 0.046 0.954 16 C -0.555 4.555 17 H 0.077 0.923 18 C -0.138 4.138 19 N -0.527 5.527 20 Si 0.720 3.280 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.211 1.211 24 C 0.001 3.999 25 O -0.286 6.286 26 C -0.067 4.067 27 H 0.106 0.894 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.165 0.835 33 H 0.158 0.842 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.056 0.944 39 H 0.113 0.887 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.094 0.906 43 H 0.110 0.890 44 H 0.063 0.937 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -4.179 -13.783 5.565 15.440 hybrid contribution 0.410 1.014 -1.535 1.885 sum -3.769 -12.769 4.030 13.910 Atomic orbital electron populations 1.22818 0.80552 1.02868 1.00616 1.87864 1.20071 1.26381 1.95527 1.22981 0.91503 0.86296 1.02616 1.21645 0.92637 0.91069 0.90144 0.89087 1.31257 1.13411 1.11270 1.23484 1.04977 0.74617 0.73946 0.76123 1.93568 1.83841 1.79429 1.36782 1.93572 1.34429 1.80346 1.86682 1.57727 1.34865 1.30119 1.60640 1.21424 0.82912 1.01556 0.94215 1.22036 0.96571 1.00932 0.97956 1.21585 1.01816 0.93437 0.98019 1.19014 0.90524 0.96833 0.91879 0.95391 1.21156 1.03266 1.11403 1.19670 0.92261 1.24935 0.94915 0.97146 0.96772 1.69876 1.09005 1.40340 1.33518 0.86542 0.78738 0.83016 0.79746 1.19669 1.21035 1.21066 1.21824 0.98494 0.87020 0.92607 1.88076 1.38540 1.70925 1.31018 1.22853 0.85216 0.95558 1.03089 0.89368 0.93559 0.93705 0.92012 0.90075 0.83515 0.84162 0.90604 0.91471 0.92713 0.92473 0.94445 0.88717 0.93016 0.91885 0.90626 0.89043 0.93676 0.93778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.38 -5.05 10.67 -40.08 -0.43 -5.48 16 3 C 0.04 0.59 4.85 37.16 0.18 0.77 16 4 C 0.11 1.38 2.67 -26.73 -0.07 1.31 16 5 H 0.09 1.01 7.88 -51.93 -0.41 0.60 16 6 C -0.67 -8.90 6.05 37.16 0.22 -8.67 16 7 S 2.61 43.99 4.46 -107.50 -0.48 43.51 16 8 O -0.95 -17.61 15.83 -62.97 -1.00 -18.61 16 9 O -0.96 -18.00 15.05 -57.54 -0.87 -18.87 16 10 N -0.99 -17.59 3.22 -113.47 -0.37 -17.96 16 11 C 0.12 2.03 6.32 -3.67 -0.02 2.00 16 12 C -0.14 -2.35 6.08 -26.61 -0.16 -2.51 16 13 C -0.11 -2.38 4.96 -26.69 -0.13 -2.52 16 14 C 0.04 0.85 2.25 -91.65 -0.21 0.65 16 15 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 16 C -0.52 -13.26 8.56 -34.44 -0.29 -13.55 16 17 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 18 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 19 N -0.89 -23.87 11.31 55.43 0.63 -23.24 16 20 Si 0.89 20.35 29.54 -169.99 -5.02 15.33 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 C 0.12 2.49 5.53 -3.71 -0.02 2.47 16 25 O -0.37 -5.29 9.28 -53.79 -0.50 -5.79 16 26 C 0.03 0.31 10.80 101.05 1.09 1.40 16 27 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.92 6.15 -51.93 -0.32 0.60 16 31 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.15 1.76 8.14 -51.92 -0.42 1.34 16 33 H 0.14 1.65 7.45 -51.93 -0.39 1.27 16 34 H 0.08 1.10 7.10 -51.92 -0.37 0.73 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.05 0.93 8.14 -51.92 -0.42 0.50 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.09 2.32 6.04 -51.93 -0.31 2.00 16 40 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 41 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 42 H 0.08 1.48 7.11 -51.93 -0.37 1.11 16 43 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.04 0.42 7.43 -51.93 -0.39 0.04 16 LS Contribution 366.12 15.07 5.52 5.52 Total: -1.00 -31.28 366.12 -8.50 -39.78 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -7.59 Total: 1.49 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: 1.60 Total: -15.69 kcal Atomic # 7 Polarization: -41.46 SS G_CDS: 0.26 Total: -41.20 kcal Atomic # 8 Polarization: -45.95 SS G_CDS: -2.79 Total: -48.74 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 16 Polarization: 43.99 SS G_CDS: -0.48 Total: 43.51 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.28 -8.50 -39.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603378952.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.614 kcal (2) G-P(sol) polarization free energy of solvation -31.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds