Wall clock time and date at job start Fri Apr 10 2020 18:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99629 * 2 1 4 4 C 1.53000 * 109.46726 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47069 * 304.99524 * 4 3 2 6 6 C 1.53006 * 109.46846 * 185.00091 * 4 3 2 7 7 S 1.81401 * 109.46962 * 179.97438 * 6 4 3 8 8 O 1.42100 * 110.54336 * 291.62381 * 7 6 4 9 9 O 1.42105 * 110.53903 * 68.37462 * 7 6 4 10 10 N 1.65596 * 104.44855 * 179.97438 * 7 6 4 11 11 C 1.46928 * 120.63357 * 269.72240 * 10 7 6 12 12 C 1.52760 * 109.00929 * 233.58159 * 11 10 7 13 13 C 1.53039 * 109.38705 * 305.59123 * 12 11 10 14 14 C 1.53042 * 109.53879 * 61.23520 * 13 12 11 15 15 H 1.08993 * 109.52323 * 58.60421 * 14 13 12 16 16 C 1.50697 * 109.49659 * 178.68596 * 14 13 12 17 17 H 1.08003 * 119.99640 * 119.83816 * 16 14 13 18 18 C 1.37872 * 120.00295 * 299.83772 * 16 14 13 19 19 N 1.31516 * 119.99913 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 120.00385 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46872 * 90.00183 * 20 18 16 22 22 H 1.48498 * 109.47343 * 210.00104 * 20 18 16 23 23 H 1.48500 * 109.46929 * 330.00635 * 20 18 16 24 24 C 1.46923 * 120.63047 * 90.00142 * 10 7 6 25 25 O 1.42899 * 109.47405 * 64.99720 * 4 3 2 26 26 C 1.42894 * 114.00248 * 269.99929 * 25 4 3 27 27 H 1.09000 * 109.47196 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47484 * 299.99646 * 1 2 3 29 29 H 1.09004 * 109.47459 * 59.99983 * 1 2 3 30 30 H 1.09002 * 109.47382 * 59.99956 * 3 2 1 31 31 H 1.09001 * 109.46938 * 299.99942 * 3 2 1 32 32 H 1.09002 * 109.46824 * 299.99583 * 6 4 3 33 33 H 1.09001 * 109.47241 * 59.99481 * 6 4 3 34 34 H 1.08999 * 109.58459 * 353.41733 * 11 10 7 35 35 H 1.08999 * 109.58945 * 113.84279 * 11 10 7 36 36 H 1.09002 * 109.56365 * 185.54661 * 12 11 10 37 37 H 1.09010 * 109.38067 * 65.51525 * 12 11 10 38 38 H 1.09006 * 109.45363 * 301.21844 * 13 12 11 39 39 H 1.08994 * 109.44980 * 181.25432 * 13 12 11 40 40 H 0.97003 * 120.00512 * 179.97438 * 19 18 16 41 41 H 1.09006 * 109.59035 * 246.15776 * 24 10 7 42 42 H 1.09003 * 109.58656 * 6.43617 * 24 10 7 43 43 H 1.09007 * 109.47080 * 300.00328 * 26 25 4 44 44 H 1.08998 * 109.47026 * 59.99782 * 26 25 4 45 45 H 1.08994 * 109.47183 * 179.97438 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8514 0.5683 0.8410 6 6 4.1573 2.5770 0.1251 7 16 5.9656 2.4337 0.1251 8 8 6.4156 1.7999 1.3146 9 8 6.4325 2.0148 -1.1500 10 7 6.5037 3.9937 0.2642 11 6 6.7614 4.8062 -0.9325 12 6 8.1825 5.3619 -0.8601 13 6 8.3680 6.1117 0.4611 14 6 8.1650 5.1458 1.6307 15 1 8.8779 4.3250 1.5532 16 6 8.3796 5.8776 2.9304 17 1 7.5795 5.9403 3.6532 18 6 9.5971 6.4670 3.1969 19 7 10.5712 6.3910 2.3165 20 14 9.8629 7.3747 4.8077 21 1 10.3776 6.4285 5.8300 22 1 10.8481 8.4669 4.6037 23 1 8.5744 7.9502 5.2700 24 6 6.7383 4.5895 1.5865 25 8 3.9648 0.5797 -1.2219 26 6 4.0463 -0.8459 -1.1671 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.6885 1.8465 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 3.8413 3.1934 -0.7165 33 1 3.8296 3.0385 1.0567 34 1 6.6575 4.1873 -1.8237 35 1 6.0509 5.6318 -0.9737 36 1 8.3502 6.0450 -1.6928 37 1 8.8958 4.5394 -0.9149 38 1 7.6384 6.9190 0.5260 39 1 9.3745 6.5276 0.5041 40 1 11.4277 6.8059 2.5037 41 1 6.0258 5.3971 1.7551 42 1 6.6166 3.8282 2.3571 43 1 4.7575 -1.1398 -0.3951 44 1 3.0646 -1.2572 -0.9322 45 1 4.3786 -1.2282 -2.1322 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603378953.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:24 Heat of formation + Delta-G solvation = -188.364224 kcal Electronic energy + Delta-G solvation = -26667.063806 eV Core-core repulsion = 22811.130806 eV Total energy + Delta-G solvation = -3855.933001 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.00534 -39.26961 -38.21626 -38.05527 -36.95493 -35.17607 -33.71374 -32.71693 -31.83892 -28.82248 -27.52710 -27.01520 -26.41645 -25.14558 -23.34179 -22.85309 -21.12345 -19.70300 -18.85642 -18.31367 -18.15935 -17.98869 -17.11248 -16.99124 -16.59097 -16.51013 -16.21643 -15.76314 -15.43542 -15.11056 -14.97255 -14.84512 -14.41616 -14.24174 -14.10754 -13.81660 -13.46134 -13.36220 -13.16105 -13.12313 -12.96351 -12.87650 -12.74765 -12.65695 -12.48068 -12.23296 -12.13842 -11.84613 -11.81731 -11.75355 -11.54763 -11.02323 -10.82510 -10.72991 -10.57666 -10.40048 -9.69674 -8.04909 -6.20451 -0.78852 1.44612 1.45692 1.55387 1.67881 2.45570 2.46940 2.63066 2.98825 3.19108 3.22017 3.54160 3.75463 3.82710 3.96416 4.11075 4.30317 4.37619 4.38529 4.40070 4.47082 4.54764 4.60427 4.60619 4.62175 4.67901 4.71301 4.84465 4.85041 4.90183 4.91995 5.00569 5.12101 5.31936 5.38192 5.57447 5.67781 5.76933 5.97381 6.01542 6.13230 6.20367 6.39916 6.92659 7.47876 8.99276 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.022936 B = 0.003231 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.475163 B = 8664.769491 C = 9200.496506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.051 3.949 4 C 0.088 3.912 5 H 0.080 0.920 6 C -0.608 4.608 7 S 2.604 3.396 8 O -0.997 6.997 9 O -0.975 6.975 10 N -1.000 6.000 11 C 0.121 3.879 12 C -0.130 4.130 13 C -0.103 4.103 14 C 0.033 3.967 15 H -0.020 1.020 16 C -0.532 4.532 17 H 0.064 0.936 18 C 0.010 3.990 19 N -0.920 5.920 20 Si 0.957 3.043 21 H -0.282 1.282 22 H -0.286 1.286 23 H -0.260 1.260 24 C 0.132 3.868 25 O -0.398 6.398 26 C 0.019 3.981 27 H 0.096 0.904 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.171 0.829 33 H 0.179 0.821 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.030 0.970 38 H 0.046 0.954 39 H 0.056 0.944 40 H 0.259 0.741 41 H 0.084 0.916 42 H 0.072 0.928 43 H 0.038 0.962 44 H 0.071 0.929 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.782 -7.677 -6.990 24.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.332 6.332 3 C -0.027 4.027 4 C 0.028 3.972 5 H 0.098 0.902 6 C -0.739 4.739 7 S 2.702 3.298 8 O -0.988 6.988 9 O -0.966 6.966 10 N -0.838 5.838 11 C -0.004 4.004 12 C -0.169 4.169 13 C -0.141 4.141 14 C 0.013 3.987 15 H -0.002 1.002 16 C -0.571 4.571 17 H 0.083 0.917 18 C -0.189 4.189 19 N -0.559 5.559 20 Si 0.783 3.217 21 H -0.208 1.208 22 H -0.212 1.212 23 H -0.184 1.184 24 C 0.008 3.992 25 O -0.317 6.317 26 C -0.076 4.076 27 H 0.115 0.885 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.104 0.896 31 H 0.091 0.909 32 H 0.189 0.811 33 H 0.197 0.803 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.102 0.898 37 H 0.049 0.951 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.102 0.898 42 H 0.090 0.910 43 H 0.056 0.944 44 H 0.090 0.910 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -20.893 -8.454 -7.255 23.677 hybrid contribution 0.252 0.729 1.124 1.363 sum -20.641 -7.725 -6.131 22.876 Atomic orbital electron populations 1.22946 0.79120 1.03921 1.01044 1.87810 1.21779 1.27930 1.95687 1.23064 0.90975 0.85583 1.03098 1.21869 0.95022 0.91531 0.88758 0.90227 1.30587 1.23636 1.04357 1.15360 1.04890 0.79046 0.72893 0.72987 1.93540 1.80516 1.74804 1.49928 1.93520 1.79660 1.80375 1.42997 1.57577 1.80784 1.32428 1.13013 1.21503 0.97104 0.95766 0.86007 1.21822 0.96706 0.99471 0.98892 1.21390 1.01705 0.97788 0.93237 1.18915 0.91538 0.93702 0.94519 1.00224 1.21536 0.98452 1.34011 1.03055 0.91743 1.25787 0.95903 0.97270 0.99930 1.70056 1.03875 1.45700 1.36279 0.85572 0.78274 0.78060 0.79818 1.20783 1.21187 1.18406 1.21546 0.98555 0.97731 0.81399 1.87964 1.88019 1.21951 1.33762 1.23110 1.01863 0.79285 1.03370 0.88549 0.92834 0.93138 0.89633 0.90877 0.81084 0.80301 0.88642 0.88543 0.89821 0.95115 0.93517 0.92521 0.93191 0.89828 0.90979 0.94363 0.91034 0.88226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.41 -7.22 8.83 -144.34 -1.27 -8.50 16 3 C 0.05 0.80 5.60 71.98 0.40 1.20 16 4 C 0.09 1.86 2.55 30.60 0.08 1.94 16 5 H 0.08 1.74 7.79 -2.39 -0.02 1.72 16 6 C -0.61 -11.76 5.90 71.98 0.42 -11.34 16 7 S 2.60 84.73 5.25 -56.49 -0.30 84.44 16 8 O -1.00 -40.43 16.59 -127.65 -2.12 -42.54 16 9 O -0.98 -36.80 15.91 -123.49 -1.97 -38.77 16 10 N -1.00 -34.09 3.23 -513.84 -1.66 -35.74 16 11 C 0.12 3.70 6.40 86.22 0.55 4.25 16 12 C -0.13 -4.92 6.06 30.53 0.19 -4.74 16 13 C -0.10 -4.76 4.96 30.62 0.15 -4.61 16 14 C 0.03 1.68 2.25 -11.46 -0.03 1.66 16 15 H -0.02 -1.23 8.14 -2.39 -0.02 -1.25 16 16 C -0.53 -28.84 8.56 25.60 0.22 -28.62 16 17 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 18 C 0.01 0.53 5.30 84.65 0.45 0.98 16 19 N -0.92 -53.98 11.32 21.45 0.24 -53.74 16 20 Si 0.96 43.33 29.54 68.60 2.03 45.35 16 21 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 22 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 23 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 24 C 0.13 5.22 5.66 86.36 0.49 5.71 16 25 O -0.40 -10.18 9.38 -133.76 -1.26 -11.43 16 26 C 0.02 0.42 10.71 113.37 1.21 1.64 16 27 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.05 0.45 8.14 -2.38 -0.02 0.43 16 29 H 0.05 0.46 8.14 -2.38 -0.02 0.44 16 30 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.17 2.39 8.14 -2.39 -0.02 2.38 16 33 H 0.18 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.10 2.67 6.85 -2.39 -0.02 2.65 16 35 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 37 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 38 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 39 H 0.06 3.04 6.05 -2.39 -0.01 3.02 16 40 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 41 H 0.08 2.83 8.14 -2.38 -0.02 2.82 16 42 H 0.07 2.91 6.86 -2.39 -0.02 2.89 16 43 H 0.04 0.84 8.09 -2.38 -0.02 0.82 16 44 H 0.07 1.38 6.40 -2.39 -0.02 1.36 16 45 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -76.47 368.42 0.04 -76.43 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 0.96 Total: 14.91 kcal Atomic # 6 Polarization: -35.80 SS G_CDS: 5.39 Total: -30.41 kcal Atomic # 7 Polarization: -88.06 SS G_CDS: -1.42 Total: -89.48 kcal Atomic # 8 Polarization: -94.62 SS G_CDS: -6.61 Total: -101.24 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 16 Polarization: 84.73 SS G_CDS: -0.30 Total: 84.44 kcal Total: -76.47 0.04 -76.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603378953.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.939 kcal (2) G-P(sol) polarization free energy of solvation -76.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds