Wall clock time and date at job start Fri Apr 10 2020 18:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42909 * 113.99898 * 2 1 4 4 C 1.52994 * 109.47224 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47073 * 305.00050 * 4 3 2 6 6 C 1.53002 * 109.47298 * 185.00060 * 4 3 2 7 7 S 1.81400 * 109.47236 * 179.97438 * 6 4 3 8 8 O 1.42098 * 110.53994 * 68.37532 * 7 6 4 9 9 O 1.42096 * 110.54034 * 291.62600 * 7 6 4 10 10 N 1.65595 * 104.44862 * 179.97438 * 7 6 4 11 11 C 1.46931 * 120.63003 * 89.99727 * 10 7 6 12 12 C 1.53200 * 108.77279 * 126.37081 * 11 10 7 13 13 C 1.53039 * 109.31160 * 54.63574 * 12 11 10 14 14 C 1.53046 * 109.52798 * 298.64112 * 13 12 11 15 15 H 1.08994 * 109.49581 * 301.40708 * 14 13 12 16 16 C 1.50700 * 109.49577 * 181.31010 * 14 13 12 17 17 H 1.07998 * 120.00200 * 239.99881 * 16 14 13 18 18 C 1.37878 * 120.00002 * 60.00123 * 16 14 13 19 19 N 1.31521 * 120.00111 * 359.97438 * 18 16 14 20 20 Si 1.86796 * 119.99984 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47260 * 59.99839 * 20 18 16 22 22 H 1.48503 * 109.47228 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47253 * 300.00182 * 20 18 16 24 24 C 1.46928 * 120.63205 * 269.97699 * 10 7 6 25 25 O 1.42898 * 109.47237 * 65.00091 * 4 3 2 26 26 C 1.42904 * 114.00257 * 269.99985 * 25 4 3 27 27 H 1.08991 * 109.47397 * 299.99801 * 1 2 3 28 28 H 1.09000 * 109.47094 * 60.00072 * 1 2 3 29 29 H 1.08999 * 109.46912 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46565 * 59.99688 * 3 2 1 31 31 H 1.08999 * 109.46945 * 300.00089 * 3 2 1 32 32 H 1.08999 * 109.46746 * 59.99960 * 6 4 3 33 33 H 1.08995 * 109.46719 * 300.00477 * 6 4 3 34 34 H 1.08998 * 109.58425 * 6.59030 * 11 10 7 35 35 H 1.08995 * 109.70793 * 246.22649 * 11 10 7 36 36 H 1.08997 * 109.49280 * 294.68615 * 12 11 10 37 37 H 1.08996 * 109.52417 * 174.60413 * 12 11 10 38 38 H 1.09002 * 109.46050 * 58.65698 * 13 12 11 39 39 H 1.09004 * 109.46034 * 178.62914 * 13 12 11 40 40 H 0.96991 * 119.99542 * 179.97438 * 19 18 16 41 41 H 1.08999 * 109.58766 * 353.42088 * 24 10 7 42 42 H 1.09002 * 109.58364 * 113.70184 * 24 10 7 43 43 H 1.08996 * 109.47098 * 300.00382 * 26 25 4 44 44 H 1.09006 * 109.46981 * 59.99473 * 26 25 4 45 45 H 1.08996 * 109.47420 * 179.97438 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 0.0006 5 1 3.8507 0.5686 0.8427 6 6 4.1572 2.5771 0.1264 7 16 5.9656 2.4338 0.1279 8 8 6.4336 2.0145 -1.1466 9 8 6.4145 1.8004 1.3180 10 7 6.5035 3.9938 0.2668 11 6 6.7369 4.5902 1.5892 12 6 8.1637 5.1465 1.6343 13 6 8.3676 6.1120 0.4644 14 6 8.1830 5.3614 -0.8565 15 1 8.8959 4.5387 -0.9101 16 6 8.4156 6.3052 -2.0080 17 1 7.6270 6.4901 -2.7225 18 6 9.6351 6.9328 -2.1496 19 7 10.5952 6.7081 -1.2793 20 14 9.9236 8.1021 -3.5774 21 1 8.9504 9.2214 -3.5049 22 1 11.3053 8.6414 -3.5042 23 1 9.7446 7.3728 -4.8585 24 6 6.7569 4.8077 -0.9299 25 8 3.9658 0.5794 -1.2201 26 6 4.0473 -0.8462 -1.1648 27 1 -0.3634 0.5137 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6885 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8289 3.0388 1.0576 33 1 3.8418 3.1932 -0.7156 34 1 6.6173 3.8286 2.3598 35 1 6.0245 5.3973 1.7594 36 1 8.8767 4.3258 1.5572 37 1 8.3186 5.6761 2.5742 38 1 7.6380 6.9193 0.5284 39 1 9.3742 6.5279 0.5081 40 1 11.4532 7.1493 -1.3791 41 1 6.6502 4.1898 -1.8214 42 1 6.0443 5.6316 -0.9690 43 1 4.7578 -1.1398 -0.3922 44 1 3.0654 -1.2575 -0.9305 45 1 4.3804 -1.2288 -2.1296 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603378955.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:32 Heat of formation + Delta-G solvation = -188.184875 kcal Electronic energy + Delta-G solvation = -26689.420620 eV Core-core repulsion = 22833.495397 eV Total energy + Delta-G solvation = -3855.925223 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.00285 -39.25442 -38.21376 -38.05355 -36.95008 -35.17692 -33.71365 -32.70062 -31.82773 -28.82043 -27.53110 -27.01469 -26.41472 -25.13740 -23.34456 -22.84419 -21.12243 -19.70344 -18.85558 -18.31803 -18.15403 -17.98035 -17.14414 -16.94166 -16.65284 -16.45923 -16.22210 -15.76182 -15.42285 -15.10903 -14.97810 -14.83319 -14.40426 -14.24747 -14.10362 -13.78372 -13.46181 -13.35977 -13.20539 -13.12502 -12.95357 -12.84466 -12.68996 -12.67216 -12.52382 -12.23068 -12.13175 -11.84827 -11.82112 -11.75324 -11.54044 -11.02057 -10.82678 -10.74156 -10.57093 -10.39012 -9.69356 -8.04872 -6.20401 -0.78658 1.44401 1.46776 1.53553 1.68344 2.45730 2.47902 2.63764 2.98655 3.20221 3.21738 3.54383 3.76089 3.82549 3.96672 4.10677 4.30484 4.36686 4.38800 4.39835 4.47009 4.54819 4.60658 4.60826 4.62348 4.67512 4.71822 4.84521 4.85102 4.89529 4.91846 5.01603 5.12385 5.31718 5.38469 5.57264 5.67599 5.77555 5.99545 6.01962 6.13353 6.20985 6.40268 6.92277 7.47724 8.98982 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.021780 B = 0.003274 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.291196 B = 8550.215994 C = 8984.822091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.050 3.950 4 C 0.088 3.912 5 H 0.086 0.914 6 C -0.609 4.609 7 S 2.604 3.396 8 O -0.983 6.983 9 O -0.989 6.989 10 N -1.000 6.000 11 C 0.119 3.881 12 C -0.130 4.130 13 C -0.103 4.103 14 C 0.034 3.966 15 H -0.020 1.020 16 C -0.534 4.534 17 H 0.062 0.938 18 C 0.011 3.989 19 N -0.919 5.919 20 Si 0.957 3.043 21 H -0.264 1.264 22 H -0.288 1.288 23 H -0.275 1.275 24 C 0.135 3.865 25 O -0.402 6.402 26 C 0.020 3.980 27 H 0.055 0.945 28 H 0.047 0.953 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.188 0.812 33 H 0.162 0.838 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.030 0.970 37 H 0.084 0.916 38 H 0.046 0.954 39 H 0.057 0.943 40 H 0.259 0.741 41 H 0.069 0.931 42 H 0.082 0.918 43 H 0.041 0.959 44 H 0.073 0.927 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.819 -8.904 7.068 24.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.332 6.332 3 C -0.028 4.028 4 C 0.028 3.972 5 H 0.104 0.896 6 C -0.740 4.740 7 S 2.702 3.298 8 O -0.973 6.973 9 O -0.980 6.980 10 N -0.838 5.838 11 C -0.006 4.006 12 C -0.169 4.169 13 C -0.142 4.142 14 C 0.014 3.986 15 H -0.002 1.002 16 C -0.573 4.573 17 H 0.081 0.919 18 C -0.188 4.188 19 N -0.558 5.558 20 Si 0.782 3.218 21 H -0.189 1.189 22 H -0.214 1.214 23 H -0.200 1.200 24 C 0.010 3.990 25 O -0.321 6.321 26 C -0.076 4.076 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.115 0.885 30 H 0.108 0.892 31 H 0.086 0.914 32 H 0.205 0.795 33 H 0.180 0.820 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.049 0.951 37 H 0.103 0.897 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.087 0.913 42 H 0.100 0.900 43 H 0.059 0.941 44 H 0.091 0.909 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -20.922 -9.690 6.886 24.063 hybrid contribution 0.224 0.898 -0.714 1.169 sum -20.698 -8.792 6.172 23.319 Atomic orbital electron populations 1.22943 0.79136 1.03922 1.01028 1.87809 1.21760 1.27916 1.95685 1.23069 0.91044 0.85575 1.03062 1.21903 0.94967 0.91526 0.88805 0.89607 1.30601 1.23675 1.04358 1.15381 1.04890 0.79033 0.72888 0.73004 1.93548 1.79619 1.80469 1.43684 1.93509 1.80552 1.74572 1.49349 1.57582 1.80848 1.32341 1.13041 1.21630 0.97225 0.99329 0.82408 1.21894 0.96686 0.98831 0.99474 1.21394 1.01692 0.97085 0.93983 1.18899 0.91456 0.93805 0.94408 1.00228 1.21509 0.98826 1.26131 1.10785 0.91942 1.25776 0.95915 0.98474 0.98628 1.70045 1.04327 1.44357 1.37099 0.85636 0.77095 0.79330 0.79719 1.18889 1.21377 1.20022 1.21499 0.98379 0.94190 0.84941 1.88000 1.88003 1.22031 1.34117 1.23105 1.01931 0.79251 1.03293 0.92601 0.93412 0.88531 0.89201 0.91398 0.79456 0.81991 0.88384 0.88361 0.95088 0.89738 0.93561 0.92472 0.93161 0.91267 0.90019 0.94055 0.90900 0.88656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.41 -7.16 8.83 -144.34 -1.27 -8.43 16 3 C 0.05 0.79 5.60 71.98 0.40 1.19 16 4 C 0.09 1.85 2.55 30.59 0.08 1.93 16 5 H 0.09 1.73 7.79 -2.38 -0.02 1.71 16 6 C -0.61 -11.75 5.90 71.98 0.42 -11.33 16 7 S 2.60 84.61 5.25 -56.49 -0.30 84.32 16 8 O -0.98 -41.32 15.92 -123.49 -1.97 -43.28 16 9 O -0.99 -35.72 16.59 -127.65 -2.12 -37.83 16 10 N -1.00 -34.09 3.22 -513.10 -1.65 -35.74 16 11 C 0.12 3.52 6.43 86.36 0.56 4.08 16 12 C -0.13 -4.86 6.08 30.67 0.19 -4.67 16 13 C -0.10 -4.78 4.96 30.62 0.15 -4.63 16 14 C 0.03 1.75 2.25 -11.47 -0.03 1.73 16 15 H -0.02 -1.24 8.14 -2.39 -0.02 -1.26 16 16 C -0.53 -29.34 8.56 25.60 0.22 -29.12 16 17 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 18 C 0.01 0.59 5.30 84.65 0.45 1.04 16 19 N -0.92 -54.14 11.31 21.45 0.24 -53.90 16 20 Si 0.96 43.74 29.54 68.60 2.03 45.77 16 21 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 22 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 23 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 24 C 0.13 5.43 5.65 86.35 0.49 5.92 16 25 O -0.40 -10.94 9.38 -133.77 -1.26 -12.20 16 26 C 0.02 0.45 10.71 113.37 1.21 1.67 16 27 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.09 0.90 8.14 -2.38 -0.02 0.89 16 31 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.19 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.16 2.68 8.14 -2.39 -0.02 2.66 16 34 H 0.10 2.55 6.86 -2.39 -0.02 2.54 16 35 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 38 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.06 3.07 6.04 -2.39 -0.01 3.05 16 40 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 41 H 0.07 2.92 6.86 -2.39 -0.02 2.91 16 42 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 43 H 0.04 0.91 8.08 -2.39 -0.02 0.89 16 44 H 0.07 1.44 6.40 -2.38 -0.02 1.43 16 45 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -77.47 368.43 0.05 -77.41 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 0.96 Total: 14.56 kcal Atomic # 6 Polarization: -36.06 SS G_CDS: 5.39 Total: -30.67 kcal Atomic # 7 Polarization: -88.23 SS G_CDS: -1.41 Total: -89.64 kcal Atomic # 8 Polarization: -95.13 SS G_CDS: -6.61 Total: -101.75 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 16 Polarization: 84.61 SS G_CDS: -0.30 Total: 84.32 kcal Total: -77.47 0.05 -77.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603378955.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.771 kcal (2) G-P(sol) polarization free energy of solvation -77.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds