Wall clock time and date at job start Fri Apr 10 2020 18:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99725 * 2 1 4 4 C 1.52996 * 109.54599 * 300.51960 * 3 2 1 5 5 N 1.46505 * 109.47081 * 301.04988 * 4 3 2 6 6 S 1.65600 * 119.99985 * 164.95870 * 5 4 3 7 7 O 1.42095 * 104.27800 * 180.79767 * 6 5 4 8 8 O 1.42101 * 104.27454 * 308.65351 * 6 5 4 9 9 C 1.81398 * 104.44974 * 64.72607 * 6 5 4 10 10 C 1.52999 * 109.47088 * 180.02562 * 9 6 5 11 11 C 1.53006 * 109.46861 * 180.02562 * 10 9 6 12 12 C 1.50699 * 109.46760 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00210 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00009 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99989 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47164 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47271 * 119.99664 * 16 14 12 19 19 H 1.48501 * 109.46976 * 240.00076 * 16 14 12 20 20 C 1.53177 * 109.54218 * 60.70013 * 3 2 1 21 21 C 1.53099 * 109.15836 * 63.06053 * 20 3 2 22 22 O 1.42903 * 109.48996 * 57.47720 * 21 20 3 23 23 C 1.42901 * 114.09422 * 298.88805 * 22 21 20 24 24 C 1.53091 * 109.41614 * 61.15604 * 23 22 21 25 25 H 1.09003 * 109.47495 * 178.19774 * 1 2 3 26 26 H 1.08999 * 109.47396 * 298.19737 * 1 2 3 27 27 H 1.09002 * 109.47185 * 58.19744 * 1 2 3 28 28 H 1.08994 * 109.47344 * 181.05082 * 4 3 2 29 29 H 1.08998 * 109.47502 * 61.04712 * 4 3 2 30 30 H 0.97000 * 119.99640 * 344.68841 * 5 4 3 31 31 H 1.09004 * 109.46816 * 300.00040 * 9 6 5 32 32 H 1.08998 * 109.46958 * 59.99473 * 9 6 5 33 33 H 1.09004 * 109.47009 * 299.99535 * 10 9 6 34 34 H 1.08996 * 109.47527 * 59.99989 * 10 9 6 35 35 H 1.08997 * 109.46945 * 299.99179 * 11 10 9 36 36 H 1.08996 * 109.47133 * 59.99657 * 11 10 9 37 37 H 0.96995 * 119.99787 * 180.02562 * 15 14 12 38 38 H 1.09003 * 109.52259 * 182.88108 * 20 3 2 39 39 H 1.09004 * 109.52036 * 303.06385 * 20 3 2 40 40 H 1.09002 * 109.40744 * 297.48782 * 21 20 3 41 41 H 1.09008 * 109.49020 * 177.51023 * 21 20 3 42 42 H 1.09002 * 109.48044 * 301.17386 * 23 22 21 43 43 H 1.08994 * 109.49473 * 181.14881 * 23 22 21 44 44 H 1.09001 * 109.52010 * 182.48872 * 24 23 22 45 45 H 1.08998 * 109.57436 * 62.33057 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5495 2.0709 -1.2420 5 7 1.9501 1.3365 -2.4448 6 16 1.2775 1.7166 -3.9095 7 8 1.8788 0.8048 -4.8184 8 8 -0.1228 1.6944 -3.6684 9 6 1.8398 3.4092 -4.2402 10 6 1.2771 3.8804 -5.5827 11 6 1.7519 5.3078 -5.8620 12 6 1.1982 5.7716 -7.1845 13 1 0.5701 5.1143 -7.7674 14 6 1.4926 7.0357 -7.6500 15 7 2.2571 7.8363 -6.9400 16 14 0.8057 7.6109 -9.2891 17 1 -0.0184 6.5300 -9.8872 18 1 -0.0359 8.8160 -9.0776 19 1 1.9256 7.9437 -10.2057 20 6 1.5732 2.0609 1.2589 21 6 2.1079 1.3310 2.4939 22 8 3.5306 1.2274 2.4078 23 6 3.9943 0.4892 1.2755 24 6 3.5373 1.1865 -0.0086 25 1 -0.3634 -1.0272 -0.0323 26 1 -0.3634 0.4856 0.9057 27 1 -0.3634 0.5416 -0.8734 28 1 2.0081 3.0596 -1.2505 29 1 0.4645 2.1738 -1.2238 30 1 2.6122 0.6303 -2.3837 31 1 1.4889 4.0700 -3.4475 32 1 2.9290 3.4299 -4.2749 33 1 1.6276 3.2196 -6.3756 34 1 0.1879 3.8597 -5.5476 35 1 1.4017 5.9688 -5.0692 36 1 2.8411 5.3280 -5.8973 37 1 2.4639 8.7257 -7.2673 38 1 1.9749 3.0739 1.2336 39 1 0.4847 2.1006 1.3003 40 1 1.6729 0.3326 2.5411 41 1 1.8376 1.8880 3.3910 42 1 3.5841 -0.5202 1.3067 43 1 5.0830 0.4398 1.2945 44 1 3.8522 0.6013 -0.8726 45 1 3.9799 2.1812 -0.0613 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610958016.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:48 Heat of formation + Delta-G solvation = -179.975337 kcal Electronic energy + Delta-G solvation = -26205.336007 eV Core-core repulsion = 22349.766776 eV Total energy + Delta-G solvation = -3855.569231 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.66445 -37.72643 -36.91800 -35.79874 -35.14588 -34.70609 -32.49254 -32.21680 -31.59602 -27.84498 -27.29718 -27.10324 -23.98530 -23.73665 -22.98400 -20.72027 -20.24397 -19.24340 -17.71440 -17.10346 -16.98986 -16.53319 -16.31122 -15.81633 -15.73686 -15.65540 -15.47710 -14.91318 -14.78810 -14.50352 -14.12520 -13.58144 -13.29978 -13.08014 -12.94119 -12.67185 -12.61987 -12.30444 -11.98819 -11.94391 -11.86981 -11.82071 -11.79026 -11.59651 -11.27252 -10.96014 -10.93481 -10.86304 -10.72039 -10.44801 -10.09341 -9.99144 -9.80439 -9.66462 -9.34456 -9.10347 -8.43690 -6.08381 -4.11422 0.41776 2.77250 3.27598 3.35230 3.37115 3.40125 3.55627 3.88741 4.15473 4.18638 4.27652 4.40397 4.41733 4.57997 4.86991 4.88413 5.00134 5.02097 5.09241 5.11070 5.13747 5.15558 5.21807 5.28277 5.30565 5.34168 5.40836 5.53688 5.57538 5.63474 5.70651 5.78628 5.84742 6.22853 6.40765 6.77356 6.83474 6.85647 6.90579 7.53915 7.63447 7.89692 8.30042 8.95049 9.53535 11.02881 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.021739 B = 0.002712 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.701269 B =10323.020369 C =10903.441184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.370 6.370 3 C 0.112 3.888 4 C 0.089 3.911 5 N -1.117 6.117 6 S 2.601 3.399 7 O -0.962 6.962 8 O -0.964 6.964 9 C -0.609 4.609 10 C -0.106 4.106 11 C 0.031 3.969 12 C -0.526 4.526 13 H 0.059 0.941 14 C 0.057 3.943 15 N -0.895 5.895 16 Si 0.894 3.106 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.283 1.283 20 C -0.183 4.183 21 C 0.068 3.932 22 O -0.383 6.383 23 C 0.063 3.937 24 C -0.142 4.142 25 H 0.087 0.913 26 H 0.044 0.956 27 H 0.056 0.944 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.416 0.584 31 H 0.126 0.874 32 H 0.129 0.871 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.020 0.980 36 H 0.021 0.979 37 H 0.261 0.739 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.055 0.945 41 H 0.094 0.906 42 H 0.059 0.941 43 H 0.095 0.905 44 H 0.085 0.915 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.827 -14.293 20.267 24.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.289 6.289 3 C 0.071 3.929 4 C -0.038 4.038 5 N -0.876 5.876 6 S 2.697 3.303 7 O -0.952 6.952 8 O -0.953 6.953 9 C -0.741 4.741 10 C -0.145 4.145 11 C -0.008 4.008 12 C -0.564 4.564 13 H 0.077 0.923 14 C -0.144 4.144 15 N -0.534 5.534 16 Si 0.722 3.278 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.222 4.222 21 C -0.009 4.009 22 O -0.302 6.302 23 C -0.013 4.013 24 C -0.180 4.180 25 H 0.105 0.895 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.096 0.904 29 H 0.104 0.896 30 H 0.252 0.748 31 H 0.144 0.856 32 H 0.148 0.852 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.039 0.961 36 H 0.039 0.961 37 H 0.071 0.929 38 H 0.106 0.894 39 H 0.101 0.899 40 H 0.074 0.926 41 H 0.112 0.888 42 H 0.078 0.922 43 H 0.113 0.887 44 H 0.103 0.897 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.434 -14.672 19.893 24.722 hybrid contribution -0.101 0.927 -0.890 1.289 sum 0.332 -13.744 19.003 23.455 Atomic orbital electron populations 1.22908 0.80962 1.03211 1.00786 1.87946 1.19982 1.26118 1.94811 1.21658 0.94309 0.84097 0.92851 1.21889 1.01344 0.95464 0.85073 1.55594 1.59899 1.49351 1.22802 1.05305 0.74677 0.77782 0.72584 1.93582 1.78260 1.60984 1.62374 1.93555 1.30554 1.87199 1.84036 1.30549 1.12350 1.21862 1.09318 1.21504 1.00171 1.02685 0.90180 1.19065 0.96824 0.87919 0.96970 1.21291 1.31015 0.99476 1.04653 0.92314 1.25023 0.95105 0.96731 0.97536 1.69963 1.37079 1.08284 1.38087 0.86499 0.78883 0.78728 0.83709 1.19596 1.20927 1.20920 1.22787 1.02593 1.01214 0.95602 1.22452 0.81412 0.99920 0.97147 1.87930 1.21234 1.75256 1.45756 1.22539 0.99626 0.94707 0.84449 1.22220 0.92454 1.03386 0.99937 0.89490 0.93796 0.92566 0.90409 0.89619 0.74842 0.85610 0.85224 0.91552 0.91579 0.96145 0.96102 0.92934 0.89353 0.89858 0.92632 0.88797 0.92228 0.88708 0.89692 0.89076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 10.22 101.05 1.03 1.18 16 2 O -0.37 -3.43 9.16 -35.23 -0.32 -3.75 16 3 C 0.11 0.91 0.40 -90.44 -0.04 0.88 16 4 C 0.09 0.81 4.63 -4.04 -0.02 0.79 16 5 N -1.12 -11.70 5.60 -10.61 -0.06 -11.76 16 6 S 2.60 37.11 5.46 -107.50 -0.59 36.52 16 7 O -0.96 -16.75 18.08 -57.54 -1.04 -17.79 16 8 O -0.96 -16.31 17.51 -57.54 -1.01 -17.31 16 9 C -0.61 -9.05 6.07 37.16 0.23 -8.82 16 10 C -0.11 -2.12 5.16 -26.73 -0.14 -2.26 16 11 C 0.03 0.77 4.97 -27.88 -0.14 0.63 16 12 C -0.53 -14.74 9.11 -34.44 -0.31 -15.05 16 13 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -26.40 13.29 55.43 0.74 -25.67 16 16 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 17 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 C -0.18 -1.27 4.66 -26.59 -0.12 -1.40 16 21 C 0.07 0.49 6.69 37.21 0.25 0.74 16 22 O -0.38 -3.52 10.77 -35.23 -0.38 -3.90 16 23 C 0.06 0.49 6.69 37.20 0.25 0.74 16 24 C -0.14 -1.06 4.94 -26.59 -0.13 -1.19 16 25 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.04 0.29 6.46 -51.93 -0.34 -0.05 16 27 H 0.06 0.54 6.34 -51.93 -0.33 0.21 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.09 0.80 6.12 -51.93 -0.32 0.48 16 30 H 0.42 3.87 7.17 -34.47 -0.25 3.63 16 31 H 0.13 1.63 8.14 -51.92 -0.42 1.21 16 32 H 0.13 1.72 8.14 -51.93 -0.42 1.30 16 33 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 34 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 38 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 0.50 6.45 -51.93 -0.33 0.16 16 40 H 0.06 0.41 7.82 -51.93 -0.41 0.00 16 41 H 0.09 0.55 8.14 -51.92 -0.42 0.13 16 42 H 0.06 0.48 7.82 -51.93 -0.41 0.07 16 43 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.08 0.59 6.77 -51.93 -0.35 0.24 16 45 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 368.44 15.07 5.55 5.55 Total: -1.00 -35.45 368.44 -8.71 -44.17 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -7.34 Total: -0.27 kcal Atomic # 6 Polarization: -23.00 SS G_CDS: 0.76 Total: -22.24 kcal Atomic # 7 Polarization: -38.10 SS G_CDS: 0.68 Total: -37.42 kcal Atomic # 8 Polarization: -40.01 SS G_CDS: -2.75 Total: -42.76 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 37.11 SS G_CDS: -0.59 Total: 36.52 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.45 -8.71 -44.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610958016.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.810 kcal (2) G-P(sol) polarization free energy of solvation -35.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds