Wall clock time and date at job start Fri Apr 10 2020 18:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99725 * 2 1 4 4 C 1.52996 * 109.54599 * 300.51960 * 3 2 1 5 5 N 1.46505 * 109.47081 * 301.04988 * 4 3 2 6 6 S 1.65600 * 119.99985 * 164.95870 * 5 4 3 7 7 O 1.42095 * 104.27800 * 180.79767 * 6 5 4 8 8 O 1.42101 * 104.27454 * 308.65351 * 6 5 4 9 9 C 1.81398 * 104.44974 * 64.72607 * 6 5 4 10 10 C 1.52999 * 109.47088 * 180.02562 * 9 6 5 11 11 C 1.53006 * 109.46861 * 180.02562 * 10 9 6 12 12 C 1.50699 * 109.46760 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00210 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00009 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99989 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47164 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47271 * 119.99664 * 16 14 12 19 19 H 1.48501 * 109.46976 * 240.00076 * 16 14 12 20 20 C 1.53177 * 109.54218 * 60.70013 * 3 2 1 21 21 C 1.53099 * 109.15836 * 63.06053 * 20 3 2 22 22 O 1.42903 * 109.48996 * 57.47720 * 21 20 3 23 23 C 1.42901 * 114.09422 * 298.88805 * 22 21 20 24 24 C 1.53091 * 109.41614 * 61.15604 * 23 22 21 25 25 H 1.09003 * 109.47495 * 178.19774 * 1 2 3 26 26 H 1.08999 * 109.47396 * 298.19737 * 1 2 3 27 27 H 1.09002 * 109.47185 * 58.19744 * 1 2 3 28 28 H 1.08994 * 109.47344 * 181.05082 * 4 3 2 29 29 H 1.08998 * 109.47502 * 61.04712 * 4 3 2 30 30 H 0.97000 * 119.99640 * 344.68841 * 5 4 3 31 31 H 1.09004 * 109.46816 * 300.00040 * 9 6 5 32 32 H 1.08998 * 109.46958 * 59.99473 * 9 6 5 33 33 H 1.09004 * 109.47009 * 299.99535 * 10 9 6 34 34 H 1.08996 * 109.47527 * 59.99989 * 10 9 6 35 35 H 1.08997 * 109.46945 * 299.99179 * 11 10 9 36 36 H 1.08996 * 109.47133 * 59.99657 * 11 10 9 37 37 H 0.96995 * 119.99787 * 180.02562 * 15 14 12 38 38 H 1.09003 * 109.52259 * 182.88108 * 20 3 2 39 39 H 1.09004 * 109.52036 * 303.06385 * 20 3 2 40 40 H 1.09002 * 109.40744 * 297.48782 * 21 20 3 41 41 H 1.09008 * 109.49020 * 177.51023 * 21 20 3 42 42 H 1.09002 * 109.48044 * 301.17386 * 23 22 21 43 43 H 1.08994 * 109.49473 * 181.14881 * 23 22 21 44 44 H 1.09001 * 109.52010 * 182.48872 * 24 23 22 45 45 H 1.08998 * 109.57436 * 62.33057 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5495 2.0709 -1.2420 5 7 1.9501 1.3365 -2.4448 6 16 1.2775 1.7166 -3.9095 7 8 1.8788 0.8048 -4.8184 8 8 -0.1228 1.6944 -3.6684 9 6 1.8398 3.4092 -4.2402 10 6 1.2771 3.8804 -5.5827 11 6 1.7519 5.3078 -5.8620 12 6 1.1982 5.7716 -7.1845 13 1 0.5701 5.1143 -7.7674 14 6 1.4926 7.0357 -7.6500 15 7 2.2571 7.8363 -6.9400 16 14 0.8057 7.6109 -9.2891 17 1 -0.0184 6.5300 -9.8872 18 1 -0.0359 8.8160 -9.0776 19 1 1.9256 7.9437 -10.2057 20 6 1.5732 2.0609 1.2589 21 6 2.1079 1.3310 2.4939 22 8 3.5306 1.2274 2.4078 23 6 3.9943 0.4892 1.2755 24 6 3.5373 1.1865 -0.0086 25 1 -0.3634 -1.0272 -0.0323 26 1 -0.3634 0.4856 0.9057 27 1 -0.3634 0.5416 -0.8734 28 1 2.0081 3.0596 -1.2505 29 1 0.4645 2.1738 -1.2238 30 1 2.6122 0.6303 -2.3837 31 1 1.4889 4.0700 -3.4475 32 1 2.9290 3.4299 -4.2749 33 1 1.6276 3.2196 -6.3756 34 1 0.1879 3.8597 -5.5476 35 1 1.4017 5.9688 -5.0692 36 1 2.8411 5.3280 -5.8973 37 1 2.4639 8.7257 -7.2673 38 1 1.9749 3.0739 1.2336 39 1 0.4847 2.1006 1.3003 40 1 1.6729 0.3326 2.5411 41 1 1.8376 1.8880 3.3910 42 1 3.5841 -0.5202 1.3067 43 1 5.0830 0.4398 1.2945 44 1 3.8522 0.6013 -0.8726 45 1 3.9799 2.1812 -0.0613 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610958016.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:47 Heat of formation + Delta-G solvation = -207.478510 kcal Electronic energy + Delta-G solvation = -26206.528634 eV Core-core repulsion = 22349.766776 eV Total energy + Delta-G solvation = -3856.761858 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.28135 -38.40413 -38.15571 -37.07493 -36.47636 -35.94565 -34.17273 -33.16853 -32.14815 -29.66470 -28.00055 -27.73788 -25.63740 -24.52982 -23.63151 -22.43419 -20.86666 -20.36318 -18.79735 -18.58886 -17.83315 -17.71166 -17.12899 -16.91871 -16.69510 -16.48622 -16.34692 -16.22311 -15.91135 -15.51687 -15.27846 -14.52757 -14.34593 -14.04894 -13.97037 -13.64668 -13.62061 -13.51775 -13.26559 -13.20641 -13.13141 -12.99656 -12.84963 -12.78200 -12.61312 -12.43940 -12.17319 -12.15725 -11.76471 -11.53528 -11.38100 -11.29824 -11.13292 -10.70924 -10.58666 -10.46909 -10.25288 -8.23689 -6.34408 -0.76342 1.38970 1.39984 1.52935 1.74546 2.39109 2.73371 2.75526 3.00108 3.10047 3.20975 3.50946 3.59048 3.71260 3.76600 3.93013 4.03624 4.23869 4.34192 4.37647 4.42725 4.43330 4.48477 4.52107 4.63750 4.66585 4.70243 4.77175 4.81606 4.90959 4.92964 4.95898 5.05844 5.08242 5.11614 5.22134 5.44903 5.62378 5.78857 6.02605 6.19107 6.21928 6.28671 6.81413 7.35036 8.87916 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.021739 B = 0.002712 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.701269 B =10323.020369 C =10903.441184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.382 6.382 3 C 0.111 3.889 4 C 0.078 3.922 5 N -1.103 6.103 6 S 2.630 3.370 7 O -0.993 6.993 8 O -0.989 6.989 9 C -0.608 4.608 10 C -0.107 4.107 11 C 0.031 3.969 12 C -0.552 4.552 13 H 0.059 0.941 14 C 0.003 3.997 15 N -0.929 5.929 16 Si 0.962 3.038 17 H -0.265 1.265 18 H -0.276 1.276 19 H -0.277 1.277 20 C -0.181 4.181 21 C 0.065 3.935 22 O -0.401 6.401 23 C 0.062 3.938 24 C -0.144 4.144 25 H 0.092 0.908 26 H 0.061 0.939 27 H 0.041 0.959 28 H 0.099 0.901 29 H 0.084 0.916 30 H 0.424 0.576 31 H 0.147 0.853 32 H 0.147 0.853 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.005 0.995 36 H 0.003 0.997 37 H 0.265 0.735 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.052 0.948 41 H 0.107 0.893 42 H 0.053 0.947 43 H 0.106 0.894 44 H 0.088 0.912 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.696 -14.385 20.867 25.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.301 6.301 3 C 0.070 3.930 4 C -0.048 4.048 5 N -0.865 5.865 6 S 2.725 3.275 7 O -0.984 6.984 8 O -0.979 6.979 9 C -0.739 4.739 10 C -0.146 4.146 11 C -0.007 4.007 12 C -0.590 4.590 13 H 0.077 0.923 14 C -0.195 4.195 15 N -0.569 5.569 16 Si 0.787 3.213 17 H -0.189 1.189 18 H -0.202 1.202 19 H -0.202 1.202 20 C -0.219 4.219 21 C -0.012 4.012 22 O -0.320 6.320 23 C -0.014 4.014 24 C -0.181 4.181 25 H 0.111 0.889 26 H 0.079 0.921 27 H 0.060 0.940 28 H 0.117 0.883 29 H 0.102 0.898 30 H 0.262 0.738 31 H 0.165 0.835 32 H 0.166 0.834 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.023 0.977 36 H 0.022 0.978 37 H 0.074 0.926 38 H 0.113 0.887 39 H 0.111 0.889 40 H 0.070 0.930 41 H 0.125 0.875 42 H 0.071 0.929 43 H 0.124 0.876 44 H 0.107 0.893 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.302 -14.773 20.488 25.261 hybrid contribution -0.044 0.936 -0.988 1.362 sum 0.259 -13.837 19.500 23.912 Atomic orbital electron populations 1.22979 0.80643 1.03648 1.00958 1.87936 1.20426 1.26871 1.94867 1.21739 0.94667 0.83760 0.92854 1.22189 1.01638 0.96471 0.84535 1.55183 1.59850 1.49533 1.21922 1.04211 0.73785 0.76760 0.72702 1.93535 1.78683 1.61903 1.64234 1.93522 1.32399 1.87348 1.84618 1.30496 1.13436 1.22922 1.07074 1.21317 1.00417 0.99722 0.93187 1.18960 0.95541 0.90739 0.95453 1.21771 1.31222 0.99973 1.06052 0.92272 1.25918 0.95367 0.96915 1.01304 1.70067 1.38171 1.08744 1.39907 0.85443 0.78369 0.78376 0.79158 1.18859 1.20171 1.20250 1.22785 1.03251 1.01226 0.94674 1.22563 0.80634 1.00066 0.97913 1.87906 1.22261 1.75458 1.46380 1.22597 1.00306 0.94256 0.84247 1.22264 0.92043 1.03887 0.99949 0.88946 0.92051 0.94041 0.88255 0.89814 0.73840 0.83468 0.83447 0.91735 0.91526 0.97691 0.97850 0.92622 0.88701 0.88878 0.92953 0.87476 0.92869 0.87602 0.89311 0.88318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 10.22 113.37 1.16 1.37 16 2 O -0.38 -6.52 9.16 -148.98 -1.36 -7.89 16 3 C 0.11 1.59 0.40 -10.68 0.00 1.59 16 4 C 0.08 1.24 4.63 86.38 0.40 1.64 16 5 N -1.10 -21.17 5.60 -187.49 -1.05 -22.22 16 6 S 2.63 72.05 5.46 -56.49 -0.31 71.74 16 7 O -0.99 -33.84 18.08 -127.65 -2.31 -36.15 16 8 O -0.99 -32.60 17.51 -127.65 -2.23 -34.83 16 9 C -0.61 -17.26 6.07 71.98 0.44 -16.83 16 10 C -0.11 -4.26 5.16 30.60 0.16 -4.11 16 11 C 0.03 1.59 4.97 29.85 0.15 1.74 16 12 C -0.55 -31.17 9.11 25.60 0.23 -30.94 16 13 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 14 C 0.00 0.18 5.46 84.66 0.46 0.65 16 15 N -0.93 -55.15 13.29 21.45 0.28 -54.86 16 16 Si 0.96 43.91 29.54 68.60 2.03 45.94 16 17 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 18 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 19 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 20 C -0.18 -2.12 4.66 30.69 0.14 -1.98 16 21 C 0.06 0.83 6.69 72.02 0.48 1.32 16 22 O -0.40 -6.77 10.77 -148.98 -1.60 -8.37 16 23 C 0.06 0.87 6.69 72.01 0.48 1.35 16 24 C -0.14 -1.87 4.94 30.68 0.15 -1.72 16 25 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.06 0.69 6.46 -2.39 -0.02 0.68 16 27 H 0.04 0.75 6.34 -2.39 -0.02 0.74 16 28 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.08 1.41 6.12 -2.39 -0.01 1.39 16 30 H 0.42 7.15 7.17 -96.74 -0.69 6.46 16 31 H 0.15 3.52 8.14 -2.39 -0.02 3.50 16 32 H 0.15 3.66 8.14 -2.39 -0.02 3.64 16 33 H 0.06 2.54 8.14 -2.38 -0.02 2.52 16 34 H 0.07 2.59 8.14 -2.39 -0.02 2.58 16 35 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 36 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 37 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 38 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.09 0.90 6.45 -2.39 -0.02 0.89 16 40 H 0.05 0.70 7.82 -2.39 -0.02 0.68 16 41 H 0.11 1.06 8.14 -2.38 -0.02 1.04 16 42 H 0.05 0.80 7.82 -2.39 -0.02 0.78 16 43 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.09 1.07 6.77 -2.39 -0.02 1.05 16 45 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -75.45 368.44 -2.02 -77.47 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 0.29 Total: 15.10 kcal Atomic # 6 Polarization: -50.17 SS G_CDS: 4.25 Total: -45.92 kcal Atomic # 7 Polarization: -76.32 SS G_CDS: -0.77 Total: -77.08 kcal Atomic # 8 Polarization: -79.73 SS G_CDS: -7.51 Total: -87.24 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: 72.05 SS G_CDS: -0.31 Total: 71.74 kcal Total: -75.45 -2.02 -77.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610958016.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.010 kcal (2) G-P(sol) polarization free energy of solvation -75.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds