Wall clock time and date at job start Fri Apr 10 2020 18:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46912 * 2 1 4 4 H 1.08997 * 109.47216 * 305.27845 * 3 2 1 5 5 C 1.50698 * 109.47187 * 185.28364 * 3 2 1 6 6 H 1.07997 * 120.00327 * 245.75057 * 5 3 2 7 7 C 1.37880 * 120.00244 * 65.74890 * 5 3 2 8 8 N 1.31511 * 120.00096 * 192.34880 * 7 5 3 9 9 Si 1.86803 * 119.99917 * 12.34296 * 7 5 3 10 10 H 1.48498 * 109.46947 * 89.46625 * 9 7 5 11 11 H 1.48493 * 109.46978 * 209.47060 * 9 7 5 12 12 H 1.48508 * 109.47000 * 329.47086 * 9 7 5 13 13 C 1.52995 * 109.47261 * 65.28529 * 3 2 1 14 14 H 1.08992 * 109.47366 * 54.44934 * 13 3 2 15 15 N 1.46500 * 109.47031 * 294.44666 * 13 3 2 16 16 C 1.34776 * 120.00199 * 152.87878 * 15 13 3 17 17 O 1.21504 * 120.00121 * 0.02562 * 16 15 13 18 18 O 1.34634 * 120.00005 * 180.02562 * 16 15 13 19 19 C 1.45205 * 117.00283 * 180.02562 * 18 16 15 20 20 C 1.50697 * 109.47647 * 180.02562 * 19 18 16 21 21 C 1.38236 * 119.99883 * 269.72542 * 20 19 18 22 22 C 1.38230 * 119.99592 * 179.76307 * 21 20 19 23 23 C 1.38231 * 120.00178 * 0.50929 * 22 21 20 24 24 C 1.38231 * 120.00205 * 359.74523 * 23 22 21 25 25 C 1.38233 * 119.99732 * 89.99465 * 20 19 18 26 26 C 1.50703 * 109.47257 * 174.45236 * 13 3 2 27 27 O 1.20823 * 120.00366 * 119.99542 * 26 13 3 28 28 O 1.34231 * 119.99632 * 299.71871 * 26 13 3 29 29 H 1.09005 * 109.47083 * 50.97878 * 1 2 3 30 30 H 1.09000 * 109.46673 * 170.97063 * 1 2 3 31 31 H 1.08990 * 109.47627 * 290.97059 * 1 2 3 32 32 H 1.08997 * 109.47297 * 240.00273 * 2 1 3 33 33 H 1.08996 * 109.46855 * 119.99599 * 2 1 3 34 34 H 0.97001 * 119.99750 * 179.97438 * 8 7 5 35 35 H 0.97003 * 120.00249 * 332.88118 * 15 13 3 36 36 H 1.09004 * 109.46510 * 300.00498 * 19 18 16 37 37 H 1.09002 * 109.47202 * 59.99476 * 19 18 16 38 38 H 1.08000 * 119.99867 * 0.02562 * 21 20 19 39 39 H 1.08002 * 119.99566 * 180.23062 * 22 21 20 40 40 H 1.08007 * 120.00055 * 179.72753 * 23 22 21 41 41 H 1.08003 * 120.00321 * 179.97438 * 24 23 22 42 42 H 1.07998 * 120.00690 * 0.02562 * 25 20 19 43 43 H 0.96699 * 116.99752 * 180.27630 * 28 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6015 1.9829 -0.8389 5 6 3.5412 1.4446 -0.1308 6 1 4.1537 1.8031 0.6832 7 6 4.1329 0.9888 -1.2898 8 7 5.4277 0.7605 -1.3213 9 14 3.0954 0.6953 -2.8152 10 1 3.0328 1.9425 -3.6187 11 1 3.7056 -0.3872 -3.6281 12 1 1.7228 0.2973 -2.4113 13 6 1.6413 2.1244 1.3103 14 1 1.9964 1.5299 2.1520 15 7 0.1824 2.2412 1.3759 16 6 -0.4373 2.2819 2.5720 17 8 0.2140 2.2223 3.5961 18 8 -1.7780 2.3887 2.6323 19 6 -2.3776 2.4276 3.9542 20 6 -3.8741 2.5475 3.8238 21 6 -4.4660 3.7959 3.7778 22 6 -5.8383 3.9058 3.6533 23 6 -6.6196 2.7675 3.5854 24 6 -6.0282 1.5192 3.6368 25 6 -4.6553 1.4091 3.7559 26 6 2.2583 3.4981 1.3698 27 8 1.5519 4.4743 1.4578 28 8 3.5928 3.6366 1.3304 29 1 -0.3633 0.6471 -0.7984 30 1 -0.3633 -1.0150 -0.1613 31 1 -0.3634 0.3677 0.9595 32 1 1.8933 -0.5138 -0.8900 33 1 1.8932 -0.5138 0.8900 34 1 5.8438 0.4394 -2.1366 35 1 -0.3376 2.2891 0.5584 36 1 -2.1322 1.5114 4.4914 37 1 -1.9904 3.2856 4.5037 38 1 -3.8559 4.6852 3.8348 39 1 -6.3004 4.8812 3.6135 40 1 -7.6922 2.8535 3.4926 41 1 -6.6386 0.6298 3.5842 42 1 -4.1934 0.4338 3.7967 43 1 3.9422 4.5371 1.3755 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700372769.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:04 Heat of formation + Delta-G solvation = -135.960164 kcal Electronic energy + Delta-G solvation = -27359.269003 eV Core-core repulsion = 23370.164462 eV Total energy + Delta-G solvation = -3989.104541 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.64397 -39.69740 -39.14693 -37.07823 -35.85862 -35.36833 -33.36649 -32.32057 -31.74122 -31.18629 -29.59594 -26.87821 -25.77157 -22.93334 -22.86572 -22.17798 -21.44174 -20.58096 -20.16448 -18.44203 -17.61839 -17.33197 -16.91612 -16.55478 -16.27549 -15.97719 -15.37460 -15.04533 -14.88961 -14.72008 -14.33995 -13.72706 -13.70360 -13.42944 -13.15653 -13.10879 -12.86473 -12.65423 -12.47599 -12.19941 -11.75513 -11.47198 -11.36347 -11.34872 -10.99021 -10.81662 -10.66369 -10.59897 -10.48522 -10.30989 -10.07059 -9.96119 -9.59134 -9.19608 -9.16410 -9.13105 -8.72268 -8.51536 -6.15356 -4.13869 0.88690 1.12880 2.33758 2.91187 2.99474 3.22224 3.31024 3.34790 3.51824 3.87426 4.32237 4.36408 4.55095 4.66775 4.76067 4.85014 5.02000 5.10887 5.18139 5.28538 5.37922 5.46747 5.66864 5.76026 5.78258 5.79199 5.87863 5.96354 6.06274 6.14386 6.21548 6.30028 6.30494 6.51121 6.53089 6.57316 6.68825 6.73103 6.98288 7.19178 7.20243 7.55607 7.61537 8.37327 8.49540 8.65982 9.04991 9.45603 10.96239 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.019737 B = 0.003182 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.339182 B = 8797.472288 C = 9554.752392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.121 4.121 3 C 0.020 3.980 4 H 0.034 0.966 5 C -0.521 4.521 6 H 0.104 0.896 7 C 0.082 3.918 8 N -0.886 5.886 9 Si 0.854 3.146 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.248 1.248 13 C 0.185 3.815 14 H 0.126 0.874 15 N -0.682 5.682 16 C 0.652 3.348 17 O -0.574 6.574 18 O -0.365 6.365 19 C 0.128 3.872 20 C -0.095 4.095 21 C -0.093 4.093 22 C -0.125 4.125 23 C -0.112 4.112 24 C -0.125 4.125 25 C -0.093 4.093 26 C 0.485 3.515 27 O -0.541 6.541 28 O -0.473 6.473 29 H 0.045 0.955 30 H 0.041 0.959 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.264 0.736 35 H 0.411 0.589 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.758 2.187 7.840 21.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.159 4.159 3 C 0.001 3.999 4 H 0.052 0.948 5 C -0.559 4.559 6 H 0.122 0.878 7 C -0.121 4.121 8 N -0.523 5.523 9 Si 0.681 3.319 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.172 1.172 13 C 0.080 3.920 14 H 0.144 0.856 15 N -0.342 5.342 16 C 0.405 3.595 17 O -0.463 6.463 18 O -0.280 6.280 19 C 0.054 3.946 20 C -0.095 4.095 21 C -0.111 4.111 22 C -0.143 4.143 23 C -0.130 4.130 24 C -0.143 4.143 25 C -0.111 4.111 26 C 0.327 3.673 27 O -0.432 6.432 28 O -0.280 6.280 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.249 0.751 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.143 0.857 42 H 0.144 0.856 43 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -19.658 1.947 8.293 21.424 hybrid contribution -0.439 0.561 -1.290 1.473 sum -20.096 2.508 7.004 21.429 Atomic orbital electron populations 1.22266 0.98329 1.00513 1.01344 1.22001 0.92932 0.98559 1.02378 1.19401 0.99003 0.92248 0.89263 0.94844 1.21004 0.87529 1.43422 1.03925 0.87839 1.24861 0.94657 0.94279 0.98273 1.69920 1.10284 1.44212 1.27880 0.87390 0.82302 0.78217 0.84002 1.20681 1.21378 1.17238 1.20806 0.75692 0.90520 1.04945 0.85648 1.44901 1.07166 1.75894 1.06225 1.18063 0.80641 0.75995 0.84771 1.90982 1.65749 1.55934 1.33637 1.86292 1.20719 1.86791 1.34150 1.21672 0.88117 1.03583 0.81260 1.19576 0.93497 0.93863 1.02598 1.21154 0.95093 0.97032 0.97843 1.21165 0.93694 0.98809 1.00615 1.21235 0.99965 0.92676 0.99100 1.21166 0.94719 0.97762 1.00661 1.21138 0.93850 0.98216 0.97923 1.23841 0.80908 0.92341 0.70216 1.90622 1.63338 1.41576 1.47706 1.84996 1.22785 1.36213 1.83982 0.93579 0.93970 0.92251 0.91557 0.92069 0.92551 0.75137 0.90164 0.90228 0.85631 0.85760 0.85939 0.85749 0.85617 0.75395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.66 8.44 37.16 0.31 -2.34 16 2 C -0.12 -2.32 4.67 -26.73 -0.12 -2.45 16 3 C 0.02 0.43 1.15 -91.77 -0.11 0.32 16 4 H 0.03 0.71 6.85 -51.93 -0.36 0.35 16 5 C -0.52 -13.08 7.81 -34.44 -0.27 -13.35 16 6 H 0.10 2.81 5.93 -52.49 -0.31 2.50 16 7 C 0.08 2.18 5.37 -17.82 -0.10 2.08 16 8 N -0.89 -25.30 13.96 55.43 0.77 -24.53 16 9 Si 0.85 19.54 25.80 -169.99 -4.39 15.16 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.25 -5.19 5.33 56.52 0.30 -4.89 16 13 C 0.19 3.62 2.08 -69.08 -0.14 3.48 16 14 H 0.13 2.53 7.51 -51.93 -0.39 2.14 16 15 N -0.68 -11.86 2.27 -59.87 -0.14 -11.99 16 16 C 0.65 11.57 8.09 54.05 0.44 12.01 16 17 O -0.57 -11.58 15.76 -19.28 -0.30 -11.89 16 18 O -0.36 -5.57 10.25 -40.31 -0.41 -5.98 16 19 C 0.13 1.60 5.60 36.00 0.20 1.80 16 20 C -0.10 -1.04 5.52 -104.63 -0.58 -1.62 16 21 C -0.09 -0.93 9.70 -39.58 -0.38 -1.32 16 22 C -0.12 -1.07 10.05 -39.59 -0.40 -1.46 16 23 C -0.11 -0.89 10.05 -39.59 -0.40 -1.29 16 24 C -0.13 -1.05 10.05 -39.58 -0.40 -1.44 16 25 C -0.09 -0.90 9.70 -39.58 -0.38 -1.29 16 26 C 0.48 9.96 7.58 36.01 0.27 10.23 16 27 O -0.54 -11.82 17.14 -18.75 -0.32 -12.14 16 28 O -0.47 -9.20 10.34 -39.26 -0.41 -9.61 16 29 H 0.05 0.69 7.75 -51.93 -0.40 0.29 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.91 5.29 -51.93 -0.27 0.64 16 32 H 0.07 1.36 4.75 -51.93 -0.25 1.11 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.41 6.45 7.19 -40.82 -0.29 6.15 16 36 H 0.08 0.94 8.08 -51.93 -0.42 0.52 16 37 H 0.08 0.98 8.08 -51.93 -0.42 0.56 16 38 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 39 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 40 H 0.12 0.69 8.06 -52.48 -0.42 0.27 16 41 H 0.12 0.77 8.06 -52.48 -0.42 0.34 16 42 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 43 H 0.39 5.67 9.10 45.56 0.41 6.09 16 LS Contribution 356.32 15.07 5.37 5.37 Total: -1.00 -32.34 356.32 -6.77 -39.10 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -4.89 Total: 13.14 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: -2.05 Total: 3.37 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: 0.64 Total: -36.53 kcal Atomic # 8 Polarization: -38.17 SS G_CDS: -1.44 Total: -39.61 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -4.39 Total: 15.16 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.34 -6.77 -39.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700372769.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.857 kcal (2) G-P(sol) polarization free energy of solvation -32.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds