Wall clock time and date at job start Fri Apr 10 2020 18:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46912 * 2 1 4 4 H 1.08997 * 109.47216 * 305.27845 * 3 2 1 5 5 C 1.50698 * 109.47187 * 185.28364 * 3 2 1 6 6 H 1.07997 * 120.00327 * 245.75057 * 5 3 2 7 7 C 1.37880 * 120.00244 * 65.74890 * 5 3 2 8 8 N 1.31511 * 120.00096 * 192.34880 * 7 5 3 9 9 Si 1.86803 * 119.99917 * 12.34296 * 7 5 3 10 10 H 1.48498 * 109.46947 * 89.46625 * 9 7 5 11 11 H 1.48493 * 109.46978 * 209.47060 * 9 7 5 12 12 H 1.48508 * 109.47000 * 329.47086 * 9 7 5 13 13 C 1.52995 * 109.47261 * 65.28529 * 3 2 1 14 14 H 1.08992 * 109.47366 * 54.44934 * 13 3 2 15 15 N 1.46500 * 109.47031 * 294.44666 * 13 3 2 16 16 C 1.34776 * 120.00199 * 152.87878 * 15 13 3 17 17 O 1.21504 * 120.00121 * 0.02562 * 16 15 13 18 18 O 1.34634 * 120.00005 * 180.02562 * 16 15 13 19 19 C 1.45205 * 117.00283 * 180.02562 * 18 16 15 20 20 C 1.50697 * 109.47647 * 180.02562 * 19 18 16 21 21 C 1.38236 * 119.99883 * 269.72542 * 20 19 18 22 22 C 1.38230 * 119.99592 * 179.76307 * 21 20 19 23 23 C 1.38231 * 120.00178 * 0.50929 * 22 21 20 24 24 C 1.38231 * 120.00205 * 359.74523 * 23 22 21 25 25 C 1.38233 * 119.99732 * 89.99465 * 20 19 18 26 26 C 1.50703 * 109.47257 * 174.45236 * 13 3 2 27 27 O 1.20823 * 120.00366 * 119.99542 * 26 13 3 28 28 O 1.34231 * 119.99632 * 299.71871 * 26 13 3 29 29 H 1.09005 * 109.47083 * 50.97878 * 1 2 3 30 30 H 1.09000 * 109.46673 * 170.97063 * 1 2 3 31 31 H 1.08990 * 109.47627 * 290.97059 * 1 2 3 32 32 H 1.08997 * 109.47297 * 240.00273 * 2 1 3 33 33 H 1.08996 * 109.46855 * 119.99599 * 2 1 3 34 34 H 0.97001 * 119.99750 * 179.97438 * 8 7 5 35 35 H 0.97003 * 120.00249 * 332.88118 * 15 13 3 36 36 H 1.09004 * 109.46510 * 300.00498 * 19 18 16 37 37 H 1.09002 * 109.47202 * 59.99476 * 19 18 16 38 38 H 1.08000 * 119.99867 * 0.02562 * 21 20 19 39 39 H 1.08002 * 119.99566 * 180.23062 * 22 21 20 40 40 H 1.08007 * 120.00055 * 179.72753 * 23 22 21 41 41 H 1.08003 * 120.00321 * 179.97438 * 24 23 22 42 42 H 1.07998 * 120.00690 * 0.02562 * 25 20 19 43 43 H 0.96699 * 116.99752 * 180.27630 * 28 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6015 1.9829 -0.8389 5 6 3.5412 1.4446 -0.1308 6 1 4.1537 1.8031 0.6832 7 6 4.1329 0.9888 -1.2898 8 7 5.4277 0.7605 -1.3213 9 14 3.0954 0.6953 -2.8152 10 1 3.0328 1.9425 -3.6187 11 1 3.7056 -0.3872 -3.6281 12 1 1.7228 0.2973 -2.4113 13 6 1.6413 2.1244 1.3103 14 1 1.9964 1.5299 2.1520 15 7 0.1824 2.2412 1.3759 16 6 -0.4373 2.2819 2.5720 17 8 0.2140 2.2223 3.5961 18 8 -1.7780 2.3887 2.6323 19 6 -2.3776 2.4276 3.9542 20 6 -3.8741 2.5475 3.8238 21 6 -4.4660 3.7959 3.7778 22 6 -5.8383 3.9058 3.6533 23 6 -6.6196 2.7675 3.5854 24 6 -6.0282 1.5192 3.6368 25 6 -4.6553 1.4091 3.7559 26 6 2.2583 3.4981 1.3698 27 8 1.5519 4.4743 1.4578 28 8 3.5928 3.6366 1.3304 29 1 -0.3633 0.6471 -0.7984 30 1 -0.3633 -1.0150 -0.1613 31 1 -0.3634 0.3677 0.9595 32 1 1.8933 -0.5138 -0.8900 33 1 1.8932 -0.5138 0.8900 34 1 5.8438 0.4394 -2.1366 35 1 -0.3376 2.2891 0.5584 36 1 -2.1322 1.5114 4.4914 37 1 -1.9904 3.2856 4.5037 38 1 -3.8559 4.6852 3.8348 39 1 -6.3004 4.8812 3.6135 40 1 -7.6922 2.8535 3.4926 41 1 -6.6386 0.6298 3.5842 42 1 -4.1934 0.4338 3.7967 43 1 3.9422 4.5371 1.3755 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700372769.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:03 Heat of formation + Delta-G solvation = -156.199828 kcal Electronic energy + Delta-G solvation = -27360.146661 eV Core-core repulsion = 23370.164462 eV Total energy + Delta-G solvation = -3989.982199 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.07329 -41.03583 -40.06874 -38.50878 -37.30804 -36.98490 -35.01772 -33.64513 -33.02211 -31.83832 -31.11207 -28.15259 -27.13936 -24.59700 -23.53339 -23.52368 -22.34462 -22.01360 -21.74395 -19.93010 -19.23099 -18.70464 -18.18108 -18.03136 -17.41553 -17.29750 -16.62865 -16.28268 -16.13599 -16.04232 -15.89454 -14.97532 -14.74577 -14.69013 -14.42483 -14.30450 -14.02962 -13.91790 -13.78127 -13.38957 -13.33196 -13.03097 -12.69500 -12.47891 -12.20840 -12.14187 -12.07810 -12.05950 -11.87497 -11.72224 -11.70083 -11.57895 -11.23909 -10.98975 -10.56596 -10.16554 -9.85975 -9.85433 -8.17649 -6.18873 0.11281 0.46696 1.09132 1.26526 1.41122 1.47233 1.52778 1.59665 2.35335 2.46478 2.80796 3.15413 3.23080 3.70961 3.80171 3.85844 4.09393 4.17463 4.22849 4.26032 4.28546 4.31726 4.49058 4.53081 4.59667 4.64237 4.70196 4.87089 4.99624 5.03067 5.12139 5.20077 5.23824 5.26139 5.44419 5.51669 5.57727 5.57738 5.59211 5.67118 5.74847 6.04730 6.22489 6.39829 6.94330 7.12715 7.19174 7.43301 8.96996 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.019737 B = 0.003182 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.339182 B = 8797.472288 C = 9554.752392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.120 4.120 3 C 0.024 3.976 4 H 0.041 0.959 5 C -0.514 4.514 6 H 0.075 0.925 7 C 0.027 3.973 8 N -0.938 5.938 9 Si 0.908 3.092 10 H -0.284 1.284 11 H -0.295 1.295 12 H -0.212 1.212 13 C 0.194 3.806 14 H 0.117 0.883 15 N -0.674 5.674 16 C 0.655 3.345 17 O -0.602 6.602 18 O -0.360 6.360 19 C 0.125 3.875 20 C -0.114 4.114 21 C -0.108 4.108 22 C -0.130 4.130 23 C -0.110 4.110 24 C -0.128 4.128 25 C -0.104 4.104 26 C 0.482 3.518 27 O -0.556 6.556 28 O -0.483 6.483 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.263 0.737 35 H 0.422 0.578 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.126 0.874 39 H 0.145 0.855 40 H 0.150 0.850 41 H 0.148 0.852 42 H 0.133 0.867 43 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.361 1.926 7.385 24.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.158 4.158 3 C 0.004 3.996 4 H 0.059 0.941 5 C -0.552 4.552 6 H 0.093 0.907 7 C -0.171 4.171 8 N -0.578 5.578 9 Si 0.733 3.267 10 H -0.211 1.211 11 H -0.222 1.222 12 H -0.135 1.135 13 C 0.088 3.912 14 H 0.135 0.865 15 N -0.335 5.335 16 C 0.409 3.591 17 O -0.493 6.493 18 O -0.274 6.274 19 C 0.051 3.949 20 C -0.114 4.114 21 C -0.127 4.127 22 C -0.147 4.147 23 C -0.128 4.128 24 C -0.146 4.146 25 C -0.122 4.122 26 C 0.325 3.675 27 O -0.448 6.448 28 O -0.292 6.292 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.261 0.739 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.144 0.856 39 H 0.163 0.837 40 H 0.168 0.832 41 H 0.166 0.834 42 H 0.151 0.849 43 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -23.308 1.700 7.844 24.651 hybrid contribution 0.658 0.714 -1.017 1.406 sum -22.650 2.414 6.827 23.780 Atomic orbital electron populations 1.22183 0.95294 1.02164 1.02131 1.21905 0.95587 0.96615 1.01693 1.19305 0.96295 0.93856 0.90105 0.94105 1.21223 0.89786 1.41485 1.02737 0.90747 1.25597 0.95514 0.94583 1.01369 1.70062 1.12389 1.46752 1.28606 0.86514 0.82583 0.77575 0.80050 1.21099 1.22177 1.13462 1.20507 0.76993 0.89860 1.03884 0.86534 1.44682 1.06232 1.75776 1.06775 1.18103 0.81356 0.75427 0.84262 1.90964 1.66619 1.57130 1.34620 1.86315 1.18981 1.86238 1.35889 1.21889 0.89275 1.03676 0.80048 1.19540 0.92341 0.94878 1.04679 1.21313 0.96118 0.96807 0.98421 1.21465 0.93111 1.00240 0.99929 1.21628 1.01399 0.92235 0.97566 1.21496 0.94334 0.99017 0.99752 1.21331 0.94662 0.98157 0.98031 1.24050 0.81027 0.92565 0.69833 1.90608 1.63634 1.42085 1.48475 1.84950 1.22540 1.38127 1.83609 0.92243 0.92083 0.91905 0.92522 0.92622 0.92841 0.73919 0.89702 0.90654 0.85593 0.83713 0.83243 0.83421 0.84887 0.73121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.55 8.44 71.98 0.61 -3.94 16 2 C -0.12 -4.37 4.67 30.59 0.14 -4.23 16 3 C 0.02 0.97 1.15 -11.54 -0.01 0.96 16 4 H 0.04 1.62 6.85 -2.39 -0.02 1.61 16 5 C -0.51 -25.99 7.81 25.60 0.20 -25.79 16 6 H 0.07 4.16 5.93 -2.91 -0.02 4.14 16 7 C 0.03 1.46 5.37 84.66 0.45 1.92 16 8 N -0.94 -55.06 13.96 21.45 0.30 -54.76 16 9 Si 0.91 39.71 25.80 68.60 1.77 41.48 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 11 H -0.30 -13.23 7.11 99.48 0.71 -12.52 16 12 H -0.21 -7.98 5.33 99.48 0.53 -7.45 16 13 C 0.19 7.44 2.08 44.24 0.09 7.54 16 14 H 0.12 4.73 7.51 -2.39 -0.02 4.71 16 15 N -0.67 -22.43 2.27 -573.75 -1.30 -23.73 16 16 C 0.65 22.60 8.09 129.79 1.05 23.65 16 17 O -0.60 -24.17 15.76 19.83 0.31 -23.86 16 18 O -0.36 -10.57 10.25 -55.43 -0.57 -11.14 16 19 C 0.12 3.06 5.60 71.23 0.40 3.45 16 20 C -0.11 -2.37 5.52 -19.87 -0.11 -2.48 16 21 C -0.11 -2.04 9.70 22.27 0.22 -1.82 16 22 C -0.13 -1.91 10.05 22.27 0.22 -1.68 16 23 C -0.11 -1.42 10.05 22.27 0.22 -1.19 16 24 C -0.13 -1.78 10.05 22.27 0.22 -1.56 16 25 C -0.10 -1.83 9.70 22.27 0.22 -1.61 16 26 C 0.48 19.70 7.58 71.24 0.54 20.24 16 27 O -0.56 -23.91 17.14 21.97 0.38 -23.54 16 28 O -0.48 -18.99 10.34 -51.43 -0.53 -19.53 16 29 H 0.06 1.54 7.75 -2.38 -0.02 1.52 16 30 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.06 1.75 5.29 -2.39 -0.01 1.74 16 32 H 0.06 2.17 4.75 -2.39 -0.01 2.16 16 33 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 35 H 0.42 12.20 7.19 -92.71 -0.67 11.53 16 36 H 0.08 1.96 8.08 -2.38 -0.02 1.94 16 37 H 0.08 1.87 8.08 -2.39 -0.02 1.85 16 38 H 0.13 2.23 8.06 -2.91 -0.02 2.21 16 39 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 40 H 0.15 1.07 8.06 -2.91 -0.02 1.05 16 41 H 0.15 1.30 8.06 -2.91 -0.02 1.28 16 42 H 0.13 2.03 8.06 -2.91 -0.02 2.01 16 43 H 0.41 11.97 9.10 -74.06 -0.67 11.30 16 Total: -1.00 -69.94 356.32 4.37 -65.57 By element: Atomic # 1 Polarization: 36.52 SS G_CDS: -0.46 Total: 36.06 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: 4.47 Total: 13.44 kcal Atomic # 7 Polarization: -77.49 SS G_CDS: -1.00 Total: -78.49 kcal Atomic # 8 Polarization: -77.65 SS G_CDS: -0.41 Total: -78.06 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 1.77 Total: 41.48 kcal Total: -69.94 4.37 -65.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700372769.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.626 kcal (2) G-P(sol) polarization free energy of solvation -69.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds