Wall clock time and date at job start Fri Apr 10 2020 18:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34231 * 117.00286 * 2 1 4 4 O 1.20835 * 119.99744 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00375 * 180.02562 * 3 2 1 6 6 H 1.08998 * 109.54406 * 54.89380 * 5 3 2 7 7 C 1.53103 * 109.50654 * 294.78675 * 5 3 2 8 8 N 1.47009 * 109.25633 * 183.21631 * 7 5 3 9 9 C 1.46906 * 110.99665 * 182.39004 * 8 7 5 10 10 C 1.50701 * 109.47181 * 302.40940 * 9 8 7 11 11 C 1.38305 * 119.92884 * 270.27442 * 10 9 8 12 12 C 1.38104 * 120.06265 * 180.23644 * 11 10 9 13 13 C 1.38874 * 119.93268 * 359.46835 * 12 11 10 14 14 O 1.35748 * 120.06924 * 180.25860 * 13 12 11 15 15 C 1.34830 * 117.00158 * 354.46435 * 14 13 12 16 16 H 1.08005 * 119.99657 * 5.05386 * 15 14 13 17 17 C 1.38652 * 120.00222 * 185.06116 * 15 14 13 18 18 N 1.31559 * 120.00088 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 120.00175 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.47306 * 89.99870 * 19 17 15 21 21 H 1.48500 * 109.47366 * 210.00597 * 19 17 15 22 22 H 1.48501 * 109.46766 * 330.00399 * 19 17 15 23 23 C 1.38882 * 119.86301 * 0.27782 * 13 12 11 24 24 C 1.38102 * 119.92770 * 359.97438 * 23 13 12 25 25 C 1.47015 * 110.75645 * 58.61683 * 8 7 5 26 26 C 1.53103 * 109.25337 * 301.38498 * 25 8 7 27 27 O 1.43004 * 109.25982 * 56.84896 * 26 25 8 28 28 H 1.08994 * 109.47616 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47188 * 299.99732 * 1 2 3 30 30 H 1.09002 * 109.47502 * 59.99286 * 1 2 3 31 31 H 1.08997 * 109.50952 * 63.27710 * 7 5 3 32 32 H 1.09005 * 109.50467 * 303.15028 * 7 5 3 33 33 H 1.09002 * 109.47095 * 182.40922 * 9 8 7 34 34 H 1.09000 * 109.46974 * 62.41060 * 9 8 7 35 35 H 1.07999 * 119.96556 * 0.02562 * 11 10 9 36 36 H 1.08000 * 120.03234 * 179.74884 * 12 11 10 37 37 H 0.96996 * 120.00113 * 179.97438 * 18 17 15 38 38 H 1.07996 * 120.03759 * 180.02562 * 23 13 12 39 39 H 1.08006 * 119.96319 * 179.97438 * 24 23 13 40 40 H 1.08999 * 109.51044 * 61.31412 * 25 8 7 41 41 H 1.08997 * 109.50672 * 181.44835 * 25 8 7 42 42 H 1.08996 * 109.50196 * 176.78766 * 26 25 8 43 43 H 1.09007 * 109.50140 * 296.90812 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9610 0.7042 -0.8412 7 6 4.1090 0.6972 1.3093 8 7 5.5712 0.8470 1.3362 9 6 6.1389 0.2530 2.5540 10 6 5.5166 0.8988 3.7651 11 6 6.0932 2.0278 4.3180 12 6 5.5280 2.6191 5.4307 13 6 4.3734 2.0853 5.9879 14 8 3.8125 2.6673 7.0785 15 6 4.4868 3.6903 7.6412 16 1 5.3864 4.0651 7.1757 17 6 4.0253 4.2612 8.8175 18 7 4.6829 5.2598 9.3662 19 14 2.4690 3.6135 9.6223 20 1 2.8190 2.5310 10.5768 21 1 1.7926 4.7165 10.3511 22 1 1.5582 3.0779 8.5788 23 6 3.7938 0.9545 5.4272 24 6 4.3667 0.3649 4.3176 25 6 5.9524 2.2615 1.2130 26 6 5.3911 2.8235 -0.0959 27 8 3.9729 2.6410 -0.1178 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 3.8501 -0.3595 1.3760 32 1 3.6726 1.2334 2.1520 33 1 7.2166 0.4153 2.5691 34 1 5.9325 -0.8172 2.5665 35 1 6.9882 2.4455 3.8811 36 1 5.9810 3.4983 5.8645 37 1 4.3599 5.6594 10.1889 38 1 2.8956 0.5373 5.8579 39 1 3.9167 -0.5147 3.8813 40 1 5.5454 2.8228 2.0541 41 1 7.0390 2.3467 1.2094 42 1 5.6225 3.8864 -0.1644 43 1 5.8389 2.2978 -0.9393 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731213143.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:16 Heat of formation + Delta-G solvation = -111.980633 kcal Electronic energy + Delta-G solvation = -27447.938247 eV Core-core repulsion = 23459.873536 eV Total energy + Delta-G solvation = -3988.064711 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.93123 -39.84214 -38.99024 -37.32727 -36.53865 -35.26913 -32.46303 -32.03249 -30.48740 -30.35517 -28.35802 -27.36751 -25.61166 -24.82372 -24.00452 -22.07124 -21.60712 -20.78608 -20.13905 -18.05987 -17.90879 -17.36069 -17.30186 -16.71208 -16.19205 -15.86977 -15.30277 -15.25815 -14.82563 -14.74233 -14.43893 -14.08305 -13.91643 -13.76616 -13.41297 -13.23944 -13.16681 -12.74825 -12.55499 -12.32512 -12.27158 -12.01418 -11.62252 -11.49194 -11.37939 -11.24732 -11.02120 -10.94645 -10.76568 -10.74493 -10.37954 -10.21953 -9.92276 -9.46583 -8.92982 -8.48753 -8.35598 -7.42337 -6.48013 -4.14924 1.95517 2.01962 2.06658 2.14073 3.17973 3.21421 3.36105 3.62539 3.92140 4.18426 4.38766 4.50580 4.56940 4.76209 4.77217 4.86496 4.88680 4.97688 5.02725 5.04031 5.13446 5.27533 5.30325 5.34840 5.37393 5.53428 5.61834 5.64873 5.72812 5.86443 5.93464 6.03282 6.10189 6.20913 6.45929 6.65411 6.73681 6.78830 6.83748 6.94841 7.14400 7.20295 7.51734 7.56159 7.72059 7.96362 8.86827 9.47937 10.59376 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.013632 B = 0.003492 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.513154 B = 8017.145574 C = 8934.319498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.355 6.355 3 C 0.468 3.532 4 O -0.482 6.482 5 C 0.107 3.893 6 H 0.103 0.897 7 C 0.026 3.974 8 N -0.525 5.525 9 C 0.109 3.891 10 C -0.221 4.221 11 C -0.060 4.060 12 C -0.221 4.221 13 C 0.163 3.837 14 O -0.215 6.215 15 C -0.391 4.391 16 H 0.107 0.893 17 C 0.065 3.935 18 N -0.877 5.877 19 Si 0.905 3.095 20 H -0.273 1.273 21 H -0.281 1.281 22 H -0.260 1.260 23 C -0.194 4.194 24 C -0.065 4.065 25 C 0.006 3.994 26 C 0.068 3.932 27 O -0.361 6.361 28 H 0.104 0.896 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.096 0.904 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.108 0.892 36 H 0.133 0.867 37 H 0.280 0.720 38 H 0.116 0.884 39 H 0.111 0.889 40 H 0.060 0.940 41 H 0.089 0.911 42 H 0.105 0.895 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.448 -11.645 -19.108 22.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.272 6.272 3 C 0.308 3.692 4 O -0.367 6.367 5 C 0.048 3.952 6 H 0.121 0.879 7 C -0.103 4.103 8 N -0.248 5.248 9 C -0.018 4.018 10 C -0.223 4.223 11 C -0.079 4.079 12 C -0.241 4.241 13 C 0.111 3.889 14 O -0.119 6.119 15 C -0.467 4.467 16 H 0.124 0.876 17 C -0.139 4.139 18 N -0.514 5.514 19 Si 0.731 3.269 20 H -0.198 1.198 21 H -0.207 1.207 22 H -0.184 1.184 23 C -0.213 4.213 24 C -0.084 4.084 25 C -0.122 4.122 26 C -0.009 4.009 27 O -0.280 6.280 28 H 0.122 0.878 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.114 0.886 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.126 0.874 36 H 0.151 0.849 37 H 0.091 0.909 38 H 0.134 0.866 39 H 0.129 0.871 40 H 0.079 0.921 41 H 0.107 0.893 42 H 0.123 0.877 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.819 -11.304 -19.226 22.318 hybrid contribution -0.843 0.338 1.304 1.589 sum -1.661 -10.965 -17.922 21.076 Atomic orbital electron populations 1.23313 0.75720 1.03873 1.02839 1.86457 1.23769 1.32668 1.84355 1.23139 0.91045 0.81777 0.73242 1.90710 1.66570 1.36265 1.43130 1.21369 0.87410 0.86027 1.00412 0.87916 1.22676 0.89537 1.02381 0.95691 1.62737 1.08778 1.15772 1.37527 1.20985 0.98481 0.98122 0.84175 1.19956 1.00056 1.00644 1.01676 1.20663 0.98075 0.94486 0.94660 1.21278 0.99174 1.04064 0.99553 1.19145 0.91199 0.91102 0.87491 1.83573 1.45781 1.45085 1.37490 1.20772 1.09945 1.08558 1.07385 0.87600 1.24473 0.98844 0.95275 0.95304 1.69641 1.39250 1.22586 1.19933 0.86182 0.82411 0.78629 0.79706 1.19799 1.20656 1.18387 1.20216 1.03357 0.97643 1.00070 1.20516 0.94895 0.98306 0.94690 1.22913 1.01523 0.89301 0.98503 1.22795 0.79539 1.01817 0.96748 1.88062 1.23133 1.22433 1.94350 0.87782 0.91573 0.91817 0.88566 0.91725 0.90183 0.90198 0.87399 0.84940 0.90942 0.86559 0.87054 0.92130 0.89298 0.87661 0.92015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.56 101.05 1.07 1.37 16 2 O -0.36 -3.89 10.56 -39.26 -0.41 -4.30 16 3 C 0.47 6.25 7.29 36.01 0.26 6.51 16 4 O -0.48 -8.13 16.26 -25.46 -0.41 -8.54 16 5 C 0.11 1.29 3.33 -27.83 -0.09 1.19 16 6 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 7 C 0.03 0.31 4.11 -3.71 -0.02 0.29 16 8 N -0.52 -5.94 4.94 -235.74 -1.16 -7.11 16 9 C 0.11 1.27 5.58 -4.97 -0.03 1.24 16 10 C -0.22 -3.35 4.03 -104.58 -0.42 -3.77 16 11 C -0.06 -1.02 8.00 -39.61 -0.32 -1.34 16 12 C -0.22 -4.66 9.17 -39.40 -0.36 -5.02 16 13 C 0.16 3.73 6.65 -39.11 -0.26 3.47 16 14 O -0.21 -5.66 8.59 0.06 0.00 -5.66 16 15 C -0.39 -10.99 9.95 30.89 0.31 -10.68 16 16 H 0.11 3.03 5.44 -52.48 -0.29 2.74 16 17 C 0.06 1.81 5.49 -17.52 -0.10 1.72 16 18 N -0.88 -25.21 13.96 55.48 0.77 -24.44 16 19 Si 0.91 21.65 28.62 -169.99 -4.86 16.79 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.26 -6.27 7.11 56.52 0.40 -5.87 16 23 C -0.19 -3.76 9.99 -39.39 -0.39 -4.16 16 24 C -0.07 -1.05 7.91 -39.61 -0.31 -1.36 16 25 C 0.01 0.07 5.11 -3.71 -0.02 0.05 16 26 C 0.07 0.70 7.01 37.21 0.26 0.97 16 27 O -0.36 -4.99 10.01 -55.10 -0.55 -5.54 16 28 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16 30 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 31 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.06 0.97 6.22 -51.93 -0.32 0.65 16 33 H 0.08 0.85 8.05 -51.93 -0.42 0.43 16 34 H 0.08 0.84 8.08 -51.93 -0.42 0.42 16 35 H 0.11 1.57 8.02 -52.49 -0.42 1.15 16 36 H 0.13 2.96 5.64 -52.49 -0.30 2.66 16 37 H 0.28 7.44 8.31 -40.82 -0.34 7.10 16 38 H 0.12 2.13 8.06 -52.49 -0.42 1.71 16 39 H 0.11 1.47 8.02 -52.48 -0.42 1.05 16 40 H 0.06 0.85 6.32 -51.93 -0.33 0.53 16 41 H 0.09 0.84 8.12 -51.93 -0.42 0.41 16 42 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 355.66 15.07 5.36 5.36 Total: -1.00 -32.34 355.66 -7.54 -39.88 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -5.85 Total: 3.09 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: -0.42 Total: -9.53 kcal Atomic # 7 Polarization: -31.15 SS G_CDS: -0.39 Total: -31.54 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -1.38 Total: -24.05 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.86 Total: 16.79 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.34 -7.54 -39.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731213143.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.097 kcal (2) G-P(sol) polarization free energy of solvation -32.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds