Wall clock time and date at job start Fri Apr 10 2020 18:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86799 * 120.00008 * 2 1 4 4 H 1.48501 * 109.47182 * 239.99781 * 3 2 1 5 5 H 1.48505 * 109.47357 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47039 * 119.99679 * 3 2 1 7 7 C 1.38650 * 119.99962 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00333 * 180.02562 * 7 2 1 9 9 O 1.34833 * 120.00178 * 0.27731 * 7 2 1 10 10 C 1.35746 * 117.00531 * 174.66237 * 9 7 2 11 11 C 1.38870 * 120.07171 * 185.25575 * 10 9 7 12 12 C 1.38107 * 119.92949 * 179.74696 * 11 10 9 13 13 C 1.38302 * 120.06984 * 0.53903 * 12 11 10 14 14 C 1.50692 * 119.93252 * 179.76584 * 13 12 11 15 15 C 1.50701 * 109.47262 * 269.97584 * 14 13 12 16 16 O 1.21283 * 119.99729 * 359.97438 * 15 14 13 17 17 N 1.34772 * 120.00333 * 180.02562 * 15 14 13 18 18 C 1.46503 * 120.00135 * 179.97438 * 17 15 14 19 19 C 1.52998 * 109.47133 * 180.02562 * 18 17 15 20 20 H 1.09001 * 109.52511 * 60.12893 * 19 18 17 21 21 C 1.53143 * 109.52239 * 180.32979 * 19 18 17 22 22 O 1.43074 * 109.14901 * 175.21306 * 21 19 18 23 23 C 1.43075 * 113.59250 * 302.04445 * 22 21 19 24 24 C 1.53131 * 109.15253 * 57.95477 * 23 22 21 25 25 O 1.43075 * 109.52316 * 299.99933 * 19 18 17 26 26 C 1.38303 * 120.13384 * 359.73683 * 13 12 11 27 27 C 1.38093 * 120.07308 * 359.97438 * 26 13 12 28 28 H 0.97006 * 119.99546 * 0.02562 * 1 2 3 29 29 H 1.08004 * 120.03617 * 0.03027 * 11 10 9 30 30 H 1.07998 * 119.96549 * 180.27491 * 12 11 10 31 31 H 1.09004 * 109.47567 * 29.97114 * 14 13 12 32 32 H 1.09000 * 109.47707 * 149.97562 * 14 13 12 33 33 H 0.97003 * 120.00257 * 359.97438 * 17 15 14 34 34 H 1.08995 * 109.46975 * 300.00124 * 18 17 15 35 35 H 1.09005 * 109.46791 * 59.99919 * 18 17 15 36 36 H 1.09002 * 109.52252 * 295.11172 * 21 19 18 37 37 H 1.08996 * 109.52730 * 55.30880 * 21 19 18 38 38 H 1.08999 * 109.52336 * 298.04931 * 23 22 21 39 39 H 1.09004 * 109.57626 * 177.88913 * 23 22 21 40 40 H 1.08994 * 109.52830 * 184.78734 * 24 23 22 41 41 H 1.09006 * 109.58176 * 64.61926 * 24 23 22 42 42 H 1.08001 * 119.95922 * 180.02562 * 26 13 12 43 43 H 1.07999 * 120.03887 * 180.02562 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2846 2.7465 -0.0006 6 1 3.1032 1.6964 1.2126 7 6 2.0088 -1.2007 0.0005 8 1 3.0887 -1.2008 0.0010 9 8 1.3347 -2.3684 -0.0046 10 6 2.0698 -3.5041 -0.1163 11 6 1.4364 -4.7339 -0.2381 12 6 2.1873 -5.8870 -0.3568 13 6 3.5685 -5.8189 -0.3432 14 6 4.3847 -7.0795 -0.4676 15 6 4.6505 -7.6434 0.9045 16 8 4.2200 -7.0769 1.8867 17 7 5.3676 -8.7764 1.0401 18 6 5.6264 -9.3242 2.3740 19 6 6.4561 -10.6035 2.2478 20 1 7.4043 -10.3762 1.7607 21 6 6.7204 -11.1816 3.6411 22 8 7.3991 -12.4341 3.5084 23 6 6.6801 -13.3955 2.7301 24 6 6.4158 -12.8174 1.3369 25 8 5.7371 -11.5649 1.4694 26 6 4.2022 -4.5962 -0.2163 27 6 3.4571 -3.4390 -0.1032 28 1 -0.4850 0.8401 -0.0004 29 1 0.3578 -4.7882 -0.2446 30 1 1.6953 -6.8432 -0.4560 31 1 3.8357 -7.8109 -1.0607 32 1 5.3320 -6.8524 -0.9568 33 1 5.7123 -9.2293 0.2546 34 1 6.1753 -8.5927 2.9670 35 1 4.6793 -9.5517 2.8634 36 1 7.3406 -10.4897 4.2109 37 1 5.7730 -11.3336 4.1582 38 1 5.7314 -13.6219 3.2166 39 1 7.2702 -14.3076 2.6401 40 1 5.7956 -13.5093 0.7671 41 1 7.3627 -12.6656 0.8187 42 1 5.2811 -4.5463 -0.2064 43 1 3.9525 -2.4845 -0.0045 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732059761.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:24 Heat of formation + Delta-G solvation = -128.011835 kcal Electronic energy + Delta-G solvation = -25792.176026 eV Core-core repulsion = 21803.416150 eV Total energy + Delta-G solvation = -3988.759876 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.56508 -39.62889 -38.70718 -36.73155 -36.40352 -34.94263 -32.51946 -32.21040 -31.17886 -30.08328 -29.10513 -27.07684 -25.82704 -24.95536 -23.52009 -21.90547 -21.67198 -21.03845 -19.97920 -17.91822 -17.50631 -17.40033 -16.95440 -16.71539 -16.66863 -16.08189 -15.60787 -15.32917 -14.97265 -14.51715 -14.42836 -14.16974 -13.96043 -13.62486 -13.45928 -13.33132 -13.20344 -12.82986 -12.63373 -12.37768 -12.33617 -11.94819 -11.76374 -11.44578 -11.21209 -11.20320 -10.91719 -10.77877 -10.69301 -10.58770 -10.39042 -9.82656 -9.58871 -9.27001 -9.14171 -8.76575 -8.08129 -7.09735 -6.39357 -3.97899 2.31481 2.32643 2.80924 2.98997 3.11555 3.16761 3.18006 3.20499 3.30076 4.01575 4.08292 4.30047 4.43167 4.48371 4.56226 4.61925 4.71587 4.93918 5.02396 5.04731 5.14666 5.16933 5.22982 5.30898 5.33523 5.39194 5.41056 5.58406 5.73444 5.79634 5.92106 6.28261 6.30568 6.42449 6.48681 6.49914 6.77224 6.98396 7.11551 7.30480 7.43726 7.48346 7.52124 7.90951 8.06004 8.35698 9.06255 9.77576 10.78772 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.035883 B = 0.001917 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.131072 B =14602.942791 C =14889.914851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.391 4.391 8 H 0.091 0.909 9 O -0.179 6.179 10 C 0.156 3.844 11 C -0.192 4.192 12 C -0.059 4.059 13 C -0.170 4.170 14 C -0.079 4.079 15 C 0.509 3.491 16 O -0.522 6.522 17 N -0.735 5.735 18 C 0.130 3.870 19 C 0.043 3.957 20 H 0.076 0.924 21 C 0.032 3.968 22 O -0.377 6.377 23 C 0.021 3.979 24 C 0.025 3.975 25 O -0.371 6.371 26 C -0.057 4.057 27 C -0.233 4.233 28 H 0.270 0.730 29 H 0.116 0.884 30 H 0.108 0.892 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.401 0.599 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.110 0.890 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.062 0.938 42 H 0.103 0.897 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.322 -25.140 1.376 29.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.467 4.467 8 H 0.108 0.892 9 O -0.082 6.082 10 C 0.103 3.897 11 C -0.211 4.211 12 C -0.078 4.078 13 C -0.171 4.171 14 C -0.119 4.119 15 C 0.296 3.704 16 O -0.396 6.396 17 N -0.389 5.389 18 C 0.006 3.994 19 C -0.015 4.015 20 H 0.094 0.906 21 C -0.045 4.045 22 O -0.296 6.296 23 C -0.056 4.056 24 C -0.052 4.052 25 O -0.290 6.290 26 C -0.075 4.075 27 C -0.252 4.252 28 H 0.080 0.920 29 H 0.134 0.866 30 H 0.126 0.874 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.236 0.764 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.128 0.872 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.123 0.877 40 H 0.125 0.875 41 H 0.080 0.920 42 H 0.122 0.878 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 14.551 -24.479 2.138 28.558 hybrid contribution 0.723 0.449 -0.327 0.911 sum 15.274 -24.031 1.811 28.532 Atomic orbital electron populations 1.70035 1.05934 1.27671 1.46252 1.25282 0.95843 0.98796 0.96651 0.85787 0.78681 0.79835 0.79143 1.19547 1.20317 1.19529 1.21275 0.91766 0.80880 1.52788 0.89157 1.83976 1.34329 1.11476 1.78428 1.19388 0.90294 0.88035 0.92007 1.20154 0.99476 0.90361 1.11107 1.20406 0.92785 0.96601 0.97988 1.18636 0.93223 0.92569 1.12652 1.20391 1.01247 0.96803 0.93432 1.21074 0.77203 0.79590 0.92514 1.90748 1.49389 1.59006 1.40435 1.45921 1.57215 1.27252 1.08545 1.21207 1.00165 0.91749 0.86256 1.23045 0.96104 0.89356 0.92981 0.90584 1.23183 0.99085 0.86307 0.95934 1.88117 1.45946 1.23164 1.72364 1.23284 0.98040 0.92543 0.91692 1.23263 0.98590 0.86352 0.97020 1.88159 1.45797 1.22943 1.72146 1.20503 0.98024 0.91839 0.97154 1.21099 0.93803 0.98810 1.11476 0.92042 0.86560 0.87380 0.88928 0.89031 0.76441 0.89796 0.90656 0.87207 0.91479 0.91917 0.87661 0.87531 0.92003 0.87845 0.85611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.86 13.67 55.48 0.76 -25.10 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 20.97 29.55 -169.99 -5.02 15.94 16 4 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.39 -11.23 9.49 30.88 0.29 -10.94 16 8 H 0.09 2.40 5.20 -52.49 -0.27 2.13 16 9 O -0.18 -5.28 9.76 0.05 0.00 -5.28 16 10 C 0.16 3.97 6.65 -39.11 -0.26 3.71 16 11 C -0.19 -4.29 9.99 -39.40 -0.39 -4.69 16 12 C -0.06 -1.13 9.69 -39.61 -0.38 -1.52 16 13 C -0.17 -3.03 4.38 -104.58 -0.46 -3.49 16 14 C -0.08 -1.01 5.83 -29.04 -0.17 -1.18 16 15 C 0.51 7.14 7.82 -10.99 -0.09 7.06 16 16 O -0.52 -9.91 16.03 5.55 0.09 -9.83 16 17 N -0.73 -7.41 5.45 -60.29 -0.33 -7.74 16 18 C 0.13 1.19 5.37 -4.04 -0.02 1.17 16 19 C 0.04 0.31 2.93 -26.66 -0.08 0.23 16 20 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 21 C 0.03 0.22 6.34 37.23 0.24 0.45 16 22 O -0.38 -2.97 10.85 -48.80 -0.53 -3.50 16 23 C 0.02 0.12 7.05 37.23 0.26 0.38 16 24 C 0.02 0.13 7.05 37.23 0.26 0.40 16 25 O -0.37 -2.97 10.24 -48.80 -0.50 -3.47 16 26 C -0.06 -1.10 9.69 -39.61 -0.38 -1.49 16 27 C -0.23 -5.32 9.17 -39.39 -0.36 -5.68 16 28 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.12 2.50 8.06 -52.48 -0.42 2.08 16 30 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 31 H 0.09 0.97 8.08 -51.93 -0.42 0.55 16 32 H 0.09 0.94 8.08 -51.93 -0.42 0.52 16 33 H 0.40 3.05 8.35 -40.82 -0.34 2.70 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.10 1.71 8.06 -52.49 -0.42 1.28 16 43 H 0.13 2.86 5.64 -52.49 -0.30 2.56 16 LS Contribution 364.93 15.07 5.50 5.50 Total: -1.00 -36.05 364.93 -7.63 -43.68 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -5.96 Total: 4.40 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: -1.64 Total: -14.60 kcal Atomic # 7 Polarization: -33.27 SS G_CDS: 0.43 Total: -32.84 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: -0.94 Total: -22.08 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.05 -7.63 -43.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732059761.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.335 kcal (2) G-P(sol) polarization free energy of solvation -36.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds