Wall clock time and date at job start Fri Apr 10 2020 18:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86799 * 120.00008 * 2 1 4 4 H 1.48501 * 109.47182 * 239.99781 * 3 2 1 5 5 H 1.48505 * 109.47357 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47039 * 119.99679 * 3 2 1 7 7 C 1.38650 * 119.99962 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00333 * 180.02562 * 7 2 1 9 9 O 1.34833 * 120.00178 * 0.27731 * 7 2 1 10 10 C 1.35746 * 117.00531 * 174.66237 * 9 7 2 11 11 C 1.38870 * 120.07171 * 185.25575 * 10 9 7 12 12 C 1.38107 * 119.92949 * 179.74696 * 11 10 9 13 13 C 1.38302 * 120.06984 * 0.53903 * 12 11 10 14 14 C 1.50692 * 119.93252 * 179.76584 * 13 12 11 15 15 C 1.50701 * 109.47262 * 269.97584 * 14 13 12 16 16 O 1.21283 * 119.99729 * 359.97438 * 15 14 13 17 17 N 1.34772 * 120.00333 * 180.02562 * 15 14 13 18 18 C 1.46503 * 120.00135 * 179.97438 * 17 15 14 19 19 C 1.52998 * 109.47133 * 180.02562 * 18 17 15 20 20 H 1.09001 * 109.52511 * 60.12893 * 19 18 17 21 21 C 1.53143 * 109.52239 * 180.32979 * 19 18 17 22 22 O 1.43074 * 109.14901 * 175.21306 * 21 19 18 23 23 C 1.43075 * 113.59250 * 302.04445 * 22 21 19 24 24 C 1.53131 * 109.15253 * 57.95477 * 23 22 21 25 25 O 1.43075 * 109.52316 * 299.99933 * 19 18 17 26 26 C 1.38303 * 120.13384 * 359.73683 * 13 12 11 27 27 C 1.38093 * 120.07308 * 359.97438 * 26 13 12 28 28 H 0.97006 * 119.99546 * 0.02562 * 1 2 3 29 29 H 1.08004 * 120.03617 * 0.03027 * 11 10 9 30 30 H 1.07998 * 119.96549 * 180.27491 * 12 11 10 31 31 H 1.09004 * 109.47567 * 29.97114 * 14 13 12 32 32 H 1.09000 * 109.47707 * 149.97562 * 14 13 12 33 33 H 0.97003 * 120.00257 * 359.97438 * 17 15 14 34 34 H 1.08995 * 109.46975 * 300.00124 * 18 17 15 35 35 H 1.09005 * 109.46791 * 59.99919 * 18 17 15 36 36 H 1.09002 * 109.52252 * 295.11172 * 21 19 18 37 37 H 1.08996 * 109.52730 * 55.30880 * 21 19 18 38 38 H 1.08999 * 109.52336 * 298.04931 * 23 22 21 39 39 H 1.09004 * 109.57626 * 177.88913 * 23 22 21 40 40 H 1.08994 * 109.52830 * 184.78734 * 24 23 22 41 41 H 1.09006 * 109.58176 * 64.61926 * 24 23 22 42 42 H 1.08001 * 119.95922 * 180.02562 * 26 13 12 43 43 H 1.07999 * 120.03887 * 180.02562 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2846 2.7465 -0.0006 6 1 3.1032 1.6964 1.2126 7 6 2.0088 -1.2007 0.0005 8 1 3.0887 -1.2008 0.0010 9 8 1.3347 -2.3684 -0.0046 10 6 2.0698 -3.5041 -0.1163 11 6 1.4364 -4.7339 -0.2381 12 6 2.1873 -5.8870 -0.3568 13 6 3.5685 -5.8189 -0.3432 14 6 4.3847 -7.0795 -0.4676 15 6 4.6505 -7.6434 0.9045 16 8 4.2200 -7.0769 1.8867 17 7 5.3676 -8.7764 1.0401 18 6 5.6264 -9.3242 2.3740 19 6 6.4561 -10.6035 2.2478 20 1 7.4043 -10.3762 1.7607 21 6 6.7204 -11.1816 3.6411 22 8 7.3991 -12.4341 3.5084 23 6 6.6801 -13.3955 2.7301 24 6 6.4158 -12.8174 1.3369 25 8 5.7371 -11.5649 1.4694 26 6 4.2022 -4.5962 -0.2163 27 6 3.4571 -3.4390 -0.1032 28 1 -0.4850 0.8401 -0.0004 29 1 0.3578 -4.7882 -0.2446 30 1 1.6953 -6.8432 -0.4560 31 1 3.8357 -7.8109 -1.0607 32 1 5.3320 -6.8524 -0.9568 33 1 5.7123 -9.2293 0.2546 34 1 6.1753 -8.5927 2.9670 35 1 4.6793 -9.5517 2.8634 36 1 7.3406 -10.4897 4.2109 37 1 5.7730 -11.3336 4.1582 38 1 5.7314 -13.6219 3.2166 39 1 7.2702 -14.3076 2.6401 40 1 5.7956 -13.5093 0.7671 41 1 7.3627 -12.6656 0.8187 42 1 5.2811 -4.5463 -0.2064 43 1 3.9525 -2.4845 -0.0045 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000732059761.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:23 Heat of formation + Delta-G solvation = -155.027926 kcal Electronic energy + Delta-G solvation = -25793.347532 eV Core-core repulsion = 21803.416150 eV Total energy + Delta-G solvation = -3989.931382 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.24849 -40.86068 -40.23378 -38.22738 -37.21108 -35.81560 -34.39000 -33.23557 -32.40256 -31.76126 -29.72444 -28.33988 -27.26064 -26.28832 -24.15227 -23.62260 -22.48446 -22.21852 -21.16851 -19.83265 -18.85927 -18.19805 -18.02334 -17.42724 -17.39986 -16.81501 -16.58155 -16.35823 -16.15923 -15.90299 -15.84776 -15.56057 -15.40018 -15.01236 -14.56500 -14.46452 -14.38202 -14.19187 -13.84220 -13.57613 -13.36977 -12.94826 -12.83610 -12.73220 -12.44567 -12.41013 -12.28180 -12.24712 -12.12585 -11.72753 -11.38459 -11.16973 -10.94134 -10.74004 -10.19330 -10.07654 -9.75043 -8.88772 -8.46285 -6.14623 0.62787 0.68668 1.34375 1.45642 1.51245 1.74808 2.18593 2.19287 2.56760 2.75534 2.86786 3.19176 3.53020 3.59923 3.73253 3.88730 3.92205 4.03523 4.07090 4.15682 4.19088 4.24787 4.33121 4.42657 4.51557 4.58527 4.60816 4.63747 4.73663 4.76737 4.81950 4.88513 4.90689 5.10564 5.15632 5.32055 5.45080 5.57888 5.72763 5.79564 5.95943 6.00400 6.03698 6.24487 6.63131 6.97945 7.36503 7.79591 8.76957 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.035883 B = 0.001917 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.131072 B =14602.942791 C =14889.914851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.025 4.025 3 Si 1.021 2.979 4 H -0.255 1.255 5 H -0.271 1.271 6 H -0.259 1.259 7 C -0.415 4.415 8 H 0.101 0.899 9 O -0.234 6.234 10 C 0.111 3.889 11 C -0.207 4.207 12 C -0.059 4.059 13 C -0.145 4.145 14 C -0.077 4.077 15 C 0.511 3.489 16 O -0.581 6.581 17 N -0.714 5.714 18 C 0.129 3.871 19 C 0.054 3.946 20 H 0.089 0.911 21 C 0.030 3.970 22 O -0.395 6.395 23 C 0.016 3.984 24 C 0.023 3.977 25 O -0.390 6.390 26 C -0.060 4.060 27 C -0.244 4.244 28 H 0.273 0.727 29 H 0.111 0.889 30 H 0.145 0.855 31 H 0.129 0.871 32 H 0.130 0.870 33 H 0.418 0.582 34 H 0.085 0.915 35 H 0.059 0.941 36 H 0.122 0.878 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.125 0.875 40 H 0.123 0.877 41 H 0.070 0.930 42 H 0.140 0.860 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.555 -27.728 0.370 33.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.222 4.222 3 Si 0.839 3.161 4 H -0.180 1.180 5 H -0.195 1.195 6 H -0.183 1.183 7 C -0.491 4.491 8 H 0.118 0.882 9 O -0.141 6.141 10 C 0.061 3.939 11 C -0.227 4.227 12 C -0.077 4.077 13 C -0.146 4.146 14 C -0.116 4.116 15 C 0.299 3.701 16 O -0.460 6.460 17 N -0.368 5.368 18 C 0.005 3.995 19 C -0.004 4.004 20 H 0.107 0.893 21 C -0.047 4.047 22 O -0.314 6.314 23 C -0.061 4.061 24 C -0.054 4.054 25 O -0.310 6.310 26 C -0.078 4.078 27 C -0.263 4.263 28 H 0.081 0.919 29 H 0.129 0.871 30 H 0.163 0.837 31 H 0.147 0.853 32 H 0.148 0.852 33 H 0.255 0.745 34 H 0.103 0.897 35 H 0.077 0.923 36 H 0.140 0.860 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.143 0.857 40 H 0.141 0.859 41 H 0.088 0.912 42 H 0.158 0.842 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 17.844 -27.175 1.099 32.528 hybrid contribution -0.149 0.804 -0.030 0.818 sum 17.695 -26.371 1.070 31.776 Atomic orbital electron populations 1.70190 1.08039 1.28830 1.48931 1.26633 0.96912 1.02803 0.95875 0.84630 0.77375 0.74139 0.79925 1.17962 1.19497 1.18322 1.21789 0.92507 0.81496 1.53293 0.88218 1.83936 1.35971 1.12642 1.81555 1.19943 0.91698 0.87961 0.94274 1.20436 0.99865 0.90794 1.11572 1.20877 0.93611 0.96739 0.96436 1.19264 0.93319 0.94405 1.07648 1.20516 1.02716 0.94812 0.93587 1.21171 0.76872 0.80028 0.92050 1.90755 1.52113 1.60941 1.42211 1.45727 1.55479 1.25895 1.09710 1.21241 0.99788 0.92852 0.85608 1.22914 0.95821 0.88342 0.93336 0.89348 1.23235 0.99169 0.86417 0.95889 1.88095 1.46687 1.23686 1.72911 1.23466 0.98215 0.92833 0.91540 1.23436 0.99218 0.85576 0.97123 1.88118 1.46714 1.23934 1.72215 1.20944 0.99776 0.91137 0.95930 1.21235 0.93086 1.00114 1.11904 0.91851 0.87071 0.83712 0.85348 0.85206 0.74525 0.89662 0.92304 0.86045 0.91955 0.92196 0.85721 0.85864 0.91155 0.84226 0.86409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.29 13.67 21.61 0.30 -58.00 16 2 C -0.03 -1.47 5.49 84.83 0.47 -1.01 16 3 Si 1.02 44.18 29.55 68.60 2.03 46.20 16 4 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 5 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 6 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 7 C -0.41 -25.19 9.49 67.92 0.64 -24.54 16 8 H 0.10 5.56 5.20 -2.91 -0.02 5.55 16 9 O -0.23 -14.84 9.76 -22.72 -0.22 -15.06 16 10 C 0.11 5.93 6.65 22.58 0.15 6.08 16 11 C -0.21 -9.54 9.99 22.39 0.22 -9.32 16 12 C -0.06 -2.12 9.69 22.25 0.22 -1.91 16 13 C -0.15 -4.72 4.38 -19.84 -0.09 -4.81 16 14 C -0.08 -1.57 5.83 29.10 0.17 -1.40 16 15 C 0.51 12.48 7.82 87.66 0.69 13.17 16 16 O -0.58 -21.04 16.03 -3.04 -0.05 -21.08 16 17 N -0.71 -11.78 5.45 -463.06 -2.52 -14.30 16 18 C 0.13 2.08 5.37 86.38 0.46 2.55 16 19 C 0.05 0.63 2.93 30.64 0.09 0.72 16 20 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 21 C 0.03 0.35 6.34 72.03 0.46 0.81 16 22 O -0.39 -5.44 10.85 -136.00 -1.48 -6.92 16 23 C 0.02 0.14 7.05 72.03 0.51 0.65 16 24 C 0.02 0.18 7.05 72.03 0.51 0.69 16 25 O -0.39 -5.13 10.24 -136.00 -1.39 -6.53 16 26 C -0.06 -2.19 9.69 22.25 0.22 -1.98 16 27 C -0.24 -11.37 9.17 22.39 0.21 -11.16 16 28 H 0.27 15.77 8.31 -92.70 -0.77 15.00 16 29 H 0.11 5.06 8.06 -2.91 -0.02 5.03 16 30 H 0.15 4.14 8.06 -2.91 -0.02 4.12 16 31 H 0.13 1.83 8.08 -2.39 -0.02 1.81 16 32 H 0.13 1.79 8.08 -2.39 -0.02 1.77 16 33 H 0.42 4.35 8.35 -92.71 -0.77 3.57 16 34 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 36 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.12 0.55 8.14 -2.38 -0.02 0.53 16 40 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.07 0.45 8.14 -2.38 -0.02 0.43 16 42 H 0.14 4.07 8.06 -2.91 -0.02 4.05 16 43 H 0.12 5.53 5.64 -2.91 -0.02 5.52 16 Total: -1.00 -85.38 364.93 1.84 -83.55 By element: Atomic # 1 Polarization: 23.34 SS G_CDS: 0.26 Total: 23.60 kcal Atomic # 6 Polarization: -36.38 SS G_CDS: 4.92 Total: -31.46 kcal Atomic # 7 Polarization: -70.07 SS G_CDS: -2.23 Total: -72.30 kcal Atomic # 8 Polarization: -46.45 SS G_CDS: -3.14 Total: -49.59 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Total: -85.38 1.84 -83.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732059761.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.482 kcal (2) G-P(sol) polarization free energy of solvation -85.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds