Wall clock time and date at job start Fri Apr 10 2020 18:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99879 * 2 1 4 4 H 1.48506 * 109.46896 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47118 * 300.00189 * 3 2 1 6 6 H 1.48500 * 109.47162 * 60.00161 * 3 2 1 7 7 C 1.37880 * 119.99874 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99713 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00100 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47099 * 180.02562 * 9 7 2 11 11 C 1.34781 * 119.99874 * 180.02562 * 10 9 7 12 12 O 1.21279 * 119.99746 * 359.97438 * 11 10 9 13 13 C 1.50699 * 119.99958 * 179.97438 * 11 10 9 14 14 O 1.45194 * 109.47064 * 180.02562 * 13 11 10 15 15 C 1.34233 * 116.99969 * 180.02562 * 14 13 11 16 16 O 1.20829 * 119.99885 * 359.97438 * 15 14 13 17 17 C 1.50699 * 120.00100 * 180.02562 * 15 14 13 18 18 H 1.09002 * 109.46959 * 304.99647 * 17 15 14 19 19 O 1.42898 * 109.46964 * 184.99677 * 17 15 14 20 20 C 1.52997 * 109.47078 * 64.99559 * 17 15 14 21 21 C 1.53004 * 109.47236 * 184.99974 * 20 17 15 22 22 C 1.50703 * 109.47376 * 180.02562 * 21 20 17 23 23 C 1.38236 * 119.99966 * 269.72791 * 22 21 20 24 24 C 1.38236 * 119.99860 * 179.76431 * 23 22 21 25 25 C 1.38239 * 119.99738 * 0.50794 * 24 23 22 26 26 C 1.38233 * 119.99849 * 359.74675 * 25 24 23 27 27 C 1.38228 * 120.00651 * 359.97438 * 26 25 24 28 28 H 0.97002 * 119.99910 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.47103 * 59.99709 * 9 7 2 30 30 H 1.09001 * 109.46869 * 300.00104 * 9 7 2 31 31 H 0.96994 * 120.00145 * 0.02562 * 10 9 7 32 32 H 1.09004 * 109.47371 * 59.99758 * 13 11 10 33 33 H 1.09001 * 109.46972 * 300.00200 * 13 11 10 34 34 H 0.96698 * 113.99898 * 299.99550 * 19 17 15 35 35 H 1.09001 * 109.47630 * 305.00104 * 20 17 15 36 36 H 1.09004 * 109.47346 * 65.00234 * 20 17 15 37 37 H 1.09001 * 109.46917 * 300.00567 * 21 20 17 38 38 H 1.09004 * 109.46741 * 59.99889 * 21 20 17 39 39 H 1.07999 * 119.99759 * 359.97438 * 23 22 21 40 40 H 1.07995 * 120.00102 * 180.23092 * 24 23 22 41 41 H 1.07997 * 119.99593 * 179.72526 * 25 24 23 42 42 H 1.08005 * 119.99534 * 179.97438 * 26 25 24 43 43 H 1.07998 * 120.00402 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7537 -4.8834 -0.0011 12 8 0.5613 -5.1049 -0.0011 13 6 2.7330 -6.0288 -0.0016 14 8 2.0070 -7.2862 -0.0027 15 6 2.7381 -8.4120 -0.0028 16 8 3.9447 -8.3488 -0.0025 17 6 2.0539 -9.7548 -0.0045 18 1 1.3629 -9.8115 0.8366 19 8 3.0334 -10.7886 0.1130 20 6 1.2804 -9.9314 -1.3128 21 6 0.4859 -11.2380 -1.2631 22 6 -0.2755 -11.4123 -2.5519 23 6 -1.5589 -10.9124 -2.6695 24 6 -2.2555 -11.0680 -3.8534 25 6 -1.6725 -11.7327 -4.9161 26 6 -0.3910 -12.2372 -4.7966 27 6 0.3077 -12.0766 -3.6148 28 1 -0.4850 0.8401 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8897 31 1 3.1567 -3.4355 -0.0002 32 1 3.3598 -5.9715 0.8883 33 1 3.3596 -5.9707 -0.8916 34 1 3.6828 -10.7983 -0.6034 35 1 0.5951 -9.0942 -1.4456 36 1 1.9808 -9.9635 -2.1474 37 1 1.1712 -12.0751 -1.1302 38 1 -0.2144 -11.2058 -0.4284 39 1 -2.0161 -10.3973 -1.8376 40 1 -3.2567 -10.6742 -3.9466 41 1 -2.2183 -11.8582 -5.8394 42 1 0.0643 -12.7569 -5.6267 43 1 1.3087 -12.4710 -3.5213 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000741005119.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:31 Heat of formation + Delta-G solvation = -163.588762 kcal Electronic energy + Delta-G solvation = -25486.273022 eV Core-core repulsion = 21495.970415 eV Total energy + Delta-G solvation = -3990.302607 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.90619 -39.58629 -38.88572 -37.64614 -36.29928 -34.30603 -34.24084 -32.44802 -31.13838 -30.98485 -29.30861 -27.41242 -26.36633 -23.48471 -22.83065 -22.61934 -21.29863 -21.11582 -19.99828 -18.45480 -17.73656 -17.04188 -17.00399 -16.78914 -16.02277 -15.97762 -15.58394 -15.29385 -15.14636 -14.96823 -14.55154 -14.29323 -13.70412 -13.54940 -13.42350 -13.29366 -13.07033 -12.99853 -12.62948 -12.39399 -12.05946 -12.00038 -11.81753 -11.53470 -11.44040 -11.11699 -11.07090 -11.01562 -10.97352 -10.78940 -10.37657 -10.32186 -9.45580 -9.23169 -9.17229 -8.95019 -8.81939 -8.03200 -6.22682 -4.30113 1.07909 1.15034 1.90858 2.26077 3.12143 3.20324 3.27619 3.30550 3.50443 3.78364 3.89174 4.22430 4.29964 4.47553 4.57230 4.67386 4.72396 4.78399 4.89965 4.96561 5.03666 5.11716 5.13370 5.16937 5.26204 5.28505 5.32736 5.37449 5.61149 5.73893 5.81181 5.86689 6.18754 6.21080 6.27302 6.36910 6.75374 7.00730 7.18523 7.26028 7.41975 7.49453 7.59023 7.88577 8.45461 8.67380 8.91812 9.36422 10.87473 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014278 B = 0.002183 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.538159 B =12825.146255 C =14292.337370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.545 4.545 8 H 0.065 0.935 9 C 0.251 3.749 10 N -0.706 5.706 11 C 0.500 3.500 12 O -0.534 6.534 13 C 0.047 3.953 14 O -0.325 6.325 15 C 0.431 3.569 16 O -0.505 6.505 17 C 0.124 3.876 18 H 0.142 0.858 19 O -0.531 6.531 20 C -0.143 4.143 21 C -0.075 4.075 22 C -0.083 4.083 23 C -0.114 4.114 24 C -0.118 4.118 25 C -0.126 4.126 26 C -0.121 4.121 27 C -0.118 4.118 28 H 0.266 0.734 29 H 0.030 0.970 30 H 0.030 0.970 31 H 0.393 0.607 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.385 0.615 35 H 0.094 0.906 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.125 0.875 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.120 0.880 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.016 -25.297 -5.942 26.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.583 4.583 8 H 0.083 0.917 9 C 0.131 3.869 10 N -0.356 5.356 11 C 0.282 3.718 12 O -0.411 6.411 13 C -0.031 4.031 14 O -0.239 6.239 15 C 0.273 3.727 16 O -0.393 6.393 17 C 0.063 3.937 18 H 0.159 0.841 19 O -0.337 6.337 20 C -0.181 4.181 21 C -0.112 4.112 22 C -0.083 4.083 23 C -0.132 4.132 24 C -0.136 4.136 25 C -0.144 4.144 26 C -0.139 4.139 27 C -0.136 4.136 28 H 0.076 0.924 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.226 0.774 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.234 0.766 35 H 0.113 0.887 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.143 0.857 40 H 0.140 0.860 41 H 0.138 0.862 42 H 0.138 0.862 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.999 -25.383 -5.405 25.972 hybrid contribution 1.371 1.392 -0.570 2.035 sum 2.370 -23.991 -5.976 24.838 Atomic orbital electron populations 1.69984 1.06118 1.27332 1.48727 1.24960 0.94944 0.99526 0.94594 0.86332 0.79811 0.82802 0.77801 1.19605 1.20743 1.20749 1.21241 0.93368 0.90275 1.53452 0.91710 1.19188 0.88159 0.81537 0.98049 1.46374 1.11546 1.05356 1.72359 1.19865 0.89098 0.83974 0.78820 1.90709 1.16265 1.84540 1.49585 1.22905 0.94485 0.81051 1.04610 1.86568 1.40433 1.13993 1.82945 1.24917 0.87231 0.87916 0.72666 1.90685 1.15519 1.87797 1.45300 1.21556 0.89663 0.80840 1.01625 0.84087 1.86649 1.43838 1.49684 1.53512 1.22264 1.00181 0.99907 0.95733 1.20536 0.98478 0.97431 0.94767 1.19878 0.94647 0.98039 0.95744 1.21153 0.94388 0.99541 0.98141 1.21198 1.00107 0.98860 0.93387 1.21169 0.95644 0.98718 0.98845 1.21143 0.94985 1.00081 0.97667 1.21057 0.99843 0.99556 0.93143 0.92402 0.95225 0.95231 0.77415 0.88442 0.88522 0.76586 0.88702 0.90671 0.90001 0.90296 0.85737 0.85985 0.86236 0.86207 0.86140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.64 13.29 55.43 0.74 -24.90 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.91 20.54 29.54 -169.99 -5.02 15.52 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.55 -14.47 9.28 -34.44 -0.32 -14.79 16 8 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 9 C 0.25 6.48 5.43 -5.20 -0.03 6.46 16 10 N -0.71 -14.37 5.55 -61.47 -0.34 -14.71 16 11 C 0.50 9.79 7.91 -10.98 -0.09 9.70 16 12 O -0.53 -12.72 16.50 -14.10 -0.23 -12.95 16 13 C 0.05 0.69 5.94 36.01 0.21 0.91 16 14 O -0.32 -4.81 9.72 -45.91 -0.45 -5.26 16 15 C 0.43 5.40 7.27 36.01 0.26 5.67 16 16 O -0.50 -7.30 16.07 -25.47 -0.41 -7.71 16 17 C 0.12 1.12 3.49 -27.88 -0.10 1.02 16 18 H 0.14 1.11 8.14 -51.93 -0.42 0.69 16 19 O -0.53 -4.65 12.53 -55.14 -0.69 -5.34 16 20 C -0.14 -1.14 4.85 -26.73 -0.13 -1.27 16 21 C -0.07 -0.53 5.24 -27.88 -0.15 -0.68 16 22 C -0.08 -0.70 5.13 -104.62 -0.54 -1.24 16 23 C -0.11 -1.01 9.70 -39.58 -0.38 -1.40 16 24 C -0.12 -1.01 10.05 -39.58 -0.40 -1.40 16 25 C -0.13 -1.02 10.05 -39.58 -0.40 -1.41 16 26 C -0.12 -0.95 10.05 -39.59 -0.40 -1.35 16 27 C -0.12 -0.95 9.70 -39.58 -0.38 -1.33 16 28 H 0.27 7.21 8.31 -40.82 -0.34 6.88 16 29 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.39 6.72 8.32 -40.82 -0.34 6.38 16 32 H 0.10 1.27 8.13 -51.93 -0.42 0.84 16 33 H 0.10 1.24 8.13 -51.93 -0.42 0.82 16 34 H 0.38 2.43 8.79 45.56 0.40 2.83 16 35 H 0.09 0.90 8.12 -51.93 -0.42 0.47 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.53 7.77 -51.93 -0.40 0.12 16 38 H 0.08 0.52 8.08 -51.93 -0.42 0.10 16 39 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 41 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 42 H 0.12 0.71 8.06 -52.48 -0.42 0.28 16 43 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 LS Contribution 380.19 15.07 5.73 5.73 Total: -1.00 -34.38 380.19 -8.97 -43.35 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -5.37 Total: 5.76 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -2.93 Total: 0.52 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: 0.40 Total: -39.61 kcal Atomic # 8 Polarization: -29.49 SS G_CDS: -1.78 Total: -31.27 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.38 -8.97 -43.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741005119.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.236 kcal (2) G-P(sol) polarization free energy of solvation -34.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds