Wall clock time and date at job start Fri Apr 10 2020 18:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99879 * 2 1 4 4 H 1.48506 * 109.46896 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47118 * 300.00189 * 3 2 1 6 6 H 1.48500 * 109.47162 * 60.00161 * 3 2 1 7 7 C 1.37880 * 119.99874 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99713 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00100 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47099 * 180.02562 * 9 7 2 11 11 C 1.34781 * 119.99874 * 180.02562 * 10 9 7 12 12 O 1.21279 * 119.99746 * 359.97438 * 11 10 9 13 13 C 1.50699 * 119.99958 * 179.97438 * 11 10 9 14 14 O 1.45194 * 109.47064 * 180.02562 * 13 11 10 15 15 C 1.34233 * 116.99969 * 180.02562 * 14 13 11 16 16 O 1.20829 * 119.99885 * 359.97438 * 15 14 13 17 17 C 1.50699 * 120.00100 * 180.02562 * 15 14 13 18 18 H 1.09002 * 109.46959 * 304.99647 * 17 15 14 19 19 O 1.42898 * 109.46964 * 184.99677 * 17 15 14 20 20 C 1.52997 * 109.47078 * 64.99559 * 17 15 14 21 21 C 1.53004 * 109.47236 * 184.99974 * 20 17 15 22 22 C 1.50703 * 109.47376 * 180.02562 * 21 20 17 23 23 C 1.38236 * 119.99966 * 269.72791 * 22 21 20 24 24 C 1.38236 * 119.99860 * 179.76431 * 23 22 21 25 25 C 1.38239 * 119.99738 * 0.50794 * 24 23 22 26 26 C 1.38233 * 119.99849 * 359.74675 * 25 24 23 27 27 C 1.38228 * 120.00651 * 359.97438 * 26 25 24 28 28 H 0.97002 * 119.99910 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.47103 * 59.99709 * 9 7 2 30 30 H 1.09001 * 109.46869 * 300.00104 * 9 7 2 31 31 H 0.96994 * 120.00145 * 0.02562 * 10 9 7 32 32 H 1.09004 * 109.47371 * 59.99758 * 13 11 10 33 33 H 1.09001 * 109.46972 * 300.00200 * 13 11 10 34 34 H 0.96698 * 113.99898 * 299.99550 * 19 17 15 35 35 H 1.09001 * 109.47630 * 305.00104 * 20 17 15 36 36 H 1.09004 * 109.47346 * 65.00234 * 20 17 15 37 37 H 1.09001 * 109.46917 * 300.00567 * 21 20 17 38 38 H 1.09004 * 109.46741 * 59.99889 * 21 20 17 39 39 H 1.07999 * 119.99759 * 359.97438 * 23 22 21 40 40 H 1.07995 * 120.00102 * 180.23092 * 24 23 22 41 41 H 1.07997 * 119.99593 * 179.72526 * 25 24 23 42 42 H 1.08005 * 119.99534 * 179.97438 * 26 25 24 43 43 H 1.07998 * 120.00402 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7537 -4.8834 -0.0011 12 8 0.5613 -5.1049 -0.0011 13 6 2.7330 -6.0288 -0.0016 14 8 2.0070 -7.2862 -0.0027 15 6 2.7381 -8.4120 -0.0028 16 8 3.9447 -8.3488 -0.0025 17 6 2.0539 -9.7548 -0.0045 18 1 1.3629 -9.8115 0.8366 19 8 3.0334 -10.7886 0.1130 20 6 1.2804 -9.9314 -1.3128 21 6 0.4859 -11.2380 -1.2631 22 6 -0.2755 -11.4123 -2.5519 23 6 -1.5589 -10.9124 -2.6695 24 6 -2.2555 -11.0680 -3.8534 25 6 -1.6725 -11.7327 -4.9161 26 6 -0.3910 -12.2372 -4.7966 27 6 0.3077 -12.0766 -3.6148 28 1 -0.4850 0.8401 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8897 31 1 3.1567 -3.4355 -0.0002 32 1 3.3598 -5.9715 0.8883 33 1 3.3596 -5.9707 -0.8916 34 1 3.6828 -10.7983 -0.6034 35 1 0.5951 -9.0942 -1.4456 36 1 1.9808 -9.9635 -2.1474 37 1 1.1712 -12.0751 -1.1302 38 1 -0.2144 -11.2058 -0.4284 39 1 -2.0161 -10.3973 -1.8376 40 1 -3.2567 -10.6742 -3.9466 41 1 -2.2183 -11.8582 -5.8394 42 1 0.0643 -12.7569 -5.6267 43 1 1.3087 -12.4710 -3.5213 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000741005119.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:31 Heat of formation + Delta-G solvation = -186.079501 kcal Electronic energy + Delta-G solvation = -25487.248294 eV Core-core repulsion = 21495.970415 eV Total energy + Delta-G solvation = -3991.277879 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.95205 -40.51664 -40.13632 -38.53779 -37.35043 -36.19815 -34.87548 -34.42908 -31.76847 -31.72478 -30.70211 -28.79200 -27.56056 -24.74054 -24.03478 -23.42865 -22.21813 -21.75817 -21.66758 -19.53609 -19.10428 -18.32755 -17.89464 -17.62653 -17.43588 -17.09056 -16.71202 -16.65283 -16.16504 -16.07042 -15.67534 -15.62806 -14.78360 -14.54833 -14.27762 -14.20403 -14.11689 -13.96967 -13.89658 -13.67594 -13.62868 -13.08886 -12.92424 -12.81323 -12.76680 -12.23588 -12.13035 -12.06721 -11.95718 -11.84309 -11.64807 -11.48152 -11.19176 -10.90294 -10.84133 -9.94603 -9.78739 -9.56537 -8.30867 -6.47285 0.46215 0.53463 0.93279 1.17697 1.44090 1.44249 1.53425 1.57989 2.31798 2.52146 2.89337 3.04555 3.14069 3.49032 3.60815 3.72272 3.88264 4.00843 4.01984 4.07837 4.13633 4.21755 4.34268 4.37721 4.45980 4.68312 4.71996 4.77247 5.02218 5.04953 5.13336 5.17658 5.20718 5.22806 5.29434 5.40623 5.61299 5.61479 5.66759 5.76223 5.81078 6.16953 6.34234 6.58505 6.62085 6.76365 7.19161 7.34044 8.81424 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014278 B = 0.002183 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.538159 B =12825.146255 C =14292.337370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.985 3.015 4 H -0.253 1.253 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.556 4.556 8 H 0.086 0.914 9 C 0.266 3.734 10 N -0.699 5.699 11 C 0.499 3.501 12 O -0.582 6.582 13 C 0.058 3.942 14 O -0.343 6.343 15 C 0.433 3.567 16 O -0.523 6.523 17 C 0.135 3.865 18 H 0.155 0.845 19 O -0.534 6.534 20 C -0.134 4.134 21 C -0.068 4.068 22 C -0.093 4.093 23 C -0.134 4.134 24 C -0.133 4.133 25 C -0.137 4.137 26 C -0.129 4.129 27 C -0.126 4.126 28 H 0.269 0.731 29 H -0.007 1.007 30 H -0.007 1.007 31 H 0.412 0.588 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.396 0.604 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.126 0.874 40 H 0.130 0.870 41 H 0.135 0.865 42 H 0.139 0.861 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.366 -26.012 -6.202 27.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.196 4.196 3 Si 0.808 3.192 4 H -0.177 1.177 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.594 4.594 8 H 0.104 0.896 9 C 0.144 3.856 10 N -0.351 5.351 11 C 0.285 3.715 12 O -0.462 6.462 13 C -0.019 4.019 14 O -0.258 6.258 15 C 0.277 3.723 16 O -0.412 6.412 17 C 0.074 3.926 18 H 0.172 0.828 19 O -0.341 6.341 20 C -0.172 4.172 21 C -0.105 4.105 22 C -0.093 4.093 23 C -0.152 4.152 24 C -0.151 4.151 25 C -0.155 4.155 26 C -0.147 4.147 27 C -0.144 4.144 28 H 0.078 0.922 29 H 0.011 0.989 30 H 0.011 0.989 31 H 0.248 0.752 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.247 0.753 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.111 0.889 38 H 0.102 0.898 39 H 0.144 0.856 40 H 0.148 0.852 41 H 0.153 0.847 42 H 0.157 0.843 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.409 -26.133 -5.671 26.958 hybrid contribution 0.611 1.516 -0.513 1.714 sum 4.021 -24.617 -6.184 25.698 Atomic orbital electron populations 1.70137 1.08218 1.28568 1.49897 1.26052 0.95787 1.03869 0.93870 0.85108 0.79087 0.77352 0.77652 1.17658 1.20489 1.20522 1.21638 0.94417 0.90397 1.52925 0.89621 1.18633 0.88567 0.83790 0.94623 1.46053 1.11721 1.04782 1.72527 1.20675 0.89311 0.84683 0.76816 1.90687 1.18822 1.85282 1.51405 1.22752 0.92658 0.79430 1.07037 1.86578 1.41373 1.14483 1.83369 1.25638 0.87084 0.88043 0.71556 1.90673 1.16319 1.87931 1.46296 1.21632 0.89579 0.78873 1.02556 0.82829 1.86644 1.44150 1.49001 1.54318 1.22167 0.99855 0.99782 0.95391 1.20498 0.98506 0.97135 0.94373 1.20066 0.94623 0.98125 0.96486 1.21352 0.95071 1.00197 0.98546 1.21436 1.00758 0.99284 0.93660 1.21453 0.96108 0.98549 0.99356 1.21463 0.94979 0.99928 0.98325 1.21344 1.00689 0.99359 0.93035 0.92195 0.98914 0.98933 0.75155 0.85958 0.85877 0.75289 0.90390 0.90105 0.88860 0.89843 0.85575 0.85157 0.84687 0.84322 0.84395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.21 13.29 21.45 0.28 -54.92 16 2 C 0.00 0.22 5.46 84.65 0.46 0.68 16 3 Si 0.98 41.64 29.54 68.60 2.03 43.67 16 4 H -0.25 -9.88 7.11 99.48 0.71 -9.17 16 5 H -0.28 -11.63 7.11 99.48 0.71 -10.93 16 6 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.56 -29.52 9.28 25.60 0.24 -29.28 16 8 H 0.09 4.09 7.60 -2.91 -0.02 4.07 16 9 C 0.27 14.24 5.43 85.63 0.46 14.71 16 10 N -0.70 -28.47 5.55 -466.78 -2.59 -31.06 16 11 C 0.50 19.60 7.91 87.66 0.69 20.29 16 12 O -0.58 -28.63 16.50 15.77 0.26 -28.37 16 13 C 0.06 1.62 5.94 71.24 0.42 2.04 16 14 O -0.34 -9.78 9.72 -45.09 -0.44 -10.22 16 15 C 0.43 10.13 7.27 71.24 0.52 10.65 16 16 O -0.52 -14.00 16.07 28.37 0.46 -13.55 16 17 C 0.13 2.18 3.49 29.85 0.10 2.28 16 18 H 0.15 2.13 8.14 -2.39 -0.02 2.11 16 19 O -0.53 -8.08 12.53 -129.95 -1.63 -9.70 16 20 C -0.13 -1.97 4.85 30.59 0.15 -1.82 16 21 C -0.07 -0.87 5.24 29.85 0.16 -0.71 16 22 C -0.09 -1.49 5.13 -19.86 -0.10 -1.59 16 23 C -0.13 -2.38 9.70 22.27 0.22 -2.17 16 24 C -0.13 -2.29 10.05 22.27 0.22 -2.06 16 25 C -0.14 -2.12 10.05 22.27 0.22 -1.89 16 26 C -0.13 -1.87 10.05 22.27 0.22 -1.65 16 27 C -0.13 -1.85 9.70 22.27 0.22 -1.64 16 28 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 29 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 30 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 31 H 0.41 13.49 8.32 -92.71 -0.77 12.71 16 32 H 0.12 2.85 8.13 -2.38 -0.02 2.83 16 33 H 0.12 2.82 8.13 -2.39 -0.02 2.80 16 34 H 0.40 4.02 8.79 -74.06 -0.65 3.37 16 35 H 0.08 1.45 8.12 -2.39 -0.02 1.43 16 36 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.09 0.99 7.77 -2.39 -0.02 0.97 16 38 H 0.08 0.99 8.08 -2.39 -0.02 0.97 16 39 H 0.13 2.06 8.06 -2.91 -0.02 2.04 16 40 H 0.13 1.86 8.06 -2.91 -0.02 1.83 16 41 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 42 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 43 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 Total: -1.00 -75.83 380.19 2.20 -73.64 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: -0.39 Total: 22.67 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: 4.21 Total: 7.84 kcal Atomic # 7 Polarization: -83.68 SS G_CDS: -2.30 Total: -85.98 kcal Atomic # 8 Polarization: -60.49 SS G_CDS: -1.35 Total: -61.84 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Total: -75.83 2.20 -73.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741005119.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.441 kcal (2) G-P(sol) polarization free energy of solvation -75.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds