Wall clock time and date at job start Fri Apr 10 2020 18:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47223 * 2 1 4 4 C 1.52998 * 109.47503 * 239.99894 * 2 1 3 5 5 N 1.46501 * 109.47218 * 65.00037 * 4 2 1 6 6 S 1.65594 * 120.00065 * 165.00444 * 5 4 2 7 7 O 1.42104 * 104.27793 * 181.07274 * 6 5 4 8 8 O 1.42101 * 104.27751 * 308.92671 * 6 5 4 9 9 C 1.81397 * 104.45173 * 64.99674 * 6 5 4 10 10 C 1.53005 * 109.47062 * 180.02562 * 9 6 5 11 11 C 1.50700 * 109.46805 * 180.02562 * 10 9 6 12 12 H 1.08003 * 120.00234 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99769 * 179.97438 * 11 10 9 14 14 N 1.31512 * 120.00159 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99967 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47105 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47050 * 120.00381 * 15 13 11 18 18 H 1.48502 * 109.47041 * 239.99958 * 15 13 11 19 19 C 1.53006 * 109.46996 * 119.99503 * 2 1 3 20 20 C 1.53000 * 109.46978 * 294.10123 * 19 2 1 21 21 C 1.53008 * 109.62418 * 186.27081 * 20 19 2 22 22 O 1.43362 * 109.51038 * 306.58280 * 20 19 2 23 23 C 1.44200 * 107.28658 * 120.47851 * 22 20 19 24 24 C 1.54913 * 103.07297 * 21.43726 * 23 22 20 25 25 O 1.43754 * 109.63224 * 65.88110 * 20 19 2 26 26 H 1.09008 * 109.47041 * 69.08865 * 1 2 3 27 27 H 1.09002 * 109.47171 * 189.08828 * 1 2 3 28 28 H 1.09002 * 109.47184 * 309.09220 * 1 2 3 29 29 H 1.08999 * 109.46936 * 185.00209 * 4 2 1 30 30 H 1.09002 * 109.46708 * 305.00202 * 4 2 1 31 31 H 0.97007 * 119.99610 * 345.00048 * 5 4 2 32 32 H 1.09003 * 109.47373 * 300.00026 * 9 6 5 33 33 H 1.09000 * 109.46893 * 60.00070 * 9 6 5 34 34 H 1.08998 * 109.46976 * 299.99622 * 10 9 6 35 35 H 1.08996 * 109.46948 * 60.00155 * 10 9 6 36 36 H 0.97001 * 120.00479 * 179.97438 * 14 13 11 37 37 H 1.08991 * 109.47096 * 174.09813 * 19 2 1 38 38 H 1.08997 * 109.46417 * 54.10045 * 19 2 1 39 39 H 1.09008 * 109.46845 * 300.30613 * 21 20 19 40 40 H 1.08993 * 109.46993 * 180.31020 * 21 20 19 41 41 H 1.08998 * 109.46934 * 60.30384 * 21 20 19 42 42 H 1.08998 * 110.69221 * 263.04372 * 23 22 20 43 43 H 1.08993 * 110.84043 * 139.90272 * 23 22 20 44 44 H 1.09009 * 110.97719 * 206.32855 * 24 23 22 45 45 H 1.08993 * 110.98022 * 82.54979 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.6525 0.0353 -2.4424 6 16 2.3700 -0.2908 -3.8988 7 8 1.7752 0.6352 -4.7976 8 8 3.7628 -0.2499 -3.6202 9 6 1.8489 -1.9834 -4.2912 10 6 2.4551 -2.4060 -5.6310 11 6 2.0216 -3.8119 -5.9573 12 1 1.3784 -4.3504 -5.2769 13 6 2.4461 -4.4108 -7.1244 14 7 3.2289 -3.7550 -7.9531 15 14 1.9094 -6.1539 -7.5285 16 1 1.0377 -6.6679 -6.4417 17 1 1.1580 -6.1560 -8.8094 18 1 3.1064 -7.0235 -7.6555 19 6 2.0399 -0.7212 1.2494 20 6 1.6546 0.0807 2.4941 21 6 2.2946 -0.5520 3.7315 22 8 2.1114 1.4323 2.3533 23 6 0.9521 2.2865 2.4291 24 6 -0.0875 1.4021 3.1618 25 8 0.2245 0.0880 2.6403 26 1 -0.3633 0.3668 -0.9600 27 1 -0.3633 -1.0148 0.1623 28 1 -0.3633 0.6480 0.7976 29 1 3.1263 -0.7994 -1.2054 30 1 1.6054 -1.7198 -1.2951 31 1 0.9756 0.7273 -2.3792 32 1 2.1916 -2.6599 -3.5082 33 1 0.7615 -2.0231 -4.3553 34 1 2.1127 -1.7296 -6.4141 35 1 3.5424 -2.3664 -5.5664 36 1 3.5278 -4.1765 -8.7740 37 1 3.1247 -0.8136 1.1981 38 1 1.5929 -1.7137 1.3037 39 1 1.9465 -1.5797 3.8353 40 1 2.0140 0.0179 4.6172 41 1 3.3792 -0.5449 3.6233 42 1 0.6004 2.5479 1.4311 43 1 1.1694 3.1846 3.0071 44 1 -1.1039 1.6952 2.8984 45 1 0.0602 1.4389 4.2410 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000741252808.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:42 Heat of formation + Delta-G solvation = -207.981897 kcal Electronic energy + Delta-G solvation = -26022.899132 eV Core-core repulsion = 22166.115446 eV Total energy + Delta-G solvation = -3856.783687 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.71549 -38.26213 -37.87960 -36.99112 -35.92476 -35.88592 -34.44699 -33.11596 -32.40596 -29.36913 -27.69700 -27.57175 -26.67949 -24.07734 -23.59083 -22.26920 -21.17875 -20.27543 -19.08735 -18.57183 -18.20247 -17.51506 -17.18057 -17.03153 -16.64503 -16.51013 -16.13268 -15.65029 -15.40047 -15.07931 -14.63433 -14.49444 -14.36224 -14.20663 -13.81789 -13.74392 -13.67664 -13.26750 -13.20548 -13.14198 -13.07358 -13.02489 -12.94539 -12.76826 -12.69824 -12.25318 -12.23882 -12.10840 -11.98708 -11.83169 -11.70242 -11.63183 -11.14389 -10.89760 -10.65191 -10.46096 -10.27924 -8.25684 -6.39607 -0.65494 1.41418 1.42023 1.55447 1.88141 2.38494 2.53125 2.82541 3.02663 3.07909 3.28383 3.64955 3.73363 3.82325 3.97886 4.02002 4.08412 4.14039 4.16093 4.33299 4.38066 4.52092 4.57492 4.63193 4.68317 4.77508 4.78306 4.79975 4.86113 4.93522 5.01202 5.05055 5.08945 5.22306 5.26957 5.28811 5.29715 5.41523 5.56116 5.69276 6.06827 6.14481 6.22509 6.74579 7.30648 8.86929 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.021649 B = 0.002669 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.044884 B =10488.910610 C =11099.039905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.087 4.087 3 H 0.074 0.926 4 C 0.108 3.892 5 N -1.107 6.107 6 S 2.621 3.379 7 O -1.001 7.001 8 O -0.999 6.999 9 C -0.587 4.587 10 C 0.019 3.981 11 C -0.537 4.537 12 H 0.077 0.923 13 C -0.005 4.005 14 N -0.935 5.935 15 Si 0.975 3.025 16 H -0.255 1.255 17 H -0.279 1.279 18 H -0.278 1.278 19 C -0.122 4.122 20 C 0.253 3.747 21 C -0.169 4.169 22 O -0.395 6.395 23 C 0.012 3.988 24 C 0.012 3.988 25 O -0.376 6.376 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.422 0.578 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.006 0.994 35 H 0.007 0.993 36 H 0.267 0.733 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.114 0.886 44 H 0.126 0.874 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.325 8.869 27.366 29.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.107 4.107 3 H 0.093 0.907 4 C -0.017 4.017 5 N -0.869 5.869 6 S 2.718 3.282 7 O -0.991 6.991 8 O -0.989 6.989 9 C -0.719 4.719 10 C -0.020 4.020 11 C -0.576 4.576 12 H 0.095 0.905 13 C -0.204 4.204 14 N -0.575 5.575 15 Si 0.798 3.202 16 H -0.178 1.178 17 H -0.204 1.204 18 H -0.204 1.204 19 C -0.160 4.160 20 C 0.176 3.824 21 C -0.227 4.227 22 O -0.317 6.317 23 C -0.064 4.064 24 C -0.064 4.064 25 O -0.297 6.297 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.259 0.741 32 H 0.161 0.839 33 H 0.161 0.839 34 H 0.024 0.976 35 H 0.025 0.975 36 H 0.076 0.924 37 H 0.105 0.895 38 H 0.112 0.888 39 H 0.101 0.899 40 H 0.084 0.916 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.131 0.869 44 H 0.143 0.857 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.462 9.230 26.658 29.181 hybrid contribution -0.506 -0.750 -0.483 1.026 sum -7.969 8.480 26.175 28.645 Atomic orbital electron populations 1.22047 0.93621 1.03081 1.01854 1.21167 0.97294 0.99973 0.92244 0.90724 1.21619 1.00469 0.95564 0.84093 1.55284 1.57856 1.50628 1.23159 1.04396 0.73693 0.77322 0.72828 1.93497 1.78813 1.61733 1.65096 1.93495 1.33686 1.87530 1.84180 1.30327 1.12397 1.21450 1.07734 1.18834 0.95341 0.98048 0.89767 1.21561 1.30971 0.99123 1.05983 0.90530 1.26134 0.94891 1.03246 0.96084 1.70110 1.35580 1.39659 1.12160 0.85251 0.78276 0.78140 0.78496 1.17837 1.20430 1.20379 1.22031 1.02454 0.99635 0.91897 1.23409 0.79855 0.83858 0.95235 1.22356 1.01961 1.01924 0.96452 1.88900 1.31589 1.16663 1.94559 1.24384 0.85027 0.95141 1.01814 1.24518 1.01498 0.80979 0.99399 1.89304 1.21432 1.34134 1.84790 0.92952 0.92347 0.90682 0.90935 0.89767 0.74071 0.83888 0.83872 0.97589 0.97466 0.92407 0.89507 0.88774 0.89897 0.91562 0.90608 0.90505 0.86851 0.85651 0.89782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 8.21 71.98 0.59 -1.79 16 2 C -0.09 -1.55 2.35 -10.79 -0.03 -1.58 16 3 H 0.07 1.48 7.32 -2.39 -0.02 1.47 16 4 C 0.11 2.31 5.52 86.38 0.48 2.78 16 5 N -1.11 -27.68 5.71 -187.49 -1.07 -28.75 16 6 S 2.62 94.39 5.46 -56.49 -0.31 94.08 16 7 O -1.00 -42.46 18.08 -127.65 -2.31 -44.77 16 8 O -1.00 -42.57 17.50 -127.65 -2.23 -44.80 16 9 C -0.59 -22.10 6.01 71.98 0.43 -21.66 16 10 C 0.02 1.00 4.98 29.85 0.15 1.15 16 11 C -0.54 -29.87 9.11 25.60 0.23 -29.64 16 12 H 0.08 3.92 7.74 -2.91 -0.02 3.90 16 13 C -0.01 -0.30 5.46 84.66 0.46 0.16 16 14 N -0.94 -57.32 13.29 21.45 0.28 -57.04 16 15 Si 0.97 43.41 29.54 68.60 2.03 45.43 16 16 H -0.25 -10.54 7.11 99.48 0.71 -9.83 16 17 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 18 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 19 C -0.12 -1.95 4.31 30.60 0.13 -1.82 16 20 C 0.25 3.91 1.04 30.60 0.03 3.94 16 21 C -0.17 -2.16 9.20 71.98 0.66 -1.50 16 22 O -0.40 -6.86 9.82 -126.22 -1.24 -8.10 16 23 C 0.01 0.14 7.61 72.64 0.55 0.69 16 24 C 0.01 0.11 7.32 72.64 0.53 0.64 16 25 O -0.38 -5.53 8.27 -126.22 -1.04 -6.57 16 26 H 0.05 0.81 6.72 -2.38 -0.02 0.80 16 27 H 0.06 0.94 8.10 -2.39 -0.02 0.92 16 28 H 0.07 1.10 4.48 -2.39 -0.01 1.09 16 29 H 0.07 1.68 7.69 -2.39 -0.02 1.66 16 30 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.42 8.91 7.34 -96.74 -0.71 8.20 16 32 H 0.14 4.63 8.14 -2.39 -0.02 4.61 16 33 H 0.14 4.71 8.14 -2.39 -0.02 4.69 16 34 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 35 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 37 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.09 1.33 8.11 -2.39 -0.02 1.31 16 39 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 40 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.07 0.95 8.14 -2.39 -0.02 0.94 16 42 H 0.08 0.85 7.71 -2.39 -0.02 0.83 16 43 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.13 0.66 8.14 -2.38 -0.02 0.64 16 45 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -78.35 371.32 -1.40 -79.75 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: 0.26 Total: 19.41 kcal Atomic # 6 Polarization: -52.86 SS G_CDS: 4.23 Total: -48.63 kcal Atomic # 7 Polarization: -85.00 SS G_CDS: -0.79 Total: -85.79 kcal Atomic # 8 Polarization: -97.43 SS G_CDS: -6.82 Total: -104.25 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 16 Polarization: 94.39 SS G_CDS: -0.31 Total: 94.08 kcal Total: -78.35 -1.40 -79.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741252808.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.236 kcal (2) G-P(sol) polarization free energy of solvation -78.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds