Wall clock time and date at job start Fri Apr 10 2020 18:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86802 * 119.99848 * 2 1 4 4 H 1.48507 * 109.47089 * 270.00418 * 3 2 1 5 5 H 1.48500 * 109.47120 * 30.00142 * 3 2 1 6 6 H 1.48503 * 109.47360 * 150.00583 * 3 2 1 7 7 C 1.38652 * 120.00217 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99701 * 359.97438 * 7 2 1 9 9 O 1.34824 * 119.99921 * 179.97438 * 7 2 1 10 10 C 1.35756 * 117.00213 * 185.05325 * 9 7 2 11 11 C 1.38904 * 120.06405 * 354.47104 * 10 9 7 12 12 C 1.38079 * 119.92967 * 180.02562 * 11 10 9 13 13 C 1.38329 * 120.06626 * 359.97438 * 12 11 10 14 14 C 1.38270 * 120.13795 * 359.97438 * 13 12 11 15 15 C 1.50704 * 119.96432 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.46938 * 89.99935 * 15 14 13 17 17 O 1.21277 * 120.00179 * 0.02562 * 16 15 14 18 18 N 1.34778 * 119.99931 * 180.02562 * 16 15 14 19 19 C 1.46504 * 119.99925 * 180.02562 * 18 16 15 20 20 C 1.53000 * 109.47010 * 179.97438 * 19 18 16 21 21 H 1.09007 * 109.57834 * 59.83861 * 20 19 18 22 22 C 1.53145 * 109.52390 * 179.97438 * 20 19 18 23 23 O 1.43077 * 109.14923 * 175.21189 * 22 20 19 24 24 C 1.43071 * 113.59673 * 302.05269 * 23 22 20 25 25 C 1.53144 * 109.14913 * 57.95232 * 24 23 22 26 26 O 1.43068 * 109.20499 * 304.65160 * 25 24 23 27 27 C 1.38124 * 120.07312 * 0.25801 * 14 13 12 28 28 H 0.97000 * 120.00749 * 359.97438 * 1 2 3 29 29 H 1.07998 * 120.03747 * 359.96719 * 11 10 9 30 30 H 1.07999 * 119.96622 * 179.97438 * 12 11 10 31 31 H 1.08004 * 119.92524 * 179.97438 * 13 12 11 32 32 H 1.09005 * 109.46862 * 330.00487 * 15 14 13 33 33 H 1.08992 * 109.47571 * 210.00221 * 15 14 13 34 34 H 0.96996 * 120.00166 * 0.02562 * 18 16 15 35 35 H 1.08995 * 109.46967 * 60.00446 * 19 18 16 36 36 H 1.08995 * 109.46915 * 299.99867 * 19 18 16 37 37 H 1.08999 * 109.51938 * 55.31765 * 22 20 19 38 38 H 1.08993 * 109.52566 * 295.11659 * 22 20 19 39 39 H 1.08997 * 109.52367 * 298.05086 * 24 23 22 40 40 H 1.09001 * 109.57733 * 177.88454 * 24 23 22 41 41 H 1.08999 * 109.52621 * 64.59285 * 25 24 23 42 42 H 1.09005 * 109.52386 * 184.71831 * 25 24 23 43 43 H 1.07998 * 120.03218 * 179.72459 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4969 2.0465 -1.4001 5 1 1.4469 2.6527 0.7001 6 1 3.5472 1.4403 0.6999 7 6 2.0088 -1.2007 -0.0005 8 1 1.4688 -2.1360 -0.0005 9 8 3.3571 -1.2007 -0.0011 10 6 3.9735 -2.4055 -0.1081 11 6 3.2233 -3.5745 -0.0952 12 6 3.8532 -4.7984 -0.2037 13 6 5.2296 -4.8611 -0.3257 14 6 5.9790 -3.6992 -0.3400 15 6 7.4784 -3.7720 -0.4726 16 6 7.8561 -3.7350 -1.9310 17 8 6.9928 -3.6566 -2.7792 18 7 9.1533 -3.7889 -2.2927 19 6 9.5205 -3.7523 -3.7105 20 6 11.0428 -3.8264 -3.8451 21 1 11.4043 -4.7528 -3.3985 22 6 11.4280 -3.7889 -5.3269 23 8 12.8536 -3.7458 -5.4403 24 6 13.4477 -2.6287 -4.7724 25 6 13.0624 -2.6663 -3.2906 26 8 11.6370 -2.7086 -3.1759 27 6 5.3553 -2.4719 -0.2270 28 1 -0.4851 0.8400 0.0004 29 1 2.1487 -3.5262 0.0006 30 1 3.2706 -5.7077 -0.1933 31 1 5.7200 -5.8197 -0.4101 32 1 7.8378 -4.7000 -0.0277 33 1 7.9303 -2.9238 0.0414 34 1 9.8437 -3.8520 -1.6144 35 1 9.1616 -2.8240 -4.1549 36 1 9.0682 -4.6002 -4.2249 37 1 10.9985 -2.9019 -5.7925 38 1 11.0498 -4.6820 -5.8243 39 1 13.0861 -1.7026 -5.2193 40 1 14.5322 -2.6803 -4.8682 41 1 13.4919 -3.5533 -2.8250 42 1 13.4417 -1.7738 -2.7929 43 1 5.9416 -1.5650 -0.2337 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760386520.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:12 Heat of formation + Delta-G solvation = -125.765008 kcal Electronic energy + Delta-G solvation = -26041.036391 eV Core-core repulsion = 22052.373945 eV Total energy + Delta-G solvation = -3988.662446 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.56590 -39.72324 -38.84794 -36.77744 -36.50108 -34.98653 -32.54857 -32.30780 -31.79572 -29.46010 -29.10693 -27.43530 -25.87080 -25.07314 -23.58644 -21.77338 -21.67274 -21.08186 -20.07242 -17.72831 -17.52637 -17.41501 -17.04286 -16.74622 -16.68683 -16.02134 -15.58297 -15.45461 -15.12844 -14.89176 -14.60166 -14.06419 -13.88894 -13.77124 -13.50961 -13.38281 -13.15421 -12.89632 -12.51811 -12.35404 -12.31731 -12.11841 -11.94359 -11.61061 -11.26274 -11.20309 -10.90605 -10.78801 -10.71738 -10.70287 -10.10873 -9.87559 -9.62985 -9.33036 -9.18152 -8.81411 -8.08740 -7.29737 -6.35325 -4.01855 2.06539 2.34637 2.74488 2.97146 3.10890 3.25978 3.27210 3.30973 3.44825 4.07890 4.29251 4.29353 4.43225 4.47227 4.54390 4.57027 4.71466 4.78477 4.93990 4.97031 5.04953 5.14413 5.16431 5.20195 5.27834 5.34066 5.41275 5.55569 5.61767 5.74592 5.89646 6.17896 6.26631 6.31432 6.42680 6.49427 6.58776 6.84971 7.15933 7.27232 7.37265 7.42832 7.67078 7.87033 8.10563 8.28790 9.00347 9.63652 10.72572 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.017813 B = 0.002370 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.551997 B =11809.664325 C =12786.618804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.062 3.938 3 Si 0.905 3.095 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.388 4.388 8 H 0.106 0.894 9 O -0.220 6.220 10 C 0.160 3.840 11 C -0.217 4.217 12 C -0.076 4.076 13 C -0.188 4.188 14 C -0.035 4.035 15 C -0.093 4.093 16 C 0.514 3.486 17 O -0.519 6.519 18 N -0.733 5.733 19 C 0.130 3.870 20 C 0.043 3.957 21 H 0.077 0.923 22 C 0.032 3.968 23 O -0.377 6.377 24 C 0.021 3.979 25 C 0.025 3.975 26 O -0.371 6.371 27 C -0.175 4.175 28 H 0.278 0.722 29 H 0.132 0.868 30 H 0.110 0.890 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.402 0.598 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.067 0.933 38 H 0.110 0.890 39 H 0.063 0.937 40 H 0.106 0.894 41 H 0.062 0.938 42 H 0.107 0.893 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.615 -8.658 -5.761 29.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.463 4.463 8 H 0.123 0.877 9 O -0.125 6.125 10 C 0.108 3.892 11 C -0.237 4.237 12 C -0.095 4.095 13 C -0.207 4.207 14 C -0.035 4.035 15 C -0.133 4.133 16 C 0.300 3.700 17 O -0.393 6.393 18 N -0.387 5.387 19 C 0.006 3.994 20 C -0.015 4.015 21 H 0.094 0.906 22 C -0.045 4.045 23 O -0.296 6.296 24 C -0.056 4.056 25 C -0.052 4.052 26 O -0.290 6.290 27 C -0.194 4.194 28 H 0.089 0.911 29 H 0.150 0.850 30 H 0.128 0.872 31 H 0.123 0.877 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.236 0.764 35 H 0.095 0.905 36 H 0.103 0.897 37 H 0.086 0.914 38 H 0.128 0.872 39 H 0.081 0.919 40 H 0.124 0.876 41 H 0.080 0.920 42 H 0.125 0.875 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 26.841 -8.221 -6.372 28.786 hybrid contribution 0.533 0.677 0.258 0.899 sum 27.373 -7.545 -6.114 29.045 Atomic orbital electron populations 1.69645 1.05529 1.28370 1.48486 1.24452 0.95019 0.98767 0.95805 0.86187 0.80292 0.81497 0.78949 1.19917 1.20853 1.18399 1.20760 0.76935 0.96602 1.52025 0.87661 1.83567 1.22558 1.25658 1.80730 1.19008 0.91507 0.85557 0.93083 1.21295 1.01099 0.91958 1.09306 1.20736 0.94105 0.96731 0.97894 1.20415 0.93947 0.96480 1.09873 1.18657 0.92228 0.93015 0.99623 1.20578 0.95141 1.04594 0.92966 1.20765 0.81706 0.75794 0.91730 1.90769 1.48697 1.47178 1.52701 1.45861 1.08006 1.77194 1.07686 1.21219 0.90713 1.03580 0.83861 1.23064 0.94021 0.90576 0.93853 0.90561 1.23180 0.81928 1.04148 0.95251 1.88113 1.19557 1.47201 1.74721 1.23288 0.99568 0.90098 0.92613 1.23263 0.81915 1.03499 0.96558 1.88197 1.19509 1.46790 1.74508 1.19943 0.92022 0.96964 1.10465 0.91145 0.85001 0.87183 0.87738 0.88302 0.88204 0.76359 0.90527 0.89707 0.91449 0.87201 0.91889 0.87645 0.92012 0.87513 0.86826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.09 13.96 55.48 0.77 -25.31 16 2 C 0.06 1.80 5.49 -17.52 -0.10 1.70 16 3 Si 0.91 22.34 28.62 -169.99 -4.86 17.47 16 4 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.26 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.39 -11.28 9.95 30.89 0.31 -10.98 16 8 H 0.11 3.12 5.44 -52.49 -0.29 2.84 16 9 O -0.22 -6.04 8.59 0.05 0.00 -6.04 16 10 C 0.16 3.89 6.65 -39.11 -0.26 3.63 16 11 C -0.22 -4.94 9.17 -39.39 -0.36 -5.30 16 12 C -0.08 -1.46 10.04 -39.61 -0.40 -1.86 16 13 C -0.19 -3.33 9.70 -39.54 -0.38 -3.71 16 14 C -0.03 -0.61 4.37 -104.65 -0.46 -1.07 16 15 C -0.09 -1.18 5.83 -29.03 -0.17 -1.35 16 16 C 0.51 7.17 7.82 -10.99 -0.09 7.09 16 17 O -0.52 -9.86 16.03 5.56 0.09 -9.77 16 18 N -0.73 -7.35 5.45 -60.30 -0.33 -7.68 16 19 C 0.13 1.19 5.37 -4.04 -0.02 1.17 16 20 C 0.04 0.31 2.93 -26.66 -0.08 0.23 16 21 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 22 C 0.03 0.22 6.34 37.23 0.24 0.46 16 23 O -0.38 -3.01 10.85 -48.72 -0.53 -3.53 16 24 C 0.02 0.12 7.05 37.23 0.26 0.38 16 25 C 0.02 0.14 7.04 37.23 0.26 0.40 16 26 O -0.37 -3.06 10.26 -48.72 -0.50 -3.56 16 27 C -0.17 -3.67 9.64 -39.40 -0.38 -4.05 16 28 H 0.28 7.60 8.31 -40.82 -0.34 7.26 16 29 H 0.13 3.11 5.64 -52.49 -0.30 2.82 16 30 H 0.11 1.79 8.06 -52.49 -0.42 1.36 16 31 H 0.10 1.54 8.06 -52.48 -0.42 1.12 16 32 H 0.10 0.94 8.09 -51.93 -0.42 0.52 16 33 H 0.10 1.07 8.08 -51.93 -0.42 0.65 16 34 H 0.40 3.00 8.36 -40.82 -0.34 2.66 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 42 H 0.11 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.11 2.25 8.06 -52.49 -0.42 1.83 16 LS Contribution 363.84 15.07 5.48 5.48 Total: -1.00 -35.43 363.84 -7.47 -42.90 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -5.97 Total: 3.28 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: -1.62 Total: -13.24 kcal Atomic # 7 Polarization: -33.43 SS G_CDS: 0.45 Total: -32.99 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.94 Total: -22.91 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.86 Total: 17.47 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.43 -7.47 -42.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760386520.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.865 kcal (2) G-P(sol) polarization free energy of solvation -35.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds