Wall clock time and date at job start Fri Apr 10 2020 18:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86802 * 119.99848 * 2 1 4 4 H 1.48507 * 109.47089 * 270.00418 * 3 2 1 5 5 H 1.48500 * 109.47120 * 30.00142 * 3 2 1 6 6 H 1.48503 * 109.47360 * 150.00583 * 3 2 1 7 7 C 1.38652 * 120.00217 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99701 * 359.97438 * 7 2 1 9 9 O 1.34824 * 119.99921 * 179.97438 * 7 2 1 10 10 C 1.35756 * 117.00213 * 185.05325 * 9 7 2 11 11 C 1.38904 * 120.06405 * 354.47104 * 10 9 7 12 12 C 1.38079 * 119.92967 * 180.02562 * 11 10 9 13 13 C 1.38329 * 120.06626 * 359.97438 * 12 11 10 14 14 C 1.38270 * 120.13795 * 359.97438 * 13 12 11 15 15 C 1.50704 * 119.96432 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.46938 * 89.99935 * 15 14 13 17 17 O 1.21277 * 120.00179 * 0.02562 * 16 15 14 18 18 N 1.34778 * 119.99931 * 180.02562 * 16 15 14 19 19 C 1.46504 * 119.99925 * 180.02562 * 18 16 15 20 20 C 1.53000 * 109.47010 * 179.97438 * 19 18 16 21 21 H 1.09007 * 109.57834 * 59.83861 * 20 19 18 22 22 C 1.53145 * 109.52390 * 179.97438 * 20 19 18 23 23 O 1.43077 * 109.14923 * 175.21189 * 22 20 19 24 24 C 1.43071 * 113.59673 * 302.05269 * 23 22 20 25 25 C 1.53144 * 109.14913 * 57.95232 * 24 23 22 26 26 O 1.43068 * 109.20499 * 304.65160 * 25 24 23 27 27 C 1.38124 * 120.07312 * 0.25801 * 14 13 12 28 28 H 0.97000 * 120.00749 * 359.97438 * 1 2 3 29 29 H 1.07998 * 120.03747 * 359.96719 * 11 10 9 30 30 H 1.07999 * 119.96622 * 179.97438 * 12 11 10 31 31 H 1.08004 * 119.92524 * 179.97438 * 13 12 11 32 32 H 1.09005 * 109.46862 * 330.00487 * 15 14 13 33 33 H 1.08992 * 109.47571 * 210.00221 * 15 14 13 34 34 H 0.96996 * 120.00166 * 0.02562 * 18 16 15 35 35 H 1.08995 * 109.46967 * 60.00446 * 19 18 16 36 36 H 1.08995 * 109.46915 * 299.99867 * 19 18 16 37 37 H 1.08999 * 109.51938 * 55.31765 * 22 20 19 38 38 H 1.08993 * 109.52566 * 295.11659 * 22 20 19 39 39 H 1.08997 * 109.52367 * 298.05086 * 24 23 22 40 40 H 1.09001 * 109.57733 * 177.88454 * 24 23 22 41 41 H 1.08999 * 109.52621 * 64.59285 * 25 24 23 42 42 H 1.09005 * 109.52386 * 184.71831 * 25 24 23 43 43 H 1.07998 * 120.03218 * 179.72459 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4969 2.0465 -1.4001 5 1 1.4469 2.6527 0.7001 6 1 3.5472 1.4403 0.6999 7 6 2.0088 -1.2007 -0.0005 8 1 1.4688 -2.1360 -0.0005 9 8 3.3571 -1.2007 -0.0011 10 6 3.9735 -2.4055 -0.1081 11 6 3.2233 -3.5745 -0.0952 12 6 3.8532 -4.7984 -0.2037 13 6 5.2296 -4.8611 -0.3257 14 6 5.9790 -3.6992 -0.3400 15 6 7.4784 -3.7720 -0.4726 16 6 7.8561 -3.7350 -1.9310 17 8 6.9928 -3.6566 -2.7792 18 7 9.1533 -3.7889 -2.2927 19 6 9.5205 -3.7523 -3.7105 20 6 11.0428 -3.8264 -3.8451 21 1 11.4043 -4.7528 -3.3985 22 6 11.4280 -3.7889 -5.3269 23 8 12.8536 -3.7458 -5.4403 24 6 13.4477 -2.6287 -4.7724 25 6 13.0624 -2.6663 -3.2906 26 8 11.6370 -2.7086 -3.1759 27 6 5.3553 -2.4719 -0.2270 28 1 -0.4851 0.8400 0.0004 29 1 2.1487 -3.5262 0.0006 30 1 3.2706 -5.7077 -0.1933 31 1 5.7200 -5.8197 -0.4101 32 1 7.8378 -4.7000 -0.0277 33 1 7.9303 -2.9238 0.0414 34 1 9.8437 -3.8520 -1.6144 35 1 9.1616 -2.8240 -4.1549 36 1 9.0682 -4.6002 -4.2249 37 1 10.9985 -2.9019 -5.7925 38 1 11.0498 -4.6820 -5.8243 39 1 13.0861 -1.7026 -5.2193 40 1 14.5322 -2.6803 -4.8682 41 1 13.4919 -3.5533 -2.8250 42 1 13.4417 -1.7738 -2.7929 43 1 5.9416 -1.5650 -0.2337 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760386520.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:12 Heat of formation + Delta-G solvation = -152.014410 kcal Electronic energy + Delta-G solvation = -26042.174650 eV Core-core repulsion = 22052.373945 eV Total energy + Delta-G solvation = -3989.800706 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.29825 -40.93080 -40.30406 -38.32819 -37.22159 -35.84994 -34.48373 -33.64980 -32.69821 -31.08353 -29.80467 -28.56851 -27.23720 -26.52201 -24.21994 -23.33987 -22.57222 -22.23128 -21.28264 -19.66577 -18.95325 -18.18207 -18.01976 -17.43101 -17.38734 -16.86590 -16.79163 -16.65300 -16.14996 -16.06696 -15.72515 -15.68997 -15.54039 -14.97329 -14.57070 -14.48423 -14.41251 -14.17593 -13.93208 -13.86259 -13.37301 -13.05588 -12.84288 -12.77098 -12.51668 -12.43894 -12.41884 -12.33119 -11.92280 -11.73614 -11.39679 -11.31522 -10.99672 -10.89333 -10.20689 -10.10610 -9.66109 -9.05888 -8.50540 -6.23143 0.49225 0.70728 1.28773 1.34064 1.50074 1.69605 2.15055 2.27310 2.56085 2.74018 2.79681 3.03727 3.17328 3.58741 3.72013 3.78349 3.91879 4.02141 4.08395 4.14847 4.16531 4.30396 4.31577 4.40965 4.46389 4.56006 4.57965 4.62740 4.66479 4.71756 4.75538 4.87564 4.89740 4.98689 5.25350 5.39161 5.42142 5.65799 5.73245 5.76946 5.91845 5.95007 5.99535 6.25575 6.58491 6.83787 7.31519 7.59018 8.61320 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.017813 B = 0.002370 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.551997 B =11809.664325 C =12786.618804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.009 3.991 3 Si 0.971 3.029 4 H -0.269 1.269 5 H -0.263 1.263 6 H -0.262 1.262 7 C -0.399 4.399 8 H 0.080 0.920 9 O -0.247 6.247 10 C 0.118 3.882 11 C -0.241 4.241 12 C -0.078 4.078 13 C -0.170 4.170 14 C -0.028 4.028 15 C -0.090 4.090 16 C 0.514 3.486 17 O -0.579 6.579 18 N -0.713 5.713 19 C 0.129 3.871 20 C 0.053 3.947 21 H 0.092 0.908 22 C 0.030 3.970 23 O -0.394 6.394 24 C 0.016 3.984 25 C 0.023 3.977 26 O -0.392 6.392 27 C -0.183 4.183 28 H 0.285 0.715 29 H 0.107 0.893 30 H 0.141 0.859 31 H 0.150 0.850 32 H 0.145 0.855 33 H 0.125 0.875 34 H 0.418 0.582 35 H 0.056 0.944 36 H 0.090 0.910 37 H 0.060 0.940 38 H 0.124 0.876 39 H 0.058 0.942 40 H 0.126 0.874 41 H 0.072 0.928 42 H 0.122 0.878 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.711 -10.076 -5.448 33.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.793 3.207 4 H -0.194 1.194 5 H -0.188 1.188 6 H -0.187 1.187 7 C -0.476 4.476 8 H 0.097 0.903 9 O -0.155 6.155 10 C 0.069 3.931 11 C -0.260 4.260 12 C -0.096 4.096 13 C -0.188 4.188 14 C -0.028 4.028 15 C -0.129 4.129 16 C 0.301 3.699 17 O -0.458 6.458 18 N -0.366 5.366 19 C 0.005 3.995 20 C -0.005 4.005 21 H 0.110 0.890 22 C -0.047 4.047 23 O -0.313 6.313 24 C -0.060 4.060 25 C -0.054 4.054 26 O -0.312 6.312 27 C -0.202 4.202 28 H 0.094 0.906 29 H 0.125 0.875 30 H 0.159 0.841 31 H 0.168 0.832 32 H 0.163 0.837 33 H 0.143 0.857 34 H 0.256 0.744 35 H 0.074 0.926 36 H 0.108 0.892 37 H 0.079 0.921 38 H 0.142 0.858 39 H 0.076 0.924 40 H 0.143 0.857 41 H 0.090 0.910 42 H 0.140 0.860 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 31.017 -9.678 -6.039 33.049 hybrid contribution -0.492 0.836 0.117 0.977 sum 30.525 -8.842 -5.923 32.327 Atomic orbital electron populations 1.69726 1.06827 1.29563 1.50357 1.25285 0.95931 1.02139 0.95600 0.85221 0.78868 0.77464 0.79152 1.19443 1.18774 1.18666 1.20714 0.78148 0.96132 1.52576 0.90258 1.83504 1.21224 1.27420 1.83392 1.19601 0.93101 0.85189 0.95211 1.21326 1.00158 0.93453 1.11056 1.21127 0.95502 0.96268 0.96707 1.21026 0.93233 0.98479 1.06107 1.19229 0.95392 0.91588 0.96630 1.20695 0.91313 1.08196 0.92662 1.20943 0.82215 0.75007 0.91690 1.90767 1.50480 1.50374 1.54220 1.45687 1.07210 1.75123 1.08621 1.21260 0.92300 1.02785 0.83164 1.22956 0.92393 0.90969 0.94145 0.89025 1.23240 0.81692 1.04602 0.95184 1.88092 1.19925 1.48056 1.75197 1.23461 1.00652 0.89334 0.92590 1.23431 0.80591 1.04748 0.96601 1.88156 1.21063 1.47264 1.74697 1.20281 0.90658 0.99004 1.10245 0.90570 0.87518 0.84114 0.83221 0.83701 0.85729 0.74444 0.92606 0.89199 0.92150 0.85808 0.92353 0.85660 0.90985 0.86049 0.86166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.02 13.96 21.61 0.30 -56.72 16 2 C 0.01 0.51 5.49 84.83 0.47 0.98 16 3 Si 0.97 47.41 28.62 68.60 1.96 49.37 16 4 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 5 H -0.26 -11.84 7.11 99.48 0.71 -11.14 16 6 H -0.26 -12.75 7.11 99.48 0.71 -12.04 16 7 C -0.40 -24.73 9.95 67.92 0.68 -24.05 16 8 H 0.08 5.14 5.44 -2.91 -0.02 5.12 16 9 O -0.25 -14.29 8.59 -22.75 -0.20 -14.48 16 10 C 0.12 5.93 6.65 22.58 0.15 6.08 16 11 C -0.24 -11.36 9.17 22.39 0.21 -11.16 16 12 C -0.08 -2.88 10.04 22.25 0.22 -2.66 16 13 C -0.17 -5.38 9.70 22.30 0.22 -5.16 16 14 C -0.03 -0.90 4.37 -19.88 -0.09 -0.99 16 15 C -0.09 -1.84 5.83 29.10 0.17 -1.67 16 16 C 0.51 12.73 7.82 87.66 0.69 13.42 16 17 O -0.58 -21.15 16.03 -3.02 -0.05 -21.19 16 18 N -0.71 -11.92 5.45 -463.07 -2.52 -14.45 16 19 C 0.13 2.11 5.37 86.38 0.46 2.57 16 20 C 0.05 0.64 2.93 30.64 0.09 0.73 16 21 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 22 C 0.03 0.36 6.34 72.03 0.46 0.82 16 23 O -0.39 -5.52 10.85 -136.08 -1.48 -7.00 16 24 C 0.02 0.15 7.05 72.03 0.51 0.66 16 25 C 0.02 0.19 7.04 72.03 0.51 0.70 16 26 O -0.39 -5.50 10.26 -136.08 -1.40 -6.90 16 27 C -0.18 -7.59 9.64 22.39 0.22 -7.37 16 28 H 0.28 16.07 8.31 -92.71 -0.77 15.30 16 29 H 0.11 5.48 5.64 -2.91 -0.02 5.47 16 30 H 0.14 4.24 8.06 -2.91 -0.02 4.22 16 31 H 0.15 3.47 8.06 -2.91 -0.02 3.44 16 32 H 0.15 1.74 8.09 -2.38 -0.02 1.72 16 33 H 0.12 2.05 8.08 -2.39 -0.02 2.03 16 34 H 0.42 4.41 8.36 -92.71 -0.77 3.63 16 35 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.06 0.78 8.14 -2.39 -0.02 0.77 16 38 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.13 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 42 H 0.12 0.66 8.14 -2.38 -0.02 0.64 16 43 H 0.12 4.71 8.06 -2.91 -0.02 4.69 16 Total: -1.00 -82.54 363.84 1.83 -80.71 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: 0.26 Total: 17.77 kcal Atomic # 6 Polarization: -32.06 SS G_CDS: 4.95 Total: -27.12 kcal Atomic # 7 Polarization: -68.95 SS G_CDS: -2.22 Total: -71.17 kcal Atomic # 8 Polarization: -46.46 SS G_CDS: -3.12 Total: -49.57 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 1.96 Total: 49.37 kcal Total: -82.54 1.83 -80.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760386520.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.300 kcal (2) G-P(sol) polarization free energy of solvation -82.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds