Wall clock time and date at job start Fri Apr 10 2020 18:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42905 * 114.00030 * 2 1 4 4 C 1.53001 * 109.47408 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.46707 * 174.99629 * 4 3 2 6 6 N 1.46499 * 109.47277 * 295.00032 * 4 3 2 7 7 S 1.65597 * 119.99926 * 265.27680 * 6 4 3 8 8 O 1.42100 * 104.27735 * 180.79571 * 7 6 4 9 9 O 1.42101 * 104.27674 * 308.65500 * 7 6 4 10 10 C 1.81402 * 104.45066 * 64.71997 * 7 6 4 11 11 C 1.53002 * 109.47127 * 180.02562 * 10 7 6 12 12 C 1.50698 * 109.47312 * 180.02562 * 11 10 7 13 13 H 1.08006 * 119.99731 * 359.97438 * 12 11 10 14 14 C 1.37873 * 120.00306 * 180.02562 * 12 11 10 15 15 N 1.31518 * 120.00075 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 119.99901 * 359.97438 * 14 12 11 17 17 H 1.48508 * 109.46735 * 90.00263 * 16 14 12 18 18 H 1.48496 * 109.47539 * 210.00051 * 16 14 12 19 19 H 1.48494 * 109.47283 * 330.00473 * 16 14 12 20 20 C 1.53000 * 109.46866 * 55.00098 * 4 3 2 21 21 H 1.09000 * 109.52241 * 300.12705 * 20 4 3 22 22 C 1.53176 * 109.52446 * 60.31048 * 20 4 3 23 23 C 1.53179 * 109.03631 * 176.88250 * 22 20 4 24 24 C 1.53089 * 109.16729 * 303.02405 * 23 22 20 25 25 O 1.42902 * 109.41243 * 57.60231 * 24 23 22 26 26 C 1.42895 * 114.10528 * 298.84425 * 25 24 23 27 27 H 1.08999 * 109.47123 * 299.99824 * 1 2 3 28 28 H 1.08997 * 109.47435 * 60.00507 * 1 2 3 29 29 H 1.09004 * 109.47004 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46920 * 59.99644 * 3 2 1 31 31 H 1.09000 * 109.46795 * 300.00102 * 3 2 1 32 32 H 0.97001 * 119.99790 * 84.99468 * 6 4 3 33 33 H 1.08990 * 109.47555 * 300.00369 * 10 7 6 34 34 H 1.09004 * 109.46533 * 60.00490 * 10 7 6 35 35 H 1.09004 * 109.47124 * 300.00530 * 11 10 7 36 36 H 1.08998 * 109.47317 * 60.00145 * 11 10 7 37 37 H 0.97006 * 119.99413 * 179.97438 * 15 14 12 38 38 H 1.08996 * 109.54574 * 296.75391 * 22 20 4 39 39 H 1.09002 * 109.54297 * 57.02320 * 22 20 4 40 40 H 1.09005 * 109.52420 * 183.11667 * 23 22 20 41 41 H 1.08999 * 109.57155 * 62.96044 * 23 22 20 42 42 H 1.09005 * 109.47576 * 297.62583 * 24 23 22 43 43 H 1.08995 * 109.49244 * 177.59871 * 24 23 22 44 44 H 1.09001 * 109.48082 * 301.17417 * 26 25 24 45 45 H 1.08995 * 109.49338 * 181.14743 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 1 3.9784 2.1767 -0.0890 6 7 3.9757 0.5645 1.2527 7 16 4.4388 1.5132 2.5286 8 8 4.8104 0.5853 3.5386 9 8 5.3903 2.4097 1.9714 10 6 2.9300 2.4011 3.0036 11 6 3.2317 3.3226 4.1871 12 6 1.9781 4.0598 4.5822 13 1 1.0582 3.8884 4.0428 14 6 2.0057 4.9537 5.6315 15 7 0.9117 5.5974 5.9760 16 14 3.5968 5.2505 6.5640 17 1 4.3461 6.3612 5.9234 18 1 3.2865 5.6097 7.9711 19 1 4.4230 4.0169 6.5387 20 6 3.9790 0.3195 -1.1807 21 1 3.5346 -0.6719 -1.0931 22 6 3.5260 0.9709 -2.4909 23 6 4.0424 0.1376 -3.6679 24 6 5.5660 0.0230 -3.5724 25 8 5.9206 -0.5621 -2.3177 26 6 5.5051 0.1979 -1.1812 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.6885 1.8464 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 3.9921 -0.4018 1.3358 33 1 2.5779 2.9960 2.1610 34 1 2.1606 1.6834 3.2885 35 1 3.5841 2.7280 5.0300 36 1 4.0010 4.0403 3.9020 37 1 0.9311 6.2260 6.7145 38 1 2.4371 1.0096 -2.5215 39 1 3.9301 1.9813 -2.5546 40 1 3.7718 0.6239 -4.6051 41 1 3.5994 -0.8577 -3.6328 42 1 6.0107 1.0153 -3.6493 43 1 5.9351 -0.6046 -4.3835 44 1 5.9490 1.1924 -1.2268 45 1 5.8301 -0.3037 -0.2697 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885744748.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:10 Heat of formation + Delta-G solvation = -180.534425 kcal Electronic energy + Delta-G solvation = -26806.136775 eV Core-core repulsion = 22950.543300 eV Total energy + Delta-G solvation = -3855.593475 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.99106 -38.16869 -36.75861 -35.88614 -35.57375 -34.00477 -33.48007 -31.54461 -31.08743 -28.90037 -26.30151 -26.00594 -25.29471 -23.86357 -21.76731 -21.26729 -20.38103 -19.03945 -17.75685 -17.12851 -16.74515 -16.42870 -16.32407 -15.96730 -15.65432 -15.53482 -15.29193 -14.84082 -14.80434 -14.34032 -14.11566 -13.70363 -13.32694 -13.02394 -12.90447 -12.82977 -12.57822 -12.21618 -11.95298 -11.80163 -11.73078 -11.66751 -11.51905 -11.39217 -11.28045 -11.21173 -11.14691 -10.79785 -10.52076 -10.47557 -10.21334 -9.89333 -9.75833 -9.63742 -9.47564 -9.19524 -8.69462 -6.20039 -4.21469 0.63012 2.94698 3.24278 3.31972 3.36264 3.60851 3.68012 4.08626 4.33075 4.35469 4.44896 4.55631 4.63396 4.65805 4.80119 5.02971 5.03587 5.10562 5.12012 5.12615 5.24451 5.26818 5.33177 5.36218 5.40795 5.44016 5.53857 5.56233 5.57246 5.63182 5.67207 5.75791 5.86167 6.01526 6.19094 6.24171 6.77413 6.89235 6.97513 7.02188 7.05967 7.51219 8.32556 8.80279 9.39771 10.92262 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.017885 B = 0.003706 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.209349 B = 7553.123008 C = 8346.497625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.380 6.380 3 C 0.031 3.969 4 C 0.159 3.841 5 H 0.108 0.892 6 N -1.115 6.115 7 S 2.587 3.413 8 O -0.964 6.964 9 O -0.965 6.965 10 C -0.586 4.586 11 C -0.007 4.007 12 C -0.519 4.519 13 H 0.077 0.923 14 C 0.072 3.928 15 N -0.896 5.896 16 Si 0.869 3.131 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.262 1.262 20 C -0.118 4.118 21 H 0.097 0.903 22 C -0.119 4.119 23 C -0.153 4.153 24 C 0.057 3.943 25 O -0.382 6.382 26 C 0.063 3.937 27 H 0.045 0.955 28 H 0.039 0.961 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.418 0.582 33 H 0.123 0.877 34 H 0.128 0.872 35 H 0.033 0.967 36 H 0.028 0.972 37 H 0.267 0.733 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.050 0.950 43 H 0.090 0.910 44 H 0.056 0.944 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.821 -11.040 -19.584 22.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.299 6.299 3 C -0.047 4.047 4 C 0.051 3.949 5 H 0.125 0.875 6 N -0.871 5.871 7 S 2.684 3.316 8 O -0.954 6.954 9 O -0.955 6.955 10 C -0.719 4.719 11 C -0.046 4.046 12 C -0.558 4.558 13 H 0.095 0.905 14 C -0.131 4.131 15 N -0.533 5.533 16 Si 0.695 3.305 17 H -0.197 1.197 18 H -0.207 1.207 19 H -0.186 1.186 20 C -0.138 4.138 21 H 0.115 0.885 22 C -0.157 4.157 23 C -0.191 4.191 24 C -0.020 4.020 25 O -0.301 6.301 26 C -0.014 4.014 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.103 0.897 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.252 0.748 33 H 0.141 0.859 34 H 0.146 0.854 35 H 0.051 0.949 36 H 0.047 0.953 37 H 0.076 0.924 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.068 0.932 43 H 0.109 0.891 44 H 0.074 0.926 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.871 -11.035 -19.099 22.395 hybrid contribution -0.576 0.534 0.474 0.918 sum 3.295 -10.500 -18.625 21.633 Atomic orbital electron populations 1.22769 0.81086 1.02684 1.00258 1.87862 1.19509 1.27050 1.95438 1.23354 0.93837 0.85808 1.01731 1.20871 0.91984 0.97869 0.84215 0.87457 1.55748 1.84766 1.20042 1.26560 1.05668 0.77887 0.74819 0.73183 1.93570 1.82438 1.61516 1.57891 1.93554 1.58125 1.66464 1.77383 1.30427 1.18933 1.12403 1.10105 1.19410 0.99802 0.94296 0.91092 1.20826 0.94927 1.23393 1.16689 0.90494 1.24983 0.96380 0.95114 0.96608 1.69883 1.27475 1.27166 1.28816 0.86926 0.84181 0.79660 0.79705 1.19652 1.20738 1.18592 1.21924 0.97076 1.01254 0.93576 0.88463 1.21678 1.01511 0.99051 0.93438 1.22159 0.96866 1.01331 0.98720 1.22588 0.94256 0.98559 0.86560 1.87944 1.78988 1.49292 1.13836 1.22672 0.92939 0.96746 0.88997 0.93604 0.94251 0.89723 0.91738 0.91874 0.74764 0.85910 0.85402 0.94899 0.95350 0.92361 0.90866 0.91470 0.90914 0.90972 0.93188 0.89134 0.92594 0.88491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.37 16 2 O -0.38 -4.06 9.77 -35.23 -0.34 -4.40 16 3 C 0.03 0.32 5.26 37.16 0.20 0.51 16 4 C 0.16 1.69 2.18 -67.93 -0.15 1.54 16 5 H 0.11 1.12 7.49 -51.93 -0.39 0.73 16 6 N -1.11 -13.60 4.59 -4.89 -0.02 -13.62 16 7 S 2.59 42.59 5.44 -107.50 -0.58 42.00 16 8 O -0.96 -18.79 18.08 -57.54 -1.04 -19.83 16 9 O -0.97 -17.97 17.40 -57.54 -1.00 -18.97 16 10 C -0.59 -10.36 5.01 37.16 0.19 -10.17 16 11 C -0.01 -0.16 4.05 -27.88 -0.11 -0.27 16 12 C -0.52 -14.21 9.66 -34.44 -0.33 -14.54 16 13 H 0.08 2.20 7.99 -52.48 -0.42 1.78 16 14 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 15 N -0.90 -26.71 13.96 55.43 0.77 -25.94 16 16 Si 0.87 21.26 27.47 -169.99 -4.67 16.59 16 17 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 19 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 20 C -0.12 -1.14 1.88 -90.48 -0.17 -1.31 16 21 H 0.10 1.01 7.56 -51.93 -0.39 0.61 16 22 C -0.12 -0.95 4.87 -26.55 -0.13 -1.08 16 23 C -0.15 -1.12 6.14 -26.59 -0.16 -1.29 16 24 C 0.06 0.48 6.84 37.20 0.25 0.73 16 25 O -0.38 -4.34 10.76 -35.23 -0.38 -4.71 16 26 C 0.06 0.69 5.93 37.21 0.22 0.91 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.71 5.68 -51.93 -0.30 0.41 16 31 H 0.06 0.53 6.80 -51.93 -0.35 0.17 16 32 H 0.42 4.55 8.80 -34.47 -0.30 4.25 16 33 H 0.12 1.91 6.87 -51.93 -0.36 1.55 16 34 H 0.13 2.09 8.14 -51.92 -0.42 1.67 16 35 H 0.03 0.77 7.20 -51.93 -0.37 0.40 16 36 H 0.03 0.65 7.57 -51.93 -0.39 0.25 16 37 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.07 0.55 6.74 -51.93 -0.35 0.20 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.10 1.09 7.69 -51.93 -0.40 0.69 16 LS Contribution 366.64 15.07 5.53 5.53 Total: -1.00 -34.44 366.64 -8.35 -42.79 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -7.42 Total: 2.23 kcal Atomic # 6 Polarization: -22.46 SS G_CDS: 0.82 Total: -21.65 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: 0.75 Total: -39.56 kcal Atomic # 8 Polarization: -45.16 SS G_CDS: -2.76 Total: -47.92 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.67 Total: 16.59 kcal Atomic # 16 Polarization: 42.59 SS G_CDS: -0.58 Total: 42.00 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.44 -8.35 -42.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885744748.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.749 kcal (2) G-P(sol) polarization free energy of solvation -34.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds