Wall clock time and date at job start Fri Apr 10 2020 18:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42905 * 114.00030 * 2 1 4 4 C 1.53001 * 109.47408 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.46707 * 174.99629 * 4 3 2 6 6 N 1.46499 * 109.47277 * 295.00032 * 4 3 2 7 7 S 1.65597 * 119.99926 * 265.27680 * 6 4 3 8 8 O 1.42100 * 104.27735 * 180.79571 * 7 6 4 9 9 O 1.42101 * 104.27674 * 308.65500 * 7 6 4 10 10 C 1.81402 * 104.45066 * 64.71997 * 7 6 4 11 11 C 1.53002 * 109.47127 * 180.02562 * 10 7 6 12 12 C 1.50698 * 109.47312 * 180.02562 * 11 10 7 13 13 H 1.08006 * 119.99731 * 359.97438 * 12 11 10 14 14 C 1.37873 * 120.00306 * 180.02562 * 12 11 10 15 15 N 1.31518 * 120.00075 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 119.99901 * 359.97438 * 14 12 11 17 17 H 1.48508 * 109.46735 * 90.00263 * 16 14 12 18 18 H 1.48496 * 109.47539 * 210.00051 * 16 14 12 19 19 H 1.48494 * 109.47283 * 330.00473 * 16 14 12 20 20 C 1.53000 * 109.46866 * 55.00098 * 4 3 2 21 21 H 1.09000 * 109.52241 * 300.12705 * 20 4 3 22 22 C 1.53176 * 109.52446 * 60.31048 * 20 4 3 23 23 C 1.53179 * 109.03631 * 176.88250 * 22 20 4 24 24 C 1.53089 * 109.16729 * 303.02405 * 23 22 20 25 25 O 1.42902 * 109.41243 * 57.60231 * 24 23 22 26 26 C 1.42895 * 114.10528 * 298.84425 * 25 24 23 27 27 H 1.08999 * 109.47123 * 299.99824 * 1 2 3 28 28 H 1.08997 * 109.47435 * 60.00507 * 1 2 3 29 29 H 1.09004 * 109.47004 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46920 * 59.99644 * 3 2 1 31 31 H 1.09000 * 109.46795 * 300.00102 * 3 2 1 32 32 H 0.97001 * 119.99790 * 84.99468 * 6 4 3 33 33 H 1.08990 * 109.47555 * 300.00369 * 10 7 6 34 34 H 1.09004 * 109.46533 * 60.00490 * 10 7 6 35 35 H 1.09004 * 109.47124 * 300.00530 * 11 10 7 36 36 H 1.08998 * 109.47317 * 60.00145 * 11 10 7 37 37 H 0.97006 * 119.99413 * 179.97438 * 15 14 12 38 38 H 1.08996 * 109.54574 * 296.75391 * 22 20 4 39 39 H 1.09002 * 109.54297 * 57.02320 * 22 20 4 40 40 H 1.09005 * 109.52420 * 183.11667 * 23 22 20 41 41 H 1.08999 * 109.57155 * 62.96044 * 23 22 20 42 42 H 1.09005 * 109.47576 * 297.62583 * 24 23 22 43 43 H 1.08995 * 109.49244 * 177.59871 * 24 23 22 44 44 H 1.09001 * 109.48082 * 301.17417 * 26 25 24 45 45 H 1.08995 * 109.49338 * 181.14743 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 1 3.9784 2.1767 -0.0890 6 7 3.9757 0.5645 1.2527 7 16 4.4388 1.5132 2.5286 8 8 4.8104 0.5853 3.5386 9 8 5.3903 2.4097 1.9714 10 6 2.9300 2.4011 3.0036 11 6 3.2317 3.3226 4.1871 12 6 1.9781 4.0598 4.5822 13 1 1.0582 3.8884 4.0428 14 6 2.0057 4.9537 5.6315 15 7 0.9117 5.5974 5.9760 16 14 3.5968 5.2505 6.5640 17 1 4.3461 6.3612 5.9234 18 1 3.2865 5.6097 7.9711 19 1 4.4230 4.0169 6.5387 20 6 3.9790 0.3195 -1.1807 21 1 3.5346 -0.6719 -1.0931 22 6 3.5260 0.9709 -2.4909 23 6 4.0424 0.1376 -3.6679 24 6 5.5660 0.0230 -3.5724 25 8 5.9206 -0.5621 -2.3177 26 6 5.5051 0.1979 -1.1812 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.6885 1.8464 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 3.9921 -0.4018 1.3358 33 1 2.5779 2.9960 2.1610 34 1 2.1606 1.6834 3.2885 35 1 3.5841 2.7280 5.0300 36 1 4.0010 4.0403 3.9020 37 1 0.9311 6.2260 6.7145 38 1 2.4371 1.0096 -2.5215 39 1 3.9301 1.9813 -2.5546 40 1 3.7718 0.6239 -4.6051 41 1 3.5994 -0.8577 -3.6328 42 1 6.0107 1.0153 -3.6493 43 1 5.9351 -0.6046 -4.3835 44 1 5.9490 1.1924 -1.2268 45 1 5.8301 -0.3037 -0.2697 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885744748.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:09 Heat of formation + Delta-G solvation = -207.720284 kcal Electronic energy + Delta-G solvation = -26807.315642 eV Core-core repulsion = 22950.543300 eV Total energy + Delta-G solvation = -3856.772342 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.75955 -38.95502 -38.18027 -37.07474 -36.71195 -35.90838 -34.23545 -33.49510 -31.88930 -29.72920 -27.90508 -26.98027 -26.00591 -24.65618 -23.18655 -22.43865 -21.17575 -20.29346 -19.39370 -18.54214 -17.81900 -17.30900 -17.21795 -16.92264 -16.86433 -16.53790 -16.32486 -16.16078 -15.88707 -15.52961 -15.24851 -14.86501 -14.75629 -14.13131 -13.85565 -13.75351 -13.70481 -13.33138 -13.24909 -13.17676 -13.13637 -13.06692 -12.96837 -12.57289 -12.31509 -12.22322 -12.03789 -11.97141 -11.86131 -11.71711 -11.55995 -11.34478 -11.17527 -10.84087 -10.55857 -10.52888 -10.21665 -8.36524 -6.41882 -0.73021 1.31922 1.34523 1.44096 1.74717 2.29613 2.73065 2.85618 2.94814 2.97813 3.21412 3.56268 3.78715 3.82736 3.89275 3.99650 4.05502 4.13226 4.26122 4.31274 4.36315 4.42989 4.52508 4.58051 4.59386 4.61449 4.70244 4.75817 4.83106 4.86721 4.92537 4.98585 5.07053 5.09726 5.13130 5.20837 5.29600 5.47076 5.47656 6.08180 6.16656 6.23769 6.29202 6.63922 7.22615 8.78843 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.017885 B = 0.003706 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.209349 B = 7553.123008 C = 8346.497625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.392 6.392 3 C 0.029 3.971 4 C 0.152 3.848 5 H 0.113 0.887 6 N -1.099 6.099 7 S 2.618 3.382 8 O -0.994 6.994 9 O -0.984 6.984 10 C -0.590 4.590 11 C -0.017 4.017 12 C -0.524 4.524 13 H 0.051 0.949 14 C 0.015 3.985 15 N -0.940 5.940 16 Si 0.923 3.077 17 H -0.259 1.259 18 H -0.276 1.276 19 H -0.251 1.251 20 C -0.108 4.108 21 H 0.092 0.908 22 C -0.119 4.119 23 C -0.148 4.148 24 C 0.048 3.952 25 O -0.402 6.402 26 C 0.060 3.940 27 H 0.036 0.964 28 H 0.054 0.946 29 H 0.096 0.904 30 H 0.055 0.945 31 H 0.086 0.914 32 H 0.426 0.574 33 H 0.142 0.858 34 H 0.138 0.862 35 H 0.030 0.970 36 H 0.034 0.966 37 H 0.269 0.731 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.093 0.907 41 H 0.067 0.933 42 H 0.055 0.945 43 H 0.104 0.896 44 H 0.053 0.947 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.468 -11.502 -21.252 24.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.311 6.311 3 C -0.050 4.050 4 C 0.044 3.956 5 H 0.130 0.870 6 N -0.859 5.859 7 S 2.714 3.286 8 O -0.984 6.984 9 O -0.974 6.974 10 C -0.722 4.722 11 C -0.056 4.056 12 C -0.563 4.563 13 H 0.069 0.931 14 C -0.184 4.184 15 N -0.579 5.579 16 Si 0.746 3.254 17 H -0.184 1.184 18 H -0.201 1.201 19 H -0.174 1.174 20 C -0.128 4.128 21 H 0.110 0.890 22 C -0.157 4.157 23 C -0.186 4.186 24 C -0.028 4.028 25 O -0.322 6.322 26 C -0.017 4.017 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.114 0.886 30 H 0.073 0.927 31 H 0.104 0.896 32 H 0.263 0.737 33 H 0.160 0.840 34 H 0.156 0.844 35 H 0.048 0.952 36 H 0.052 0.948 37 H 0.078 0.922 38 H 0.101 0.899 39 H 0.092 0.908 40 H 0.111 0.889 41 H 0.086 0.914 42 H 0.073 0.927 43 H 0.122 0.878 44 H 0.071 0.929 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.510 -11.501 -20.771 24.167 hybrid contribution -0.843 0.617 0.866 1.357 sum 3.667 -10.884 -19.905 22.980 Atomic orbital electron populations 1.22900 0.80223 1.03606 1.00551 1.87844 1.20480 1.27234 1.95540 1.23385 0.93223 0.85932 1.02431 1.21132 0.92647 0.98268 0.83521 0.86953 1.55358 1.84539 1.20095 1.25946 1.04558 0.76865 0.74172 0.73043 1.93525 1.82838 1.62244 1.59777 1.93528 1.58660 1.67416 1.77763 1.30428 1.20585 1.12303 1.08838 1.19374 0.97915 0.95060 0.93232 1.21150 0.95719 1.23356 1.16108 0.93105 1.25843 0.99577 0.95158 0.97830 1.70007 1.29680 1.28376 1.29873 0.86058 0.80456 0.80261 0.78673 1.18386 1.20079 1.17440 1.21820 0.96086 1.00902 0.94009 0.89014 1.21721 1.02131 0.99342 0.92528 1.22130 0.95889 1.01205 0.99345 1.22822 0.95224 0.99080 0.85653 1.87914 1.79451 1.49971 1.14834 1.22667 0.93792 0.96374 0.88873 0.94548 0.92714 0.88598 0.92683 0.89560 0.73704 0.83958 0.84404 0.95210 0.94823 0.92158 0.89928 0.90759 0.88891 0.91418 0.92652 0.87803 0.92896 0.89449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 11.01 113.37 1.25 1.62 16 2 O -0.39 -7.61 9.77 -148.98 -1.46 -9.07 16 3 C 0.03 0.52 5.26 71.98 0.38 0.90 16 4 C 0.15 2.95 2.18 44.99 0.10 3.05 16 5 H 0.11 2.11 7.49 -2.39 -0.02 2.09 16 6 N -1.10 -25.31 4.59 -169.39 -0.78 -26.09 16 7 S 2.62 83.16 5.44 -56.49 -0.31 82.86 16 8 O -0.99 -37.88 18.08 -127.65 -2.31 -40.18 16 9 O -0.98 -35.31 17.40 -127.65 -2.22 -37.53 16 10 C -0.59 -20.33 5.01 71.98 0.36 -19.97 16 11 C -0.02 -0.77 4.05 29.85 0.12 -0.65 16 12 C -0.52 -28.95 9.66 25.60 0.25 -28.70 16 13 H 0.05 2.98 7.99 -2.91 -0.02 2.96 16 14 C 0.01 0.83 5.47 84.65 0.46 1.29 16 15 N -0.94 -56.98 13.96 21.45 0.30 -56.68 16 16 Si 0.92 43.33 27.47 68.60 1.88 45.21 16 17 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 18 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 19 H -0.25 -11.23 6.54 99.48 0.65 -10.58 16 20 C -0.11 -1.88 1.88 -10.70 -0.02 -1.90 16 21 H 0.09 1.74 7.56 -2.39 -0.02 1.72 16 22 C -0.12 -1.59 4.87 30.71 0.15 -1.44 16 23 C -0.15 -1.79 6.14 30.68 0.19 -1.60 16 24 C 0.05 0.71 6.84 72.01 0.49 1.20 16 25 O -0.40 -8.65 10.76 -148.98 -1.60 -10.25 16 26 C 0.06 1.24 5.93 72.01 0.43 1.66 16 27 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 30 H 0.06 1.11 5.68 -2.38 -0.01 1.10 16 31 H 0.09 1.19 6.80 -2.39 -0.02 1.17 16 32 H 0.43 8.73 8.80 -96.74 -0.85 7.88 16 33 H 0.14 4.26 6.87 -2.40 -0.02 4.25 16 34 H 0.14 4.42 8.14 -2.39 -0.02 4.40 16 35 H 0.03 1.37 7.20 -2.38 -0.02 1.35 16 36 H 0.03 1.50 7.57 -2.39 -0.02 1.48 16 37 H 0.27 15.25 8.31 -92.70 -0.77 14.48 16 38 H 0.08 0.97 6.74 -2.39 -0.02 0.95 16 39 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 41 H 0.07 0.89 8.14 -2.39 -0.02 0.88 16 42 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 43 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.09 1.91 7.69 -2.39 -0.02 1.89 16 Total: -1.00 -73.55 366.64 -2.26 -75.81 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: 0.07 Total: 20.46 kcal Atomic # 6 Polarization: -48.68 SS G_CDS: 4.15 Total: -44.53 kcal Atomic # 7 Polarization: -82.29 SS G_CDS: -0.48 Total: -82.77 kcal Atomic # 8 Polarization: -89.45 SS G_CDS: -7.59 Total: -97.04 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 1.88 Total: 45.21 kcal Atomic # 16 Polarization: 83.16 SS G_CDS: -0.31 Total: 82.86 kcal Total: -73.55 -2.26 -75.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885744748.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.912 kcal (2) G-P(sol) polarization free energy of solvation -73.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds