Wall clock time and date at job start Fri Apr 10 2020 18:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42903 * 113.99605 * 2 1 4 4 C 1.53002 * 109.47160 * 180.02562 * 3 2 1 5 5 H 1.08995 * 109.46888 * 184.51986 * 4 3 2 6 6 N 1.46497 * 109.47092 * 64.51498 * 4 3 2 7 7 S 1.65596 * 119.99879 * 94.99995 * 6 4 3 8 8 O 1.42108 * 104.27857 * 181.07133 * 7 6 4 9 9 O 1.42102 * 104.28167 * 308.92736 * 7 6 4 10 10 C 1.81396 * 104.44957 * 65.00284 * 7 6 4 11 11 C 1.52998 * 109.47270 * 180.02562 * 10 7 6 12 12 C 1.50710 * 109.47250 * 179.97438 * 11 10 7 13 13 H 1.07997 * 119.99772 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00074 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99641 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 119.99930 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47149 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47294 * 119.99536 * 16 14 12 19 19 H 1.48497 * 109.47394 * 239.99955 * 16 14 12 20 20 C 1.52998 * 109.46960 * 304.51915 * 4 3 2 21 21 H 1.08998 * 109.52798 * 56.06504 * 20 4 3 22 22 C 1.53178 * 109.52218 * 176.19220 * 20 4 3 23 23 C 1.53188 * 109.03192 * 176.82101 * 22 20 4 24 24 C 1.53095 * 109.21295 * 303.11157 * 23 22 20 25 25 O 1.42903 * 109.41430 * 57.57787 * 24 23 22 26 26 C 1.42909 * 114.09919 * 298.84087 * 25 24 23 27 27 H 1.08999 * 109.47629 * 60.00433 * 1 2 3 28 28 H 1.09007 * 109.46431 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47335 * 299.99475 * 1 2 3 30 30 H 1.09001 * 109.46801 * 60.00156 * 3 2 1 31 31 H 1.09007 * 109.47080 * 300.00273 * 3 2 1 32 32 H 0.97001 * 120.00261 * 275.00556 * 6 4 3 33 33 H 1.09003 * 109.47022 * 299.99592 * 10 7 6 34 34 H 1.09001 * 109.47521 * 59.99366 * 10 7 6 35 35 H 1.08994 * 109.47315 * 299.99623 * 11 10 7 36 36 H 1.09001 * 109.47259 * 59.99804 * 11 10 7 37 37 H 0.96999 * 119.99125 * 180.02562 * 15 14 12 38 38 H 1.09000 * 109.54207 * 296.75195 * 22 20 4 39 39 H 1.09002 * 109.54219 * 57.01757 * 22 20 4 40 40 H 1.08996 * 109.52769 * 183.17927 * 23 22 20 41 41 H 1.09002 * 109.52161 * 63.04674 * 23 22 20 42 42 H 1.08994 * 109.48366 * 297.59595 * 24 23 22 43 43 H 1.09004 * 109.48031 * 177.55688 * 24 23 22 44 44 H 1.09002 * 109.47339 * 301.17765 * 26 25 24 45 45 H 1.08996 * 109.49000 * 181.14677 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 1 3.9784 2.1774 0.0803 6 7 3.9748 0.5541 -1.2477 7 16 4.4436 1.4919 -2.5295 8 8 4.7704 0.5560 -3.5476 9 8 3.3759 2.4144 -2.6979 10 6 5.9348 2.3438 -1.9456 11 6 6.4698 3.2529 -3.0539 12 6 7.7084 3.9612 -2.5686 13 1 8.0773 3.7806 -1.5697 14 6 8.3706 4.8397 -3.3997 15 7 7.9215 5.0592 -4.6162 16 14 9.9061 5.7170 -2.7984 17 1 10.2008 5.2995 -1.4041 18 1 11.0526 5.3643 -3.6739 19 1 9.6856 7.1849 -2.8389 20 6 3.9798 0.3295 1.1875 21 1 3.4825 -0.6395 1.1451 22 6 5.4974 0.1288 1.1346 23 6 5.9403 -0.6607 2.3704 24 6 5.4953 0.0853 3.6310 25 8 4.0779 0.2645 3.6014 26 6 3.6104 1.0373 2.4939 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3632 -1.0278 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 1.6885 1.8464 0.8900 31 1 1.6885 1.8465 -0.8900 32 1 3.9912 -0.4129 -1.3227 33 1 5.6905 2.9448 -1.0697 34 1 6.6938 1.6076 -1.6810 35 1 6.7141 2.6525 -3.9301 36 1 5.7107 3.9892 -3.3181 37 1 8.3877 5.6769 -5.2010 38 1 5.7608 -0.4248 0.2333 39 1 5.9935 1.0993 1.1259 40 1 7.0258 -0.7596 2.3699 41 1 5.4844 -1.6507 2.3529 42 1 5.9840 1.0588 3.6689 43 1 5.7701 -0.4942 4.5124 44 1 4.0746 2.0232 2.5170 45 1 2.5274 1.1438 2.5560 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885744749.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:13 Heat of formation + Delta-G solvation = -185.294583 kcal Electronic energy + Delta-G solvation = -26800.011923 eV Core-core repulsion = 22944.212032 eV Total energy + Delta-G solvation = -3855.799891 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.95718 -38.10260 -36.60195 -35.92313 -35.43867 -33.92949 -33.09952 -31.43860 -31.19867 -28.66982 -26.26510 -25.64273 -24.99645 -24.20911 -21.74888 -21.45086 -20.30769 -18.96060 -17.58801 -17.04216 -16.64630 -16.25866 -16.05768 -15.81985 -15.64730 -15.48547 -15.20685 -14.83550 -14.73476 -14.56132 -14.02840 -13.49471 -13.34117 -12.88448 -12.82998 -12.68223 -12.54403 -12.18875 -11.78643 -11.69985 -11.60581 -11.51774 -11.38462 -11.33490 -11.14645 -11.07283 -10.96989 -10.80089 -10.47357 -10.41901 -10.39622 -9.83192 -9.72492 -9.61795 -9.49353 -9.04733 -8.53537 -6.15432 -4.21043 0.76018 3.07888 3.22869 3.30369 3.33242 3.65715 3.67612 4.21652 4.35106 4.39714 4.55976 4.60679 4.72578 4.78799 4.89333 5.01640 5.04731 5.09753 5.14731 5.20063 5.21621 5.25397 5.37399 5.47732 5.51234 5.52980 5.59412 5.61700 5.65376 5.74071 5.79689 5.85973 5.95348 6.07305 6.25752 6.44670 6.98489 7.03873 7.13017 7.26968 7.32984 7.77582 8.14175 8.82565 9.43967 10.95648 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012500 B = 0.004149 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.508135 B = 6747.627561 C = 8278.824086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.038 3.962 4 C 0.166 3.834 5 H 0.098 0.902 6 N -1.114 6.114 7 S 2.590 3.410 8 O -0.966 6.966 9 O -0.967 6.967 10 C -0.591 4.591 11 C 0.028 3.972 12 C -0.519 4.519 13 H 0.062 0.938 14 C 0.058 3.942 15 N -0.890 5.890 16 Si 0.899 3.101 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.282 1.282 20 C -0.124 4.124 21 H 0.098 0.902 22 C -0.124 4.124 23 C -0.155 4.155 24 C 0.058 3.942 25 O -0.381 6.381 26 C 0.066 3.934 27 H 0.041 0.959 28 H 0.083 0.917 29 H 0.039 0.961 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.416 0.584 33 H 0.117 0.883 34 H 0.122 0.878 35 H 0.033 0.967 36 H 0.033 0.967 37 H 0.265 0.735 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.051 0.949 43 H 0.091 0.909 44 H 0.053 0.947 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.980 -10.314 15.607 21.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.301 6.301 3 C -0.040 4.040 4 C 0.058 3.942 5 H 0.116 0.884 6 N -0.870 5.870 7 S 2.687 3.313 8 O -0.956 6.956 9 O -0.957 6.957 10 C -0.724 4.724 11 C -0.011 4.011 12 C -0.559 4.559 13 H 0.080 0.920 14 C -0.145 4.145 15 N -0.528 5.528 16 Si 0.726 3.274 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.144 4.144 21 H 0.116 0.884 22 C -0.162 4.162 23 C -0.192 4.192 24 C -0.019 4.019 25 O -0.299 6.299 26 C -0.011 4.011 27 H 0.060 0.940 28 H 0.102 0.898 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.250 0.750 33 H 0.135 0.865 34 H 0.140 0.860 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.074 0.926 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.070 0.930 43 H 0.109 0.891 44 H 0.071 0.929 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.449 -10.236 14.751 20.774 hybrid contribution 1.289 0.580 0.447 1.482 sum -9.160 -9.656 15.198 20.203 Atomic orbital electron populations 1.22730 0.81345 1.02526 0.99975 1.87850 1.19332 1.27453 1.95434 1.23225 0.93785 0.85373 1.01658 1.20732 0.92363 0.96766 0.84331 0.88417 1.55765 1.82740 1.19896 1.28621 1.05663 0.77469 0.74604 0.73555 1.93558 1.85922 1.61366 1.54773 1.93535 1.52266 1.65232 1.84657 1.30480 1.17657 1.12435 1.11822 1.18961 0.97797 0.93488 0.90843 1.21027 1.09682 1.25048 1.00139 0.92011 1.25068 0.97880 0.96663 0.94867 1.69967 1.40061 1.35776 1.06981 0.86426 0.82640 0.79416 0.78870 1.19659 1.20783 1.20798 1.22022 0.96976 1.01502 0.93929 0.88388 1.21712 0.94644 1.01285 0.98514 1.22175 1.01640 1.00111 0.95310 1.22610 0.81628 0.99579 0.98088 1.87937 1.22023 1.73803 1.46162 1.22644 1.00014 0.93423 0.85046 0.93999 0.89833 0.94251 0.92478 0.91002 0.74973 0.86502 0.86011 0.94849 0.94842 0.92569 0.90623 0.91226 0.90738 0.91085 0.93045 0.89093 0.92868 0.88689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.39 16 2 O -0.38 -4.34 9.71 -35.23 -0.34 -4.68 16 3 C 0.04 0.42 5.39 37.16 0.20 0.62 16 4 C 0.17 1.84 2.05 -67.93 -0.14 1.70 16 5 H 0.10 1.00 7.15 -51.93 -0.37 0.62 16 6 N -1.11 -14.20 4.46 -4.89 -0.02 -14.22 16 7 S 2.59 45.03 5.38 -107.50 -0.58 44.45 16 8 O -0.97 -19.95 18.08 -57.54 -1.04 -20.99 16 9 O -0.97 -19.27 17.05 -57.54 -0.98 -20.25 16 10 C -0.59 -10.78 5.90 37.16 0.22 -10.56 16 11 C 0.03 0.70 4.98 -27.88 -0.14 0.56 16 12 C -0.52 -14.04 9.11 -34.44 -0.31 -14.35 16 13 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.89 -26.16 13.29 55.43 0.74 -25.43 16 16 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 17 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 C -0.12 -1.21 1.94 -90.48 -0.18 -1.38 16 21 H 0.10 1.03 7.44 -51.93 -0.39 0.65 16 22 C -0.12 -1.19 5.06 -26.54 -0.13 -1.33 16 23 C -0.15 -1.33 6.13 -26.59 -0.16 -1.50 16 24 C 0.06 0.50 6.84 37.21 0.25 0.76 16 25 O -0.38 -4.06 10.77 -35.23 -0.38 -4.44 16 26 C 0.07 0.62 5.80 37.21 0.22 0.83 16 27 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 29 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.50 6.83 -51.93 -0.35 0.15 16 31 H 0.07 0.93 7.37 -51.93 -0.38 0.55 16 32 H 0.42 4.76 8.74 -34.47 -0.30 4.46 16 33 H 0.12 1.85 7.44 -51.92 -0.39 1.47 16 34 H 0.12 1.99 8.14 -51.92 -0.42 1.57 16 35 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 38 H 0.08 0.73 7.58 -51.93 -0.39 0.34 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.10 0.81 6.77 -51.93 -0.35 0.46 16 LS Contribution 372.35 15.07 5.61 5.61 Total: -1.00 -34.81 372.35 -8.72 -43.53 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -7.54 Total: 2.31 kcal Atomic # 6 Polarization: -22.59 SS G_CDS: 0.84 Total: -21.75 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: 0.71 Total: -39.65 kcal Atomic # 8 Polarization: -47.63 SS G_CDS: -2.74 Total: -50.37 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: 45.03 SS G_CDS: -0.58 Total: 44.45 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.81 -8.72 -43.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885744749.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.768 kcal (2) G-P(sol) polarization free energy of solvation -34.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds